Wall clock time and date at job start Tue Mar 31 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.46895 * 2 1 4 4 H 1.08995 * 109.57183 * 55.23078 * 3 2 1 5 5 C 1.50411 * 109.37246 * 175.66403 * 3 2 1 6 6 O 1.21279 * 118.46560 * 287.24566 * 5 3 2 7 7 N 1.33383 * 123.04713 * 107.50342 * 5 3 2 8 8 C 1.45657 * 124.58851 * 3.75637 * 7 5 3 9 9 C 1.52984 * 110.77321 * 338.38470 * 8 7 5 10 10 N 1.47056 * 109.56584 * 294.99306 * 3 2 1 11 11 C 1.34775 * 121.34903 * 102.93980 * 10 3 2 12 12 O 1.21285 * 120.00051 * 359.97438 * 11 10 3 13 13 C 1.50700 * 120.00150 * 179.97438 * 11 10 3 14 14 H 1.08998 * 109.46914 * 320.00111 * 13 11 10 15 15 N 1.46897 * 109.47167 * 200.00092 * 13 11 10 16 16 C 1.52995 * 109.47088 * 79.99866 * 13 11 10 17 17 C 1.53001 * 109.47180 * 185.00719 * 16 13 11 18 18 C 1.50701 * 109.47248 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99892 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00286 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47423 * 59.99676 * 22 20 18 24 24 H 1.48502 * 109.47514 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46821 * 299.99882 * 22 20 18 26 26 H 1.09008 * 109.47292 * 60.00728 * 1 2 3 27 27 H 1.09000 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47613 * 300.00566 * 1 2 3 29 29 H 1.09003 * 109.47585 * 239.99844 * 2 1 3 30 30 H 1.09000 * 109.47548 * 119.99383 * 2 1 3 31 31 H 0.97001 * 117.70724 * 184.04796 * 7 5 3 32 32 H 1.08991 * 109.21479 * 98.72370 * 8 7 5 33 33 H 1.09004 * 109.21347 * 218.05326 * 8 7 5 34 34 H 1.08999 * 109.71876 * 166.39790 * 9 8 7 35 35 H 1.08998 * 109.72219 * 287.05320 * 9 8 7 36 36 H 1.00902 * 111.00010 * 176.04723 * 15 13 11 37 37 H 1.00897 * 111.00153 * 299.99717 * 15 13 11 38 38 H 1.09009 * 109.47127 * 305.00150 * 16 13 11 39 39 H 1.08999 * 109.47551 * 65.00401 * 16 13 11 40 40 H 1.09009 * 109.46626 * 299.99738 * 17 16 13 41 41 H 1.08991 * 109.47475 * 59.99435 * 17 16 13 42 42 H 0.96996 * 120.00380 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6094 1.9820 0.8436 5 6 3.5401 1.4414 0.1073 6 8 4.0433 1.1506 1.1718 7 7 4.3425 1.7501 -0.9125 8 6 3.8829 2.1983 -2.2200 9 6 2.4330 1.7734 -2.4604 10 7 1.6520 2.1020 -1.2559 11 6 0.6238 2.9721 -1.3025 12 8 -0.0029 3.2248 -0.2954 13 6 0.2528 3.6310 -2.6061 14 1 1.1594 3.8986 -3.1488 15 7 -0.5320 4.8431 -2.3361 16 6 -0.5788 2.6620 -3.4487 17 6 -0.8498 3.2825 -4.8208 18 6 -1.6696 2.3283 -5.6506 19 1 -1.9671 1.3745 -5.2406 20 6 -2.0397 2.6730 -6.9333 21 7 -1.6777 3.8347 -7.4324 22 14 -3.0564 1.4906 -7.9617 23 1 -4.3459 1.2213 -7.2763 24 1 -3.3203 2.0933 -9.2930 25 1 -2.3115 0.2174 -8.1331 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 5.2991 1.6664 -0.7751 32 1 3.9517 3.2848 -2.2713 33 1 4.5172 1.7624 -2.9920 34 1 2.0296 2.3113 -3.3183 35 1 2.3900 0.7001 -2.6451 36 1 -0.7384 5.3381 -3.1908 37 1 -1.3782 4.6214 -1.8334 38 1 -0.0315 1.7277 -3.5743 39 1 -1.5256 2.4638 -2.9462 40 1 -1.3972 4.2169 -4.6952 41 1 0.0968 3.4808 -5.3233 42 1 -1.9378 4.0771 -8.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424114198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:38 Heat of formation + Delta-G solvation = -80.792417 kcal Electronic energy + Delta-G solvation = -23540.893412 eV Core-core repulsion = 20134.296869 eV Total energy + Delta-G solvation = -3406.596543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09131 -39.27018 -36.70844 -35.79247 -34.97487 -33.02267 -32.67194 -29.98839 -29.58557 -27.90576 -26.13562 -24.13294 -23.84351 -22.27493 -20.89275 -19.74095 -18.72290 -17.94475 -17.33710 -16.70470 -16.41392 -15.94839 -15.42843 -14.95935 -14.73570 -14.61631 -14.45982 -13.98369 -13.83997 -13.51639 -13.31045 -12.74042 -12.65872 -12.38577 -12.24030 -12.14144 -11.89287 -11.67797 -11.42969 -11.13431 -11.06295 -10.97506 -10.76215 -10.34728 -10.07756 -9.96061 -9.40453 -9.36447 -9.28432 -8.77128 -8.50156 -8.28051 -6.14804 -4.18342 2.33993 2.63841 2.75101 3.03542 3.23922 3.29552 3.31589 4.16449 4.33598 4.41931 4.61541 4.77411 4.80293 4.90924 5.02299 5.08644 5.21533 5.24740 5.32187 5.44200 5.46283 5.53044 5.62994 5.70304 5.85893 5.95805 6.14717 6.16548 6.27145 6.41781 6.49624 6.76800 6.98673 7.19543 7.42287 7.47835 7.53701 7.81069 7.82316 7.90391 8.22936 8.26201 8.87288 9.47131 10.95913 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021716 B = 0.004202 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.086232 B = 6661.332704 C = 6688.572734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.133 3.867 4 H 0.128 0.872 5 C 0.521 3.479 6 O -0.549 6.549 7 N -0.716 5.716 8 C 0.093 3.907 9 C 0.085 3.915 10 N -0.616 5.616 11 C 0.534 3.466 12 O -0.527 6.527 13 C 0.075 3.925 14 H 0.097 0.903 15 N -0.831 5.831 16 C -0.139 4.139 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.355 0.645 37 H 0.346 0.654 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -4.769 8.703 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.026 3.974 4 H 0.146 0.854 5 C 0.306 3.694 6 O -0.426 6.426 7 N -0.368 5.368 8 C -0.032 4.032 9 C -0.038 4.038 10 N -0.353 5.353 11 C 0.323 3.677 12 O -0.401 6.401 13 C -0.040 4.040 14 H 0.115 0.885 15 N -0.363 5.363 16 C -0.179 4.179 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.072 0.928 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.713 -4.354 10.032 15.309 hybrid contribution -0.818 -1.120 -1.489 2.035 sum 9.895 -5.475 8.543 14.172 Atomic orbital electron populations 1.21685 0.93951 1.01720 1.02925 1.21756 0.97698 0.93536 1.03109 1.21354 0.89866 0.96268 0.89913 0.85390 1.20307 0.89876 0.75813 0.83384 1.90771 1.75679 1.49251 1.26897 1.45375 1.10454 1.68025 1.12957 1.21837 0.96239 1.00703 0.84401 1.22225 0.89700 1.02794 0.89080 1.48283 1.33502 1.44842 1.08712 1.20932 0.78231 0.77264 0.91284 1.90653 1.51223 1.61717 1.36494 1.21512 0.99181 0.91931 0.91360 0.88498 1.58747 1.27168 1.22297 1.28085 1.22437 0.98654 0.98021 0.98781 1.19094 0.97042 0.96153 0.88873 1.21117 1.33743 1.02931 0.98565 0.92772 1.24992 0.96023 0.95246 0.97877 1.69929 1.45930 1.20858 1.16407 0.86659 0.80794 0.81134 0.79440 1.20222 1.21202 1.20206 0.92279 0.92386 0.92151 0.91354 0.90054 0.76541 0.90783 0.88901 0.86450 0.89796 0.82907 0.84026 0.92392 0.92520 0.96381 0.96347 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 37.15 0.36 -1.38 16 2 C -0.12 -1.36 5.49 -26.73 -0.15 -1.51 16 3 C 0.13 1.67 2.47 -68.92 -0.17 1.50 16 4 H 0.13 1.86 7.22 -51.93 -0.38 1.49 16 5 C 0.52 6.55 7.08 -11.74 -0.08 6.47 16 6 O -0.55 -8.67 17.80 5.56 0.10 -8.57 16 7 N -0.72 -6.67 5.42 -61.33 -0.33 -7.00 16 8 C 0.09 0.69 7.34 -4.50 -0.03 0.66 16 9 C 0.09 0.81 5.67 -3.63 -0.02 0.79 16 10 N -0.62 -7.63 2.26 -166.56 -0.38 -8.01 16 11 C 0.53 8.21 6.02 -10.99 -0.07 8.15 16 12 O -0.53 -9.65 15.81 5.55 0.09 -9.56 16 13 C 0.08 1.16 2.35 -68.87 -0.16 1.00 16 14 H 0.10 1.37 6.74 -51.93 -0.35 1.02 16 15 N -0.83 -13.39 8.94 -5.66 -0.05 -13.44 16 16 C -0.14 -2.48 4.50 -26.73 -0.12 -2.60 16 17 C 0.03 0.57 4.74 -27.88 -0.13 0.44 16 18 C -0.53 -13.64 9.11 -34.44 -0.31 -13.95 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 22 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H 0.06 0.81 7.06 -51.92 -0.37 0.45 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.69 7.35 -51.93 -0.38 0.31 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.40 3.12 8.80 -40.82 -0.36 2.76 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.12 1.14 5.08 -51.93 -0.26 0.88 16 35 H 0.08 0.71 7.40 -51.93 -0.38 0.33 16 36 H 0.36 5.73 7.55 -39.29 -0.30 5.43 16 37 H 0.35 5.71 8.58 -39.29 -0.34 5.38 16 38 H 0.06 0.97 7.10 -51.92 -0.37 0.60 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.43 6.87 -51.92 -0.36 0.07 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -31.83 337.08 -7.10 -38.94 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.34 Total: 10.23 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.99 Total: 1.09 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.02 Total: -52.69 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.19 Total: -18.13 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.83 -7.10 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.855 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds