Wall clock time and date at job start Tue Mar 31 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47035 * 2 1 4 4 H 1.09005 * 109.66363 * 180.93739 * 3 2 1 5 5 C 1.50069 * 109.56073 * 60.87341 * 3 2 1 6 6 O 1.21285 * 118.49340 * 47.50659 * 5 3 2 7 7 N 1.33378 * 123.01639 * 227.72745 * 5 3 2 8 8 C 1.45649 * 124.58846 * 4.07870 * 7 5 3 9 9 C 1.52983 * 110.77339 * 338.11979 * 8 7 5 10 10 N 1.47049 * 109.56683 * 301.22686 * 3 2 1 11 11 C 1.34774 * 121.35234 * 342.58726 * 10 3 2 12 12 O 1.21284 * 120.00154 * 353.87153 * 11 10 3 13 13 C 1.50703 * 120.00097 * 173.87467 * 11 10 3 14 14 H 1.09006 * 109.47365 * 39.99386 * 13 11 10 15 15 N 1.46899 * 109.47680 * 160.00055 * 13 11 10 16 16 C 1.53006 * 109.46876 * 279.99910 * 13 11 10 17 17 C 1.53003 * 109.46924 * 174.99626 * 16 13 11 18 18 C 1.50701 * 109.46845 * 179.97438 * 17 16 13 19 19 H 1.08001 * 120.00249 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99948 * 179.72669 * 18 17 16 21 21 N 1.31519 * 119.99886 * 0.27984 * 20 18 17 22 22 Si 1.86793 * 120.00153 * 180.27663 * 20 18 17 23 23 H 1.48497 * 109.47200 * 90.00135 * 22 20 18 24 24 H 1.48505 * 109.47188 * 210.00299 * 22 20 18 25 25 H 1.48497 * 109.47158 * 329.99769 * 22 20 18 26 26 H 1.09002 * 109.47380 * 292.94346 * 1 2 3 27 27 H 1.09000 * 109.47210 * 52.94193 * 1 2 3 28 28 H 1.08997 * 109.47549 * 172.94164 * 1 2 3 29 29 H 1.09000 * 109.46985 * 239.99718 * 2 1 3 30 30 H 1.09000 * 109.46964 * 119.99908 * 2 1 3 31 31 H 0.97003 * 117.70717 * 184.09133 * 7 5 3 32 32 H 1.09000 * 109.21750 * 217.78854 * 8 7 5 33 33 H 1.08999 * 109.21547 * 98.45313 * 8 7 5 34 34 H 1.09005 * 109.72215 * 287.05145 * 9 8 7 35 35 H 1.08998 * 109.72375 * 166.40131 * 9 8 7 36 36 H 1.00898 * 110.99761 * 59.99227 * 15 13 11 37 37 H 1.00893 * 111.00067 * 183.95557 * 15 13 11 38 38 H 1.09001 * 109.47058 * 55.00475 * 16 13 11 39 39 H 1.08995 * 109.47120 * 294.99723 * 16 13 11 40 40 H 1.09005 * 109.46889 * 60.00173 * 17 16 13 41 41 H 1.08995 * 109.47301 * 299.99986 * 17 16 13 42 42 H 0.97002 * 119.99917 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4462 -0.0168 5 6 1.5585 2.1456 1.2353 6 8 1.6834 1.5872 2.3047 7 7 0.9956 3.3545 1.2106 8 6 0.6996 4.1042 -0.0025 9 6 1.5663 3.6183 -1.1657 10 7 1.5269 2.1462 -1.1848 11 6 1.0352 1.4716 -2.2429 12 8 1.1108 0.2616 -2.2791 13 6 0.3915 2.2206 -3.3812 14 1 0.9597 3.1279 -3.5867 15 7 0.3752 1.3710 -4.5795 16 6 -1.0430 2.5927 -3.0003 17 6 -1.6548 3.4594 -4.1028 18 6 -3.0679 3.8253 -3.7279 19 1 -3.4874 3.4751 -2.7964 20 6 -3.8230 4.6123 -4.5714 21 7 -3.3120 5.0391 -5.7056 22 14 -5.5719 5.0723 -4.1032 23 1 -5.5605 6.3420 -3.3332 24 1 -6.3842 5.2470 -5.3340 25 1 -6.1613 3.9935 -3.2702 26 1 -0.3634 0.4006 0.9464 27 1 -0.3633 0.6193 -0.8201 28 1 -0.3634 -1.0198 -0.1263 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7676 3.7633 2.0603 32 1 0.8948 5.1621 0.1728 33 1 -0.3516 3.9717 -0.2586 34 1 2.5930 3.9569 -1.0259 35 1 1.1744 4.0089 -2.1047 36 1 -0.1460 0.5230 -4.4144 37 1 0.0072 1.8730 -5.3736 38 1 -1.0374 3.1482 -2.0625 39 1 -1.6344 1.6849 -2.8815 40 1 -1.6603 2.9039 -5.0407 41 1 -1.0634 4.3672 -4.2216 42 1 -3.8432 5.5931 -6.2988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424114197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:36 Heat of formation + Delta-G solvation = -58.047447 kcal Electronic energy + Delta-G solvation = -23984.810872 eV Core-core repulsion = 20579.200625 eV Total energy + Delta-G solvation = -3405.610247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29080 -39.29064 -36.62667 -35.97887 -34.55989 -33.08935 -32.51537 -30.01421 -29.33190 -27.84084 -26.07274 -24.28208 -23.79206 -22.23916 -20.82038 -19.95421 -18.53895 -17.71852 -17.41764 -16.54559 -16.26233 -16.05601 -15.53040 -15.33322 -14.61449 -14.51631 -14.25112 -13.95469 -13.73045 -13.36971 -13.25943 -12.81423 -12.72244 -12.44617 -12.20239 -12.06914 -11.64409 -11.45537 -11.24319 -11.07227 -10.97872 -10.90892 -10.68799 -10.29622 -10.08529 -9.77126 -9.33556 -9.28855 -8.92095 -8.73785 -8.51069 -8.24100 -6.15774 -4.19204 2.42602 2.66819 2.72753 3.14637 3.21608 3.29457 3.32452 4.24670 4.33160 4.45475 4.63160 4.85095 4.95815 5.00332 5.02156 5.09024 5.20713 5.30203 5.44442 5.51033 5.59040 5.65461 5.75085 5.85670 6.03650 6.16404 6.21724 6.40308 6.42788 6.53244 6.60861 6.77003 7.07348 7.22482 7.42000 7.48004 7.53280 7.80554 7.81810 7.99452 8.22714 8.30932 8.86698 9.46417 10.94944 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.004907 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.672445 B = 5705.309318 C = 6285.799018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.138 3.862 4 H 0.101 0.899 5 C 0.518 3.482 6 O -0.548 6.548 7 N -0.717 5.717 8 C 0.090 3.910 9 C 0.089 3.911 10 N -0.619 5.619 11 C 0.536 3.464 12 O -0.517 6.517 13 C 0.073 3.927 14 H 0.097 0.903 15 N -0.830 5.830 16 C -0.138 4.138 17 C 0.026 3.974 18 C -0.525 4.525 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.346 0.654 37 H 0.355 0.645 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 -1.283 8.956 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.032 3.968 4 H 0.118 0.882 5 C 0.304 3.696 6 O -0.425 6.425 7 N -0.368 5.368 8 C -0.035 4.035 9 C -0.034 4.034 10 N -0.356 5.356 11 C 0.325 3.675 12 O -0.392 6.392 13 C -0.042 4.042 14 H 0.115 0.885 15 N -0.362 5.362 16 C -0.178 4.178 17 C -0.011 4.011 18 C -0.563 4.563 19 H 0.072 0.928 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.550 -2.284 9.155 14.915 hybrid contribution -2.225 1.039 0.597 2.527 sum 9.325 -1.246 9.753 13.551 Atomic orbital electron populations 1.21808 0.95225 1.02152 1.00679 1.22059 0.97323 0.92134 1.04727 1.21322 0.99458 0.94423 0.81568 0.88172 1.20300 0.77009 0.81082 0.91230 1.90759 1.56913 1.64084 1.30785 1.45389 1.62552 1.18530 1.10372 1.21871 1.00953 0.96233 0.84458 1.22187 1.00878 0.79971 1.00391 1.48219 1.63945 1.06483 1.16975 1.20790 0.76367 0.87964 0.82346 1.90575 1.56310 1.14059 1.78241 1.21567 0.97351 0.95688 0.89635 0.88501 1.58749 1.63239 1.09175 1.05064 1.22430 0.92487 1.01150 1.01714 1.19095 0.95532 0.93987 0.92527 1.21148 0.98148 1.31665 1.05317 0.92774 1.24990 0.98337 0.95879 0.94931 1.69942 1.37156 1.35453 1.10535 0.86609 0.84621 0.78871 0.78023 1.20598 1.21117 1.19898 0.94212 0.92339 0.92531 0.86234 0.91346 0.76583 0.88949 0.90159 0.90088 0.86684 0.84045 0.82945 0.92571 0.92599 0.96374 0.96341 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.60 37.16 0.32 -1.81 16 2 C -0.13 -1.74 4.91 -26.73 -0.13 -1.87 16 3 C 0.14 1.75 3.35 -69.09 -0.23 1.52 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 5 C 0.52 6.81 6.25 -11.91 -0.07 6.73 16 6 O -0.55 -8.92 17.16 5.55 0.10 -8.83 16 7 N -0.72 -7.43 5.42 -61.46 -0.33 -7.76 16 8 C 0.09 0.79 7.33 -4.51 -0.03 0.76 16 9 C 0.09 0.83 5.94 -3.63 -0.02 0.81 16 10 N -0.62 -7.59 2.78 -166.75 -0.46 -8.06 16 11 C 0.54 7.96 5.05 -10.99 -0.06 7.90 16 12 O -0.52 -8.74 11.33 5.55 0.06 -8.68 16 13 C 0.07 1.10 2.37 -68.86 -0.16 0.94 16 14 H 0.10 1.35 6.42 -51.93 -0.33 1.02 16 15 N -0.83 -13.04 8.94 -5.65 -0.05 -13.09 16 16 C -0.14 -2.45 4.64 -26.73 -0.12 -2.57 16 17 C 0.03 0.58 4.74 -27.88 -0.13 0.44 16 18 C -0.52 -13.59 9.11 -34.44 -0.31 -13.91 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 22 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.04 0.61 7.51 -51.93 -0.39 0.22 16 27 H 0.06 0.96 5.24 -51.93 -0.27 0.68 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.12 1.80 5.62 -52.24 -0.29 1.50 16 30 H 0.07 0.93 7.84 -51.93 -0.41 0.53 16 31 H 0.40 3.63 8.80 -40.82 -0.36 3.27 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.83 7.01 -51.93 -0.36 0.47 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 1.07 5.42 -51.93 -0.28 0.79 16 36 H 0.35 5.56 8.58 -39.29 -0.34 5.22 16 37 H 0.36 5.63 7.55 -39.30 -0.30 5.34 16 38 H 0.06 0.94 6.49 -51.93 -0.34 0.60 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -31.09 325.77 -7.23 -38.32 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.11 Total: 11.41 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.06 Total: 0.46 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.11 Total: -53.09 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.16 Total: -17.51 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.09 -7.23 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.726 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds