Wall clock time and date at job start Tue Mar 31 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47035 * 2 1 4 4 H 1.09005 * 109.66363 * 180.93739 * 3 2 1 5 5 C 1.50069 * 109.56073 * 60.87341 * 3 2 1 6 6 O 1.21285 * 118.49340 * 47.50659 * 5 3 2 7 7 N 1.33378 * 123.01639 * 227.72745 * 5 3 2 8 8 C 1.45649 * 124.58846 * 4.07870 * 7 5 3 9 9 C 1.52983 * 110.77339 * 338.11979 * 8 7 5 10 10 N 1.47049 * 109.56683 * 301.22686 * 3 2 1 11 11 C 1.34774 * 121.35234 * 342.58726 * 10 3 2 12 12 O 1.21284 * 120.00154 * 353.87153 * 11 10 3 13 13 C 1.50703 * 120.00097 * 173.87467 * 11 10 3 14 14 H 1.09006 * 109.47365 * 39.99386 * 13 11 10 15 15 N 1.46899 * 109.47680 * 160.00055 * 13 11 10 16 16 C 1.53006 * 109.46876 * 279.99910 * 13 11 10 17 17 C 1.53003 * 109.46924 * 174.99626 * 16 13 11 18 18 C 1.50701 * 109.46845 * 179.97438 * 17 16 13 19 19 H 1.08001 * 120.00249 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99948 * 179.72669 * 18 17 16 21 21 N 1.31519 * 119.99886 * 0.27984 * 20 18 17 22 22 Si 1.86793 * 120.00153 * 180.27663 * 20 18 17 23 23 H 1.48497 * 109.47200 * 90.00135 * 22 20 18 24 24 H 1.48505 * 109.47188 * 210.00299 * 22 20 18 25 25 H 1.48497 * 109.47158 * 329.99769 * 22 20 18 26 26 H 1.09002 * 109.47380 * 292.94346 * 1 2 3 27 27 H 1.09000 * 109.47210 * 52.94193 * 1 2 3 28 28 H 1.08997 * 109.47549 * 172.94164 * 1 2 3 29 29 H 1.09000 * 109.46985 * 239.99718 * 2 1 3 30 30 H 1.09000 * 109.46964 * 119.99908 * 2 1 3 31 31 H 0.97003 * 117.70717 * 184.09133 * 7 5 3 32 32 H 1.09000 * 109.21750 * 217.78854 * 8 7 5 33 33 H 1.08999 * 109.21547 * 98.45313 * 8 7 5 34 34 H 1.09005 * 109.72215 * 287.05145 * 9 8 7 35 35 H 1.08998 * 109.72375 * 166.40131 * 9 8 7 36 36 H 1.00898 * 110.99761 * 59.99227 * 15 13 11 37 37 H 1.00893 * 111.00067 * 183.95557 * 15 13 11 38 38 H 1.09001 * 109.47058 * 55.00475 * 16 13 11 39 39 H 1.08995 * 109.47120 * 294.99723 * 16 13 11 40 40 H 1.09005 * 109.46889 * 60.00173 * 17 16 13 41 41 H 1.08995 * 109.47301 * 299.99986 * 17 16 13 42 42 H 0.97002 * 119.99917 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4462 -0.0168 5 6 1.5585 2.1456 1.2353 6 8 1.6834 1.5872 2.3047 7 7 0.9956 3.3545 1.2106 8 6 0.6996 4.1042 -0.0025 9 6 1.5663 3.6183 -1.1657 10 7 1.5269 2.1462 -1.1848 11 6 1.0352 1.4716 -2.2429 12 8 1.1108 0.2616 -2.2791 13 6 0.3915 2.2206 -3.3812 14 1 0.9597 3.1279 -3.5867 15 7 0.3752 1.3710 -4.5795 16 6 -1.0430 2.5927 -3.0003 17 6 -1.6548 3.4594 -4.1028 18 6 -3.0679 3.8253 -3.7279 19 1 -3.4874 3.4751 -2.7964 20 6 -3.8230 4.6123 -4.5714 21 7 -3.3120 5.0391 -5.7056 22 14 -5.5719 5.0723 -4.1032 23 1 -5.5605 6.3420 -3.3332 24 1 -6.3842 5.2470 -5.3340 25 1 -6.1613 3.9935 -3.2702 26 1 -0.3634 0.4006 0.9464 27 1 -0.3633 0.6193 -0.8201 28 1 -0.3634 -1.0198 -0.1263 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7676 3.7633 2.0603 32 1 0.8948 5.1621 0.1728 33 1 -0.3516 3.9717 -0.2586 34 1 2.5930 3.9569 -1.0259 35 1 1.1744 4.0089 -2.1047 36 1 -0.1460 0.5230 -4.4144 37 1 0.0072 1.8730 -5.3736 38 1 -1.0374 3.1482 -2.0625 39 1 -1.6344 1.6849 -2.8815 40 1 -1.6603 2.9039 -5.0407 41 1 -1.0634 4.3672 -4.2216 42 1 -3.8432 5.5931 -6.2988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424114197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:36 Heat of formation + Delta-G solvation = -82.009771 kcal Electronic energy + Delta-G solvation = -23985.849956 eV Core-core repulsion = 20579.200625 eV Total energy + Delta-G solvation = -3406.649331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33929 -40.40765 -37.62097 -37.35966 -35.64974 -34.85733 -33.70077 -31.65787 -30.27537 -29.03519 -27.55913 -25.45252 -25.15253 -23.28717 -22.37070 -21.09798 -19.59186 -18.85931 -18.43231 -18.25042 -17.41897 -17.09537 -16.74076 -16.47292 -16.31349 -15.72835 -15.36009 -15.15874 -14.97748 -14.76057 -14.41006 -14.12829 -13.98308 -13.70374 -13.45580 -13.31967 -12.89322 -12.82832 -12.67380 -12.52463 -12.46985 -12.20819 -12.09122 -11.76559 -11.53173 -11.37975 -11.25993 -10.52927 -10.18605 -10.13950 -9.73740 -9.55108 -8.19022 -6.28112 1.39756 1.40127 1.42581 1.51190 1.57458 1.67897 2.23155 2.41417 3.15428 3.30698 3.49781 3.75805 3.78677 3.84825 4.00193 4.06322 4.17038 4.21811 4.28860 4.41636 4.60782 4.63270 4.66078 4.72733 4.86028 4.92705 4.98411 5.10571 5.13418 5.23172 5.45998 5.51114 5.70305 5.73523 5.84496 6.05016 6.16935 6.24565 6.32874 6.50700 6.87506 7.03579 7.18051 7.41042 8.91345 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.004907 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.672445 B = 5705.309318 C = 6285.799018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.138 3.862 4 H 0.120 0.880 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.706 5.706 8 C 0.089 3.911 9 C 0.081 3.919 10 N -0.612 5.612 11 C 0.536 3.464 12 O -0.541 6.541 13 C 0.080 3.920 14 H 0.115 0.885 15 N -0.830 5.830 16 C -0.119 4.119 17 C 0.033 3.967 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.011 3.989 21 N -0.924 5.924 22 Si 0.951 3.049 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.272 1.272 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.407 0.593 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.343 0.657 37 H 0.353 0.647 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.000 1.000 41 H 0.009 0.991 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.124 -0.066 9.808 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.032 3.968 4 H 0.138 0.862 5 C 0.304 3.696 6 O -0.465 6.465 7 N -0.356 5.356 8 C -0.035 4.035 9 C -0.041 4.041 10 N -0.349 5.349 11 C 0.325 3.675 12 O -0.418 6.418 13 C -0.035 4.035 14 H 0.133 0.867 15 N -0.361 5.361 16 C -0.159 4.159 17 C -0.005 4.005 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.776 3.224 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.243 0.757 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.027 0.973 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.032 -1.017 10.018 15.690 hybrid contribution -2.378 0.683 0.328 2.495 sum 9.655 -0.335 10.347 14.156 Atomic orbital electron populations 1.21726 0.96185 1.01694 0.99552 1.21944 0.96329 0.93283 1.04217 1.21331 1.00517 0.93516 0.81434 0.86212 1.20317 0.77016 0.81615 0.90666 1.90747 1.58683 1.65173 1.31883 1.45359 1.61074 1.17710 1.11482 1.22024 0.99932 0.98025 0.83530 1.22508 1.02939 0.77869 1.00773 1.48194 1.62852 1.07822 1.15986 1.20626 0.76549 0.87602 0.82733 1.90578 1.57430 1.15027 1.78807 1.21503 0.95883 0.96421 0.89710 0.86712 1.58770 1.62980 1.09112 1.05248 1.22150 0.93717 0.99500 1.00533 1.18951 0.94267 0.94020 0.93227 1.21579 0.99856 1.31268 1.05126 0.93014 1.25743 1.02043 0.96053 0.94944 1.70042 1.38573 1.36315 1.11492 0.85665 0.80189 0.78816 0.77689 1.19584 1.21105 1.19659 0.94893 0.93679 0.92688 0.87176 0.91240 0.75674 0.85137 0.91640 0.87036 0.86445 0.84382 0.83189 0.91383 0.94309 0.98136 0.97256 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.60 71.98 0.62 -3.40 16 2 C -0.12 -3.27 4.91 30.59 0.15 -3.12 16 3 C 0.14 3.24 3.35 43.94 0.15 3.39 16 4 H 0.12 2.38 8.14 -2.38 -0.02 2.37 16 5 C 0.52 12.70 6.25 87.68 0.55 13.25 16 6 O -0.58 -18.44 17.16 -3.05 -0.05 -18.49 16 7 N -0.71 -12.88 5.42 -467.52 -2.53 -15.42 16 8 C 0.09 1.29 7.33 86.53 0.63 1.92 16 9 C 0.08 1.25 5.94 86.23 0.51 1.76 16 10 N -0.61 -13.75 2.78 -799.86 -2.22 -15.97 16 11 C 0.54 15.23 5.05 87.66 0.44 15.68 16 12 O -0.54 -18.02 11.33 -3.04 -0.03 -18.05 16 13 C 0.08 2.33 2.37 44.17 0.10 2.44 16 14 H 0.12 2.96 6.42 -2.38 -0.02 2.94 16 15 N -0.83 -25.74 8.94 -171.78 -1.54 -27.27 16 16 C -0.12 -4.15 4.64 30.60 0.14 -4.01 16 17 C 0.03 1.45 4.74 29.85 0.14 1.60 16 18 C -0.54 -27.85 9.11 25.60 0.23 -27.62 16 19 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 20 C 0.01 0.58 5.46 84.65 0.46 1.04 16 21 N -0.92 -51.67 13.29 21.45 0.28 -51.39 16 22 Si 0.95 41.68 29.54 68.60 2.03 43.70 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H 0.03 1.00 7.51 -2.39 -0.02 0.98 16 27 H 0.04 1.46 5.24 -2.39 -0.01 1.44 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.11 3.27 5.62 -7.36 -0.04 3.23 16 30 H 0.07 1.86 7.84 -2.39 -0.02 1.85 16 31 H 0.41 6.42 8.80 -92.71 -0.82 5.61 16 32 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.20 7.01 -2.39 -0.02 1.18 16 34 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 1.81 5.42 -2.39 -0.01 1.80 16 36 H 0.34 11.06 8.58 -89.70 -0.77 10.29 16 37 H 0.35 11.18 7.55 -89.70 -0.68 10.51 16 38 H 0.07 2.19 6.49 -2.39 -0.02 2.18 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.00 0.02 6.87 -2.38 -0.02 0.00 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -66.50 325.77 -1.15 -67.65 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.22 Total: 32.33 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 4.14 Total: 2.92 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -6.01 Total: -110.05 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.09 Total: -36.55 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.50 -1.15 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.361 kcal (2) G-P(sol) polarization free energy of solvation -66.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds