Wall clock time and date at job start Tue Mar 31 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46770 * 2 1 4 4 H 1.09002 * 109.30329 * 302.43721 * 3 2 1 5 5 C 1.50259 * 109.38582 * 182.69845 * 3 2 1 6 6 O 1.21278 * 118.62491 * 42.64070 * 5 3 2 7 7 N 1.33713 * 122.74988 * 222.66697 * 5 3 2 8 8 C 1.46500 * 118.53560 * 181.68545 * 7 5 3 9 9 C 1.53001 * 109.47325 * 89.99913 * 8 7 5 10 10 C 1.46004 * 122.93107 * 1.63633 * 7 5 3 11 11 C 1.52986 * 110.04561 * 341.88425 * 10 7 5 12 12 N 1.46897 * 109.38670 * 62.17983 * 3 2 1 13 13 C 1.46901 * 111.00225 * 47.08830 * 12 3 2 14 14 C 1.50697 * 109.47410 * 188.55250 * 13 12 3 15 15 O 1.21297 * 119.99674 * 5.62379 * 14 13 12 16 16 N 1.34773 * 120.00141 * 185.61164 * 14 13 12 17 17 C 1.37098 * 120.00000 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99781 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99788 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99853 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46962 * 90.00422 * 21 19 17 23 23 H 1.48502 * 109.46958 * 210.00343 * 21 19 17 24 24 H 1.48498 * 109.47289 * 330.00361 * 21 19 17 25 25 H 1.08996 * 109.47247 * 60.00550 * 1 2 3 26 26 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46893 * 299.99765 * 1 2 3 28 28 H 1.09004 * 109.47347 * 240.00034 * 2 1 3 29 29 H 1.09004 * 109.47422 * 120.00044 * 2 1 3 30 30 H 1.08999 * 109.47494 * 209.99965 * 8 7 5 31 31 H 1.09007 * 109.47407 * 329.99932 * 8 7 5 32 32 H 1.08991 * 109.47182 * 59.99737 * 9 8 7 33 33 H 1.09001 * 109.47013 * 180.02562 * 9 8 7 34 34 H 1.09006 * 109.46757 * 299.99570 * 9 8 7 35 35 H 1.08994 * 109.39052 * 221.69638 * 10 7 5 36 36 H 1.09009 * 109.35860 * 102.04585 * 10 7 5 37 37 H 1.08998 * 109.59182 * 290.49643 * 11 10 7 38 38 H 1.09000 * 109.58959 * 170.04300 * 11 10 7 39 39 H 1.09000 * 109.46893 * 308.55841 * 13 12 3 40 40 H 1.08999 * 109.47312 * 68.55159 * 13 12 3 41 41 H 0.97000 * 120.00127 * 0.02562 * 16 14 13 42 42 H 0.96993 * 119.99874 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6398 1.9662 -0.8682 5 6 3.5410 1.4409 -0.0667 6 8 4.0881 0.6686 -0.8251 7 7 4.2990 2.2550 0.6754 8 6 5.7535 2.2017 0.5092 9 6 6.1797 3.1935 -0.5750 10 6 3.7416 3.1954 1.6432 11 6 2.2566 3.4250 1.3559 12 7 1.5927 2.1178 1.2255 13 6 1.8400 1.2815 2.4076 14 6 1.1844 1.9071 3.6117 15 8 0.4869 2.8907 3.4799 16 7 1.3729 1.3737 4.8349 17 6 0.7760 1.9425 5.9302 18 1 0.1545 2.8179 5.8128 19 6 0.9707 1.3928 7.1914 20 7 0.3982 1.9378 8.2413 21 14 2.0452 -0.1217 7.3945 22 1 3.4501 0.2964 7.6326 23 1 1.5633 -0.9190 8.5509 24 1 1.9764 -0.9464 6.1615 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 6.2367 2.4629 1.4507 31 1 6.0492 1.1942 0.2165 32 1 5.8841 4.2009 -0.2824 33 1 7.2619 3.1535 -0.6990 34 1 5.6966 2.9322 -1.5166 35 1 4.2741 4.1438 1.5743 36 1 3.8569 2.7901 2.6486 37 1 2.1463 3.9853 0.4275 38 1 1.8073 3.9828 2.1776 39 1 1.4242 0.2875 2.2429 40 1 2.9136 1.2024 2.5786 41 1 1.9308 0.5872 4.9404 42 1 0.5344 1.5543 9.1217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495202502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:31 Heat of formation + Delta-G solvation = -47.217364 kcal Electronic energy + Delta-G solvation = -23894.840268 eV Core-core repulsion = 20489.699649 eV Total energy + Delta-G solvation = -3405.140619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17441 -38.61150 -36.94828 -36.22747 -34.02611 -32.94285 -31.72972 -30.86402 -28.97628 -28.55372 -25.66399 -24.44280 -23.64339 -22.35084 -21.07243 -19.59976 -18.83736 -17.79700 -17.22522 -16.88725 -16.21711 -15.73611 -15.31056 -14.91318 -14.62992 -14.31833 -13.98763 -13.67501 -13.67166 -13.36517 -13.22246 -12.79021 -12.41502 -12.29046 -12.26993 -12.17221 -11.93150 -11.78149 -11.63176 -11.31753 -11.21045 -11.15685 -10.79409 -10.66020 -10.61180 -10.14262 -10.01808 -9.58816 -8.85454 -8.60446 -8.23119 -8.03151 -6.35554 -3.87100 2.54093 2.80893 2.99561 3.03288 3.12319 3.66697 3.78172 4.06340 4.35333 4.61273 4.76443 4.87178 4.91520 4.97323 5.05769 5.13981 5.18847 5.22365 5.31306 5.36715 5.51690 5.54032 5.60800 5.70970 5.74347 5.80976 5.82622 5.89879 5.97994 6.06877 6.13838 6.17173 6.33185 6.50717 6.92579 6.98375 7.32929 7.53011 8.06758 8.09386 8.54927 8.90361 9.37578 9.77319 10.77367 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.005231 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.065986 B = 5351.328324 C = 5825.358669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.072 3.928 4 H 0.116 0.884 5 C 0.488 3.512 6 O -0.551 6.551 7 N -0.605 5.605 8 C 0.102 3.898 9 C -0.164 4.164 10 C 0.071 3.929 11 C 0.036 3.964 12 N -0.491 5.491 13 C 0.024 3.976 14 C 0.454 3.546 15 O -0.558 6.558 16 N -0.590 5.590 17 C -0.304 4.304 18 H 0.121 0.879 19 C 0.043 3.957 20 N -0.880 5.880 21 Si 0.876 3.124 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.370 0.630 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -1.327 -14.837 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.040 4.040 4 H 0.134 0.866 5 C 0.275 3.725 6 O -0.428 6.428 7 N -0.338 5.338 8 C -0.020 4.020 9 C -0.222 4.222 10 C -0.053 4.053 11 C -0.092 4.092 12 N -0.214 5.214 13 C -0.107 4.107 14 C 0.240 3.760 15 O -0.440 6.440 16 N -0.229 5.229 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.160 4.160 20 N -0.520 5.520 21 Si 0.703 3.297 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.202 0.798 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.128 -0.979 -15.104 17.180 hybrid contribution 1.865 -1.254 0.545 2.312 sum 9.993 -2.233 -14.559 17.800 Atomic orbital electron populations 1.21715 0.93986 1.01392 1.03314 1.21589 0.97349 0.92896 1.03153 1.22089 0.87995 0.98179 0.95715 0.86598 1.21411 0.91616 0.79609 0.79887 1.90656 1.74013 1.39346 1.38806 1.47644 1.07052 1.38941 1.40183 1.21463 0.80109 1.01283 0.99169 1.22074 1.01328 0.99326 0.99458 1.22270 0.97161 0.93381 0.92511 1.22752 0.89166 0.92243 1.05013 1.62232 1.56159 1.02763 1.00287 1.22232 0.99252 0.98437 0.90793 1.19503 0.86211 0.87076 0.83246 1.90538 1.41334 1.27251 1.84879 1.42225 1.45871 1.27918 1.06891 1.19416 1.27583 1.12995 0.83306 0.86156 1.25023 0.97685 0.98039 0.95237 1.69616 1.42834 1.40466 0.99034 0.86722 0.81187 0.83133 0.78674 1.19676 1.20091 1.19476 0.92688 0.92919 0.90818 0.90324 0.91431 0.90642 0.89740 0.92583 0.91683 0.92358 0.90096 0.90928 0.90197 0.85795 0.88066 0.93083 0.79788 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.56 37.16 0.36 -1.38 16 2 C -0.11 -1.39 4.65 -26.73 -0.12 -1.51 16 3 C 0.07 0.94 2.44 -69.08 -0.17 0.78 16 4 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 5 C 0.49 6.91 6.59 -11.67 -0.08 6.83 16 6 O -0.55 -9.14 15.49 5.56 0.09 -9.05 16 7 N -0.60 -7.59 2.66 -174.58 -0.46 -8.05 16 8 C 0.10 1.11 6.01 -4.04 -0.02 1.09 16 9 C -0.16 -1.55 10.23 37.16 0.38 -1.17 16 10 C 0.07 0.86 5.62 -4.32 -0.02 0.83 16 11 C 0.04 0.50 5.61 -3.67 -0.02 0.48 16 12 N -0.49 -7.25 4.00 -229.50 -0.92 -8.17 16 13 C 0.02 0.39 4.08 -4.98 -0.02 0.37 16 14 C 0.45 9.63 7.43 -10.99 -0.08 9.55 16 15 O -0.56 -13.76 14.13 5.54 0.08 -13.68 16 16 N -0.59 -13.43 5.09 -10.96 -0.06 -13.48 16 17 C -0.30 -8.27 10.16 -14.93 -0.15 -8.42 16 18 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 19 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16 20 N -0.88 -25.09 13.96 55.50 0.77 -24.32 16 21 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.04 7.12 -51.93 -0.37 0.67 16 28 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 29 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 30 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 31 H 0.08 1.03 7.21 -51.92 -0.37 0.65 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.07 0.96 6.75 -51.92 -0.35 0.61 16 37 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.12 2.02 6.18 -51.93 -0.32 1.70 16 39 H 0.10 1.53 5.15 -51.93 -0.27 1.26 16 40 H 0.05 0.78 5.68 -51.93 -0.30 0.48 16 41 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -31.51 328.05 -6.60 -38.11 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.28 Total: 10.95 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.05 Total: 8.50 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.66 Total: -54.02 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.16 Total: -22.74 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.51 -6.60 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495202502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.109 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds