Wall clock time and date at job start Tue Mar 31 2020 02:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 C 1.50694 * 109.47202 * 120.00255 * 2 1 3 5 5 N 1.34771 * 120.00275 * 299.99775 * 4 2 1 6 6 O 1.21290 * 119.99796 * 119.99772 * 4 2 1 7 7 C 1.50700 * 109.46689 * 240.00523 * 2 1 3 8 8 O 1.21281 * 120.00108 * 3.11227 * 7 2 1 9 9 N 1.34775 * 120.00018 * 183.11500 * 7 2 1 10 10 C 1.47081 * 120.88089 * 355.45601 * 9 7 2 11 11 C 1.53694 * 108.27591 * 128.75449 * 10 9 7 12 12 N 1.46896 * 109.25760 * 54.08756 * 11 10 9 13 13 C 1.46900 * 111.00534 * 172.60483 * 12 11 10 14 14 C 1.50702 * 109.47064 * 294.30439 * 13 12 11 15 15 H 1.08003 * 119.99993 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99679 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00225 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99506 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47234 * 60.00145 * 18 16 14 20 20 H 1.48499 * 109.46938 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47561 * 299.99715 * 18 16 14 22 22 C 1.46904 * 111.26828 * 296.75596 * 12 11 10 23 23 C 1.47079 * 120.88628 * 175.73889 * 9 7 2 24 24 H 1.09009 * 109.46610 * 295.07083 * 1 2 3 25 25 H 1.09003 * 109.47217 * 55.06710 * 1 2 3 26 26 H 1.08995 * 109.47482 * 175.07499 * 1 2 3 27 27 H 1.09000 * 109.47072 * 185.50765 * 3 2 1 28 28 H 1.09001 * 109.46889 * 305.50783 * 3 2 1 29 29 H 1.08997 * 109.46812 * 65.51162 * 3 2 1 30 30 H 0.96999 * 120.00286 * 179.97438 * 5 4 2 31 31 H 0.96999 * 120.00007 * 359.72641 * 5 4 2 32 32 H 1.08994 * 109.63376 * 248.52560 * 10 9 7 33 33 H 1.09002 * 109.62456 * 9.11144 * 10 9 7 34 34 H 1.08996 * 109.65169 * 294.07930 * 11 10 9 35 35 H 1.09008 * 109.42387 * 173.94839 * 11 10 9 36 36 H 1.08999 * 109.46694 * 54.30113 * 13 12 11 37 37 H 1.09001 * 109.47058 * 174.29960 * 13 12 11 38 38 H 0.96999 * 119.99761 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.49103 * 303.14206 * 22 12 11 40 40 H 1.09000 * 109.49097 * 183.06002 * 22 12 11 41 41 H 1.08999 * 109.62715 * 350.89569 * 23 9 7 42 42 H 1.08999 * 109.62861 * 111.47222 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7069 -0.2501 2.4545 6 8 2.7297 -1.6966 1.1190 7 6 2.0323 -0.7103 -1.2306 8 8 1.2456 -1.1215 -2.0570 9 7 3.3557 -0.8887 -1.4127 10 6 4.3312 -0.3125 -0.4748 11 6 5.2921 -1.4278 -0.0333 12 7 5.8752 -2.0638 -1.2221 13 6 6.9293 -3.0156 -0.8466 14 6 8.0830 -2.2690 -0.2280 15 1 8.0379 -1.1949 -0.1245 16 6 9.1966 -2.9572 0.2050 17 7 9.2517 -4.2651 0.0786 18 14 10.6269 -2.0317 0.9711 19 1 10.1582 -1.3099 2.1814 20 1 11.6925 -2.9938 1.3508 21 1 11.1671 -1.0557 -0.0092 22 6 4.8425 -2.7168 -2.0377 23 6 3.8630 -1.6595 -2.5580 24 1 -0.3633 0.4355 0.9309 25 1 -0.3634 0.5885 -0.8425 26 1 -0.3634 -1.0238 -0.0882 27 1 3.1256 1.4441 -0.0986 28 1 1.5984 1.9840 -0.8366 29 1 1.7595 1.9270 0.9352 30 1 2.0299 -0.7076 3.2464 31 1 1.1525 0.5409 2.5436 32 1 4.8901 0.4817 -0.9697 33 1 3.8103 0.0891 0.3943 34 1 4.7474 -2.1724 0.5473 35 1 6.0874 -1.0004 0.5775 36 1 6.5325 -3.7319 -0.1272 37 1 7.2737 -3.5454 -1.7347 38 1 10.0350 -4.7492 0.3835 39 1 4.3041 -3.4434 -1.4293 40 1 5.3117 -3.2241 -2.8807 41 1 3.0325 -2.1487 -3.0669 42 1 4.3777 -0.9922 -3.2494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:05 Heat of formation + Delta-G solvation = -83.095612 kcal Electronic energy + Delta-G solvation = -24070.349041 eV Core-core repulsion = 20663.652624 eV Total energy + Delta-G solvation = -3406.696417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30654 -39.98642 -39.03266 -36.04534 -35.96855 -34.50307 -33.99298 -32.06881 -30.03211 -28.33987 -27.48172 -25.37911 -24.66369 -23.95388 -22.81354 -21.11778 -20.00563 -18.97237 -18.49924 -17.85417 -17.42789 -16.71729 -16.62096 -16.37490 -16.05030 -15.93849 -15.45331 -15.31749 -15.07118 -14.85163 -14.18173 -13.94331 -13.72253 -13.44061 -13.36204 -13.17626 -13.02575 -12.96893 -12.77662 -12.56021 -12.50471 -12.30164 -12.10506 -12.07982 -11.68338 -11.31492 -10.98849 -10.76964 -10.65614 -10.60645 -9.74763 -9.06307 -8.20209 -6.31480 1.38135 1.41836 1.46194 1.52430 1.53975 1.93319 2.40969 2.54024 3.11539 3.18022 3.24532 3.73112 3.80497 3.90386 4.02212 4.04201 4.20136 4.26822 4.43114 4.48535 4.65250 4.66307 4.68858 4.76113 4.79488 4.83583 4.93081 5.03083 5.16860 5.17792 5.22540 5.24693 5.42577 5.62456 5.89743 6.00913 6.21249 6.37362 6.42138 6.54933 6.83458 7.02728 7.31277 7.38229 8.91472 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.004755 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.804740 B = 5887.410989 C = 6439.034190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C -0.153 4.153 4 C 0.519 3.481 5 N -0.824 5.824 6 O -0.570 6.570 7 C 0.529 3.471 8 O -0.579 6.579 9 N -0.594 5.594 10 C 0.126 3.874 11 C 0.055 3.945 12 N -0.535 5.535 13 C 0.209 3.791 14 C -0.522 4.522 15 H 0.069 0.931 16 C -0.001 4.001 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.045 3.955 23 C 0.127 3.873 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.411 0.589 31 H 0.420 0.580 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.023 0.977 35 H 0.074 0.926 36 H -0.049 1.049 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.004 0.996 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 16.055 4.445 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.107 4.107 3 C -0.210 4.210 4 C 0.303 3.697 5 N -0.389 5.389 6 O -0.449 6.449 7 C 0.317 3.683 8 O -0.459 6.459 9 N -0.325 5.325 10 C 0.004 3.996 11 C -0.074 4.074 12 N -0.259 5.259 13 C 0.083 3.917 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.084 4.084 23 C 0.004 3.996 24 H 0.124 0.876 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.244 0.756 31 H 0.253 0.747 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.041 0.959 35 H 0.093 0.907 36 H -0.032 1.032 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.411 15.457 3.510 23.546 hybrid contribution 0.551 -1.207 1.071 1.705 sum -16.861 14.250 4.580 22.546 Atomic orbital electron populations 1.21696 0.88214 1.02852 1.05042 1.21141 1.00687 0.98960 0.89909 1.22276 1.02663 0.89595 1.06452 1.20314 0.79221 0.84057 0.86143 1.43551 1.55134 1.33776 1.06474 1.90919 1.38687 1.28017 1.87247 1.20536 0.81482 0.78831 0.87431 1.90633 1.55541 1.52806 1.46945 1.48053 1.05733 1.51980 1.26740 1.22227 0.89337 0.95022 0.93038 1.22372 0.96320 0.96754 0.91934 1.62079 1.10801 1.32595 1.20453 1.19364 0.89385 0.89769 0.93172 1.21397 1.01106 0.94318 1.39192 0.91277 1.26004 1.01693 0.95705 0.96476 1.70110 1.30766 1.08432 1.48533 0.85352 0.77665 0.78076 0.79010 1.18941 1.21070 1.18932 1.22404 0.92938 0.95454 0.97643 1.21624 0.96314 0.93519 0.88106 0.87552 0.90146 0.93862 0.91054 0.89459 0.87009 0.75642 0.74721 0.89601 0.87811 0.95924 0.90738 1.03179 0.97699 0.92707 0.97814 0.89917 0.89445 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 7.74 71.98 0.56 -1.33 16 2 C -0.10 -2.04 0.60 -53.67 -0.03 -2.07 16 3 C -0.15 -1.87 8.09 71.98 0.58 -1.29 16 4 C 0.52 11.72 5.08 87.66 0.45 12.16 16 5 N -0.82 -9.48 8.59 -173.54 -1.49 -10.97 16 6 O -0.57 -19.86 12.82 -3.06 -0.04 -19.90 16 7 C 0.53 16.47 6.04 87.66 0.53 16.99 16 8 O -0.58 -21.28 15.43 -3.03 -0.05 -21.33 16 9 N -0.59 -19.58 2.70 -817.06 -2.20 -21.78 16 10 C 0.13 3.94 4.01 86.50 0.35 4.29 16 11 C 0.05 2.31 5.21 86.54 0.45 2.76 16 12 N -0.53 -24.90 4.62 -898.89 -4.15 -29.05 16 13 C 0.21 11.89 4.72 85.56 0.40 12.29 16 14 C -0.52 -30.19 8.41 25.60 0.22 -29.98 16 15 H 0.07 3.82 7.13 -2.91 -0.02 3.80 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 18 Si 0.98 44.39 29.54 68.60 2.03 46.41 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 C 0.04 1.86 5.62 86.38 0.49 2.35 16 23 C 0.13 4.40 6.58 86.35 0.57 4.97 16 24 H 0.11 0.73 7.44 -2.38 -0.02 0.71 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 0.92 8.00 -2.39 -0.02 0.90 16 27 H 0.07 1.06 4.91 -2.39 -0.01 1.04 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.49 7.41 -2.39 -0.02 0.47 16 30 H 0.41 4.55 8.93 -92.71 -0.83 3.72 16 31 H 0.42 1.29 7.54 -92.71 -0.70 0.59 16 32 H 0.09 2.43 8.13 -2.39 -0.02 2.41 16 33 H 0.10 2.69 3.23 -2.39 -0.01 2.68 16 34 H 0.02 1.08 6.20 -2.39 -0.01 1.07 16 35 H 0.07 3.28 6.67 -2.38 -0.02 3.26 16 36 H -0.05 -3.14 8.12 -2.39 -0.02 -3.16 16 37 H 0.00 0.30 7.97 -2.39 -0.02 0.28 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 40 H 0.08 3.30 7.99 -2.39 -0.02 3.28 16 41 H 0.09 3.01 7.09 -2.39 -0.02 2.99 16 42 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -81.74 323.49 -1.08 -82.82 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -0.47 Total: 10.10 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 5.01 Total: 21.54 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -7.56 Total: -119.65 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.09 Total: -41.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -81.74 -1.08 -82.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.273 kcal (2) G-P(sol) polarization free energy of solvation -81.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds