Wall clock time and date at job start Tue Mar 31 2020 02:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46770 * 2 1 4 4 H 1.09002 * 109.30329 * 302.43721 * 3 2 1 5 5 C 1.50259 * 109.38582 * 182.69845 * 3 2 1 6 6 O 1.21278 * 118.62491 * 42.64070 * 5 3 2 7 7 N 1.33713 * 122.74988 * 222.66697 * 5 3 2 8 8 C 1.46500 * 118.53560 * 181.68545 * 7 5 3 9 9 C 1.53001 * 109.47325 * 89.99913 * 8 7 5 10 10 C 1.46004 * 122.93107 * 1.63633 * 7 5 3 11 11 C 1.52986 * 110.04561 * 341.88425 * 10 7 5 12 12 N 1.46897 * 109.38670 * 62.17983 * 3 2 1 13 13 C 1.46901 * 111.00225 * 47.08830 * 12 3 2 14 14 C 1.50697 * 109.47410 * 188.55250 * 13 12 3 15 15 O 1.21297 * 119.99674 * 5.62379 * 14 13 12 16 16 N 1.34773 * 120.00141 * 185.61164 * 14 13 12 17 17 C 1.37098 * 120.00000 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99781 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99788 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99853 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46962 * 90.00422 * 21 19 17 23 23 H 1.48502 * 109.46958 * 210.00343 * 21 19 17 24 24 H 1.48498 * 109.47289 * 330.00361 * 21 19 17 25 25 H 1.08996 * 109.47247 * 60.00550 * 1 2 3 26 26 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46893 * 299.99765 * 1 2 3 28 28 H 1.09004 * 109.47347 * 240.00034 * 2 1 3 29 29 H 1.09004 * 109.47422 * 120.00044 * 2 1 3 30 30 H 1.08999 * 109.47494 * 209.99965 * 8 7 5 31 31 H 1.09007 * 109.47407 * 329.99932 * 8 7 5 32 32 H 1.08991 * 109.47182 * 59.99737 * 9 8 7 33 33 H 1.09001 * 109.47013 * 180.02562 * 9 8 7 34 34 H 1.09006 * 109.46757 * 299.99570 * 9 8 7 35 35 H 1.08994 * 109.39052 * 221.69638 * 10 7 5 36 36 H 1.09009 * 109.35860 * 102.04585 * 10 7 5 37 37 H 1.08998 * 109.59182 * 290.49643 * 11 10 7 38 38 H 1.09000 * 109.58959 * 170.04300 * 11 10 7 39 39 H 1.09000 * 109.46893 * 308.55841 * 13 12 3 40 40 H 1.08999 * 109.47312 * 68.55159 * 13 12 3 41 41 H 0.97000 * 120.00127 * 0.02562 * 16 14 13 42 42 H 0.96993 * 119.99874 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6398 1.9662 -0.8682 5 6 3.5410 1.4409 -0.0667 6 8 4.0881 0.6686 -0.8251 7 7 4.2990 2.2550 0.6754 8 6 5.7535 2.2017 0.5092 9 6 6.1797 3.1935 -0.5750 10 6 3.7416 3.1954 1.6432 11 6 2.2566 3.4250 1.3559 12 7 1.5927 2.1178 1.2255 13 6 1.8400 1.2815 2.4076 14 6 1.1844 1.9071 3.6117 15 8 0.4869 2.8907 3.4799 16 7 1.3729 1.3737 4.8349 17 6 0.7760 1.9425 5.9302 18 1 0.1545 2.8179 5.8128 19 6 0.9707 1.3928 7.1914 20 7 0.3982 1.9378 8.2413 21 14 2.0452 -0.1217 7.3945 22 1 3.4501 0.2964 7.6326 23 1 1.5633 -0.9190 8.5509 24 1 1.9764 -0.9464 6.1615 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 6.2367 2.4629 1.4507 31 1 6.0492 1.1942 0.2165 32 1 5.8841 4.2009 -0.2824 33 1 7.2619 3.1535 -0.6990 34 1 5.6966 2.9322 -1.5166 35 1 4.2741 4.1438 1.5743 36 1 3.8569 2.7901 2.6486 37 1 2.1463 3.9853 0.4275 38 1 1.8073 3.9828 2.1776 39 1 1.4242 0.2875 2.2429 40 1 2.9136 1.2024 2.5786 41 1 1.9308 0.5872 4.9404 42 1 0.5344 1.5543 9.1217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495202502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:30 Heat of formation + Delta-G solvation = -70.551179 kcal Electronic energy + Delta-G solvation = -23895.852098 eV Core-core repulsion = 20489.699649 eV Total energy + Delta-G solvation = -3406.152449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29468 -40.22443 -38.28314 -37.22917 -35.94598 -33.95670 -33.72914 -31.87704 -30.03619 -29.85841 -27.04417 -25.94212 -24.64735 -23.44388 -22.16019 -21.26844 -20.50226 -19.18751 -18.47625 -17.97573 -17.44896 -17.12608 -16.69506 -16.34774 -15.93057 -15.54961 -15.19690 -15.11056 -14.76646 -14.68175 -14.53553 -14.32443 -13.92305 -13.45939 -13.24209 -13.22363 -13.11826 -12.95642 -12.79283 -12.68806 -12.42428 -12.31466 -12.00578 -11.98719 -11.88694 -11.68998 -11.44610 -11.24897 -10.35999 -10.21642 -9.85131 -9.24540 -8.39376 -5.99162 1.30567 1.33822 1.42996 1.46099 1.81278 1.95009 2.22671 2.49817 3.15669 3.16616 3.32665 3.69865 3.85490 3.92328 4.04076 4.08567 4.14236 4.18445 4.30065 4.37069 4.46560 4.49166 4.55631 4.64351 4.69279 4.79596 4.88433 4.94392 5.00728 5.13787 5.20848 5.22641 5.38735 5.49356 5.54589 5.76930 5.86676 5.99458 6.29480 6.60527 6.90301 7.00894 7.41189 7.96552 8.77855 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.005231 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.065986 B = 5351.328324 C = 5825.358669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.077 3.923 4 H 0.129 0.871 5 C 0.486 3.514 6 O -0.577 6.577 7 N -0.602 5.602 8 C 0.098 3.902 9 C -0.156 4.156 10 C 0.077 3.923 11 C 0.037 3.963 12 N -0.503 5.503 13 C 0.039 3.961 14 C 0.461 3.539 15 O -0.595 6.595 16 N -0.593 5.593 17 C -0.320 4.320 18 H 0.062 0.938 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.954 3.046 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.236 1.236 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.386 0.614 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 -2.922 -16.229 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.035 4.035 4 H 0.147 0.853 5 C 0.273 3.727 6 O -0.457 6.457 7 N -0.334 5.334 8 C -0.024 4.024 9 C -0.214 4.214 10 C -0.046 4.046 11 C -0.091 4.091 12 N -0.227 5.227 13 C -0.091 4.091 14 C 0.248 3.752 15 O -0.478 6.478 16 N -0.235 5.235 17 C -0.450 4.450 18 H 0.080 0.920 19 C -0.209 4.209 20 N -0.573 5.573 21 Si 0.775 3.225 22 H -0.182 1.182 23 H -0.201 1.201 24 H -0.159 1.159 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.221 0.779 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.278 -2.560 -16.520 19.624 hybrid contribution 1.135 -0.614 0.904 1.575 sum 11.413 -3.174 -15.616 19.601 Atomic orbital electron populations 1.21651 0.93590 1.02035 1.02514 1.21572 0.97532 0.92319 1.03231 1.22128 0.87650 0.98678 0.95009 0.85350 1.21515 0.91921 0.79466 0.79753 1.90651 1.74455 1.40512 1.40060 1.47701 1.07835 1.38326 1.39533 1.21624 0.79039 1.01063 1.00652 1.22012 1.02325 0.99186 0.97917 1.22198 0.96281 0.94424 0.91737 1.22667 0.90004 0.91642 1.04830 1.62189 1.57048 1.03112 1.00319 1.22066 0.99529 0.98672 0.88881 1.20453 0.84704 0.85960 0.84056 1.90533 1.42687 1.28936 1.85664 1.42057 1.46445 1.28676 1.06289 1.18987 1.28184 1.12284 0.85513 0.91981 1.25975 0.99022 1.01852 0.94072 1.69788 1.44879 1.42793 0.99871 0.85506 0.78928 0.78192 0.79841 1.18221 1.20132 1.15930 0.91776 0.91610 0.93246 0.89867 0.91668 0.88669 0.91069 0.91729 0.89892 0.94203 0.87504 0.91908 0.88271 0.88820 0.86394 0.91398 0.77928 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.56 71.98 0.69 -2.36 16 2 C -0.11 -2.44 4.65 30.59 0.14 -2.30 16 3 C 0.08 1.85 2.44 44.03 0.11 1.95 16 4 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 5 C 0.49 12.68 6.59 87.68 0.58 13.26 16 6 O -0.58 -18.06 15.49 -3.02 -0.05 -18.11 16 7 N -0.60 -13.57 2.66 -825.24 -2.19 -15.77 16 8 C 0.10 1.87 6.01 86.38 0.52 2.39 16 9 C -0.16 -2.54 10.23 71.98 0.74 -1.80 16 10 C 0.08 1.69 5.62 86.47 0.49 2.18 16 11 C 0.04 0.95 5.61 86.24 0.48 1.43 16 12 N -0.50 -14.13 4.00 -880.00 -3.52 -17.65 16 13 C 0.04 1.20 4.08 85.56 0.35 1.55 16 14 C 0.46 19.55 7.43 87.66 0.65 20.20 16 15 O -0.59 -30.26 14.13 -3.08 -0.04 -30.31 16 16 N -0.59 -26.85 5.09 -306.99 -1.56 -28.41 16 17 C -0.32 -18.01 10.16 84.04 0.85 -17.16 16 18 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.93 -54.91 13.96 21.66 0.30 -54.60 16 21 Si 0.95 38.12 27.74 68.60 1.90 40.02 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.24 -8.06 6.52 99.48 0.65 -7.41 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.32 7.12 -2.39 -0.02 1.31 16 28 H 0.08 1.84 7.73 -2.38 -0.02 1.83 16 29 H 0.06 1.49 5.99 -2.38 -0.01 1.48 16 30 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 31 H 0.07 1.58 7.21 -2.38 -0.02 1.57 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.11 1.82 8.12 -2.39 -0.02 1.80 16 36 H 0.06 1.53 6.75 -2.38 -0.02 1.51 16 37 H 0.10 2.17 8.08 -2.39 -0.02 2.16 16 38 H 0.09 3.08 6.18 -2.39 -0.01 3.07 16 39 H 0.12 3.28 5.15 -2.39 -0.01 3.27 16 40 H 0.07 1.89 5.68 -2.39 -0.01 1.88 16 41 H 0.39 14.84 5.76 -92.71 -0.53 14.31 16 42 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.72 328.05 1.33 -70.39 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.44 Total: 35.19 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.06 Total: 19.26 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.98 Total: -116.44 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.09 Total: -48.42 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -71.72 1.33 -70.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495202502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.162 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds