Wall clock time and date at job start Tue Mar 31 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47353 * 2 1 4 4 C 1.53002 * 109.47000 * 119.99543 * 2 1 3 5 5 C 1.50706 * 109.47222 * 295.00025 * 4 2 1 6 6 N 1.34774 * 120.00340 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99658 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.47370 * 239.99344 * 2 1 3 9 9 O 1.21280 * 119.99734 * 334.24514 * 8 2 1 10 10 N 1.34771 * 120.00029 * 154.24401 * 8 2 1 11 11 C 1.47087 * 120.88283 * 5.05785 * 10 8 2 12 12 C 1.53695 * 108.27830 * 128.74850 * 11 10 8 13 13 N 1.46902 * 109.25226 * 54.08527 * 12 11 10 14 14 C 1.46908 * 110.99801 * 172.60671 * 13 12 11 15 15 C 1.50696 * 109.46763 * 294.30132 * 14 13 12 16 16 H 1.08003 * 120.00531 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99709 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99950 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47086 * 90.00134 * 19 17 15 21 21 H 1.48496 * 109.46979 * 209.99963 * 19 17 15 22 22 H 1.48500 * 109.47370 * 330.00355 * 19 17 15 23 23 C 1.46900 * 111.27057 * 296.75228 * 13 12 11 24 24 C 1.47081 * 120.88249 * 185.33326 * 10 8 2 25 25 H 1.08997 * 109.47372 * 295.29459 * 1 2 3 26 26 H 1.09000 * 109.46968 * 55.29226 * 1 2 3 27 27 H 1.08997 * 109.47204 * 175.29272 * 1 2 3 28 28 H 1.08997 * 109.47320 * 175.00133 * 4 2 1 29 29 H 1.08996 * 109.47434 * 54.99544 * 4 2 1 30 30 H 0.96999 * 119.99979 * 359.97438 * 6 5 4 31 31 H 0.96996 * 120.00084 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.62606 * 248.52009 * 11 10 8 33 33 H 1.09004 * 109.62345 * 9.10243 * 11 10 8 34 34 H 1.08993 * 109.64856 * 294.08514 * 12 11 10 35 35 H 1.08990 * 109.42053 * 173.94763 * 12 11 10 36 36 H 1.08996 * 109.46925 * 54.30348 * 14 13 12 37 37 H 1.09002 * 109.46808 * 174.29972 * 14 13 12 38 38 H 0.97000 * 120.00227 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49645 * 303.14838 * 23 13 12 40 40 H 1.08997 * 109.51659 * 183.08213 * 23 13 12 41 41 H 1.09003 * 109.62640 * 350.89627 * 24 10 8 42 42 H 1.08993 * 109.62619 * 111.48036 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4767 6 7 1.9852 -0.3910 3.7002 7 8 1.0108 1.0871 2.3632 8 6 2.0324 -0.7105 -1.2304 9 8 1.3426 -1.5494 -1.7703 10 7 3.2481 -0.4138 -1.7307 11 6 4.1455 0.5181 -1.0310 12 6 5.5173 -0.1578 -0.8769 13 7 5.9892 -0.6019 -2.1952 14 6 7.3710 -1.0952 -2.1209 15 6 8.2925 0.0434 -1.7669 16 1 7.8919 1.0345 -1.6129 17 6 9.6472 -0.1799 -1.6405 18 7 10.1352 -1.3864 -1.8295 19 14 10.7896 1.2316 -1.2024 20 1 10.9190 1.3236 0.2741 21 1 12.1264 0.9910 -1.8024 22 1 10.2314 2.5024 -1.7304 23 6 5.0968 -1.6198 -2.7656 24 6 3.7102 -1.0086 -2.9940 25 1 -0.3634 0.4391 0.9291 26 1 -0.3633 0.5851 -0.8448 27 1 -0.3633 -1.0242 -0.0843 28 1 3.1262 -0.7994 1.2057 29 1 1.6053 -1.7196 1.2954 30 1 2.4891 -1.2149 3.7910 31 1 1.7282 0.1098 4.4902 32 1 4.2484 1.4338 -1.6130 33 1 3.7376 0.7500 -0.0471 34 1 5.4295 -1.0179 -0.2133 35 1 6.2273 0.5548 -0.4575 36 1 7.4397 -1.8694 -1.3568 37 1 7.6608 -1.5107 -3.0861 38 1 11.0882 -1.5436 -1.7403 39 1 5.0149 -2.4597 -2.0756 40 1 5.5018 -1.9680 -3.7158 41 1 3.0145 -1.7865 -3.3085 42 1 3.7721 -0.2367 -3.7610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:39 Heat of formation + Delta-G solvation = -99.840373 kcal Electronic energy + Delta-G solvation = -23118.512303 eV Core-core repulsion = 19711.089779 eV Total energy + Delta-G solvation = -3407.422524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62786 -40.37049 -39.00666 -35.99074 -35.29169 -34.62240 -34.31190 -32.07806 -30.01460 -28.89222 -27.46374 -25.29081 -24.52720 -23.47350 -21.93428 -21.28247 -19.59952 -18.73327 -18.47102 -18.14960 -17.60976 -16.69734 -16.62068 -16.40231 -16.26054 -15.98156 -15.53781 -15.31424 -15.05316 -14.70815 -14.31287 -14.20441 -14.04086 -13.63814 -13.47527 -13.05239 -12.75843 -12.74486 -12.56926 -12.40794 -12.31163 -12.22632 -12.11634 -12.00928 -11.73910 -11.26429 -11.13313 -10.70424 -10.60232 -10.54859 -9.77199 -9.03339 -8.18746 -6.28735 1.44250 1.46014 1.48771 1.57063 1.63665 1.91401 2.42310 2.64851 3.14072 3.23802 3.46031 3.68084 3.83246 3.96812 4.02935 4.16919 4.24251 4.26605 4.38541 4.44878 4.49928 4.59803 4.65124 4.74992 4.86259 4.95351 4.96101 5.04072 5.08527 5.21471 5.24795 5.29510 5.45787 5.65813 5.94583 6.04302 6.24523 6.41320 6.46111 6.58029 6.87447 7.08570 7.36186 7.41459 8.92462 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.004241 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.301934 B = 6600.826682 C = 7605.894669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 H 0.106 0.894 4 C -0.134 4.134 5 C 0.524 3.476 6 N -0.838 5.838 7 O -0.577 6.577 8 C 0.520 3.480 9 O -0.577 6.577 10 N -0.609 5.609 11 C 0.117 3.883 12 C 0.051 3.949 13 N -0.540 5.540 14 C 0.209 3.791 15 C -0.520 4.520 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.045 3.955 24 C 0.125 3.875 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.417 0.583 31 H 0.409 0.591 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.023 0.977 35 H 0.086 0.914 36 H -0.038 1.038 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.018 0.982 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.479 1.880 9.223 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 H 0.124 0.876 4 C -0.174 4.174 5 C 0.309 3.691 6 N -0.402 5.402 7 O -0.457 6.457 8 C 0.310 3.690 9 O -0.457 6.457 10 N -0.342 5.342 11 C -0.005 4.005 12 C -0.078 4.078 13 N -0.265 5.265 14 C 0.082 3.918 15 C -0.558 4.558 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.084 4.084 24 C 0.002 3.998 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.248 0.752 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.041 0.959 35 H 0.104 0.896 36 H -0.020 1.020 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.069 2.359 8.364 18.268 hybrid contribution 1.312 -0.741 0.794 1.704 sum -14.756 1.618 9.158 17.442 Atomic orbital electron populations 1.21694 0.92110 1.02244 1.02951 1.21028 0.98670 1.00663 0.90682 0.87550 1.21644 1.04170 1.00873 0.90749 1.20490 0.78003 0.84703 0.85928 1.43734 1.59040 1.29953 1.07465 1.90724 1.41583 1.26165 1.87228 1.20999 0.80247 0.81913 0.85884 1.90644 1.57280 1.34901 1.62847 1.48337 1.16006 1.45684 1.24128 1.22141 0.87821 0.92107 0.98476 1.22444 0.96115 0.99244 0.89966 1.61987 1.02589 1.37949 1.23990 1.19371 0.84447 0.93916 0.94026 1.21453 0.91939 0.95856 1.46595 0.91302 1.25887 1.00020 0.98260 0.95332 1.70086 1.13828 1.22750 1.50975 0.85404 0.77565 0.79312 0.78474 1.19708 1.21282 1.18759 1.22411 0.93244 0.92863 0.99901 1.21633 0.93636 0.98718 0.85819 0.90267 0.92883 0.92502 0.87067 0.86837 0.75208 0.75931 0.89826 0.87124 0.95879 0.89553 1.02004 0.97825 0.92769 0.96332 0.90223 0.89135 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.61 71.98 0.62 -2.35 16 2 C -0.09 -1.92 1.51 -11.54 -0.02 -1.93 16 3 H 0.11 2.21 6.59 -2.39 -0.02 2.20 16 4 C -0.13 -2.23 4.87 29.85 0.15 -2.08 16 5 C 0.52 9.03 7.78 87.66 0.68 9.72 16 6 N -0.84 -8.20 8.87 -173.53 -1.54 -9.74 16 7 O -0.58 -14.36 14.82 -3.03 -0.04 -14.41 16 8 C 0.52 14.22 6.80 87.66 0.60 14.82 16 9 O -0.58 -19.43 15.46 -3.03 -0.05 -19.48 16 10 N -0.61 -16.74 3.00 -817.04 -2.45 -19.20 16 11 C 0.12 2.96 6.15 86.50 0.53 3.50 16 12 C 0.05 1.71 5.47 86.54 0.47 2.19 16 13 N -0.54 -21.66 4.62 -898.88 -4.15 -25.82 16 14 C 0.21 10.59 4.72 85.55 0.40 10.99 16 15 C -0.52 -27.80 8.41 25.60 0.22 -27.59 16 16 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.94 -54.70 13.29 21.45 0.28 -54.41 16 19 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 23 C 0.04 1.56 5.62 86.38 0.49 2.04 16 24 C 0.12 3.67 6.61 86.35 0.57 4.24 16 25 H 0.08 1.80 5.88 -2.39 -0.01 1.78 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.32 7.69 -2.39 -0.02 1.30 16 28 H 0.11 1.66 7.20 -2.39 -0.02 1.64 16 29 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.42 1.89 8.83 -92.71 -0.82 1.07 16 31 H 0.41 3.30 8.93 -92.71 -0.83 2.47 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.11 2.17 4.95 -2.38 -0.01 2.15 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 3.10 6.67 -2.39 -0.02 3.08 16 36 H -0.04 -2.09 8.12 -2.39 -0.02 -2.11 16 37 H 0.00 0.20 7.97 -2.39 -0.02 0.18 16 38 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 2.75 7.99 -2.39 -0.02 2.73 16 41 H 0.09 2.67 7.04 -2.39 -0.02 2.65 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.00 335.08 -1.36 -72.36 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -0.60 Total: 12.16 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.17 Total: 14.17 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -7.86 Total: -109.16 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.09 Total: -33.89 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.00 -1.36 -72.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.481 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds