Wall clock time and date at job start Tue Mar 31 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47353 * 2 1 4 4 C 1.53002 * 109.47000 * 119.99543 * 2 1 3 5 5 C 1.50706 * 109.47222 * 295.00025 * 4 2 1 6 6 N 1.34774 * 120.00340 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99658 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.47370 * 239.99344 * 2 1 3 9 9 O 1.21280 * 119.99734 * 334.24514 * 8 2 1 10 10 N 1.34771 * 120.00029 * 154.24401 * 8 2 1 11 11 C 1.47087 * 120.88283 * 5.05785 * 10 8 2 12 12 C 1.53695 * 108.27830 * 128.74850 * 11 10 8 13 13 N 1.46902 * 109.25226 * 54.08527 * 12 11 10 14 14 C 1.46908 * 110.99801 * 172.60671 * 13 12 11 15 15 C 1.50696 * 109.46763 * 294.30132 * 14 13 12 16 16 H 1.08003 * 120.00531 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99709 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99950 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47086 * 90.00134 * 19 17 15 21 21 H 1.48496 * 109.46979 * 209.99963 * 19 17 15 22 22 H 1.48500 * 109.47370 * 330.00355 * 19 17 15 23 23 C 1.46900 * 111.27057 * 296.75228 * 13 12 11 24 24 C 1.47081 * 120.88249 * 185.33326 * 10 8 2 25 25 H 1.08997 * 109.47372 * 295.29459 * 1 2 3 26 26 H 1.09000 * 109.46968 * 55.29226 * 1 2 3 27 27 H 1.08997 * 109.47204 * 175.29272 * 1 2 3 28 28 H 1.08997 * 109.47320 * 175.00133 * 4 2 1 29 29 H 1.08996 * 109.47434 * 54.99544 * 4 2 1 30 30 H 0.96999 * 119.99979 * 359.97438 * 6 5 4 31 31 H 0.96996 * 120.00084 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.62606 * 248.52009 * 11 10 8 33 33 H 1.09004 * 109.62345 * 9.10243 * 11 10 8 34 34 H 1.08993 * 109.64856 * 294.08514 * 12 11 10 35 35 H 1.08990 * 109.42053 * 173.94763 * 12 11 10 36 36 H 1.08996 * 109.46925 * 54.30348 * 14 13 12 37 37 H 1.09002 * 109.46808 * 174.29972 * 14 13 12 38 38 H 0.97000 * 120.00227 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49645 * 303.14838 * 23 13 12 40 40 H 1.08997 * 109.51659 * 183.08213 * 23 13 12 41 41 H 1.09003 * 109.62640 * 350.89627 * 24 10 8 42 42 H 1.08993 * 109.62619 * 111.48036 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4767 6 7 1.9852 -0.3910 3.7002 7 8 1.0108 1.0871 2.3632 8 6 2.0324 -0.7105 -1.2304 9 8 1.3426 -1.5494 -1.7703 10 7 3.2481 -0.4138 -1.7307 11 6 4.1455 0.5181 -1.0310 12 6 5.5173 -0.1578 -0.8769 13 7 5.9892 -0.6019 -2.1952 14 6 7.3710 -1.0952 -2.1209 15 6 8.2925 0.0434 -1.7669 16 1 7.8919 1.0345 -1.6129 17 6 9.6472 -0.1799 -1.6405 18 7 10.1352 -1.3864 -1.8295 19 14 10.7896 1.2316 -1.2024 20 1 10.9190 1.3236 0.2741 21 1 12.1264 0.9910 -1.8024 22 1 10.2314 2.5024 -1.7304 23 6 5.0968 -1.6198 -2.7656 24 6 3.7102 -1.0086 -2.9940 25 1 -0.3634 0.4391 0.9291 26 1 -0.3633 0.5851 -0.8448 27 1 -0.3633 -1.0242 -0.0843 28 1 3.1262 -0.7994 1.2057 29 1 1.6053 -1.7196 1.2954 30 1 2.4891 -1.2149 3.7910 31 1 1.7282 0.1098 4.4902 32 1 4.2484 1.4338 -1.6130 33 1 3.7376 0.7500 -0.0471 34 1 5.4295 -1.0179 -0.2133 35 1 6.2273 0.5548 -0.4575 36 1 7.4397 -1.8694 -1.3568 37 1 7.6608 -1.5107 -3.0861 38 1 11.0882 -1.5436 -1.7403 39 1 5.0149 -2.4597 -2.0756 40 1 5.5018 -1.9680 -3.7158 41 1 3.0145 -1.7865 -3.3085 42 1 3.7721 -0.2367 -3.7610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:40 Heat of formation + Delta-G solvation = -73.960412 kcal Electronic energy + Delta-G solvation = -23117.390063 eV Core-core repulsion = 19711.089779 eV Total energy + Delta-G solvation = -3406.300285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54907 -39.43438 -37.59490 -34.54280 -34.18475 -33.94523 -32.42218 -30.75880 -28.33606 -28.05056 -25.81877 -24.05117 -23.13349 -21.86454 -20.85668 -20.19641 -18.44545 -17.78672 -17.38002 -16.66578 -16.42330 -15.59670 -15.48865 -15.12640 -14.81219 -14.45637 -14.27590 -13.98552 -13.65431 -13.50248 -13.31089 -13.04495 -12.58515 -12.26749 -11.94606 -11.81805 -11.40568 -11.30065 -11.17552 -11.08742 -10.95010 -10.78902 -10.65135 -10.56914 -10.23516 -9.94726 -9.92378 -9.53089 -9.31634 -8.54481 -8.45279 -7.37407 -6.10381 -4.12599 2.37542 2.60804 3.05188 3.26126 3.33432 3.36994 3.37773 4.35101 4.39490 4.58974 4.69012 4.75299 4.88562 5.20379 5.21937 5.25850 5.34663 5.39248 5.48176 5.53030 5.61134 5.73771 5.83117 5.90620 6.00882 6.02063 6.22910 6.24703 6.39641 6.41355 6.50490 6.66487 7.02085 7.17489 7.22490 7.53382 7.70244 7.97039 7.98667 8.07429 8.25694 8.42858 8.94700 9.52253 11.00377 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.004241 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.301934 B = 6600.826682 C = 7605.894669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.101 0.899 4 C -0.137 4.137 5 C 0.522 3.478 6 N -0.856 5.856 7 O -0.538 6.538 8 C 0.517 3.483 9 O -0.547 6.547 10 N -0.607 5.607 11 C 0.105 3.895 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.042 3.958 24 C 0.116 3.884 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.403 0.597 31 H 0.401 0.599 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.024 0.976 35 H 0.097 0.903 36 H -0.009 1.009 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.992 0.617 7.983 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.119 0.881 4 C -0.178 4.178 5 C 0.307 3.693 6 N -0.420 5.420 7 O -0.415 6.415 8 C 0.305 3.695 9 O -0.425 6.425 10 N -0.340 5.340 11 C -0.018 4.018 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.006 4.006 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.231 0.769 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.009 0.991 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.577 1.108 7.086 17.149 hybrid contribution 1.193 -0.275 1.173 1.696 sum -14.384 0.833 8.259 16.607 Atomic orbital electron populations 1.21760 0.92030 1.02695 1.03116 1.21044 0.98790 1.00566 0.91095 0.88107 1.21666 1.03632 1.00680 0.91809 1.20519 0.78367 0.85268 0.85106 1.43882 1.60161 1.29686 1.08264 1.90732 1.39588 1.24497 1.86656 1.20568 0.80812 0.82515 0.85612 1.90652 1.56530 1.33490 1.61851 1.48275 1.15685 1.45674 1.24361 1.22180 0.90019 0.92823 0.96752 1.22408 0.94417 0.99407 0.91547 1.62069 1.04257 1.37585 1.22124 1.19729 0.81610 0.95082 0.96687 1.21134 0.91351 0.95352 1.47054 0.91796 1.24988 0.98254 0.95756 0.95504 1.69952 1.13421 1.20527 1.49774 0.86505 0.80070 0.82482 0.78412 1.20744 1.21233 1.19710 1.22397 0.92494 0.93487 1.00383 1.21768 0.95292 0.98435 0.85107 0.90343 0.92496 0.91975 0.88023 0.87926 0.76860 0.76789 0.90439 0.90164 0.95779 0.88452 0.99133 0.94996 0.92844 0.95571 0.90077 0.89391 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.61 37.16 0.32 -1.33 16 2 C -0.09 -1.10 1.51 -91.77 -0.14 -1.24 16 3 H 0.10 1.18 6.59 -51.93 -0.34 0.84 16 4 C -0.14 -1.31 4.87 -27.88 -0.14 -1.45 16 5 C 0.52 5.12 7.78 -10.98 -0.09 5.03 16 6 N -0.86 -5.31 8.87 31.22 0.28 -5.04 16 7 O -0.54 -7.18 14.82 5.56 0.08 -7.10 16 8 C 0.52 7.53 6.80 -10.99 -0.07 7.46 16 9 O -0.55 -9.55 15.46 5.56 0.09 -9.47 16 10 N -0.61 -8.90 3.00 -172.18 -0.52 -9.41 16 11 C 0.11 1.45 6.15 -3.36 -0.02 1.43 16 12 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 13 N -0.54 -10.74 4.62 -235.47 -1.09 -11.83 16 14 C 0.19 4.79 4.72 -4.97 -0.02 4.77 16 15 C -0.51 -13.58 8.41 -34.44 -0.29 -13.87 16 16 H 0.06 1.67 7.13 -52.48 -0.37 1.29 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -25.83 13.29 55.43 0.74 -25.10 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 24 C 0.12 1.78 6.61 -3.60 -0.02 1.76 16 25 H 0.08 0.94 5.88 -51.93 -0.31 0.64 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 28 H 0.10 0.91 7.20 -51.93 -0.37 0.54 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.40 1.50 8.83 -40.82 -0.36 1.14 16 31 H 0.40 2.12 8.93 -40.82 -0.36 1.75 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.91 4.95 -51.93 -0.26 0.66 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 1.79 6.67 -51.93 -0.35 1.45 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 41 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -32.94 335.08 -7.41 -40.35 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.41 Total: 1.18 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.61 Total: 5.57 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.59 Total: -51.37 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.17 Total: -16.57 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.94 -7.41 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.607 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds