Wall clock time and date at job start Tue Mar 31 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47044 * 2 1 4 4 C 1.50699 * 109.47196 * 240.00084 * 2 1 3 5 5 H 1.08003 * 119.99833 * 239.99803 * 4 2 1 6 6 C 1.37871 * 120.00296 * 60.00195 * 4 2 1 7 7 N 1.31515 * 119.99792 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00200 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47342 * 59.99466 * 8 6 4 10 10 H 1.48498 * 109.47595 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47218 * 300.00004 * 8 6 4 12 12 N 1.46506 * 109.46996 * 119.99859 * 2 1 3 13 13 C 1.46497 * 119.99959 * 60.00423 * 12 2 1 14 14 C 1.34776 * 120.00027 * 240.00146 * 12 2 1 15 15 O 1.21285 * 119.99659 * 359.97438 * 14 12 2 16 16 C 1.50694 * 120.00262 * 180.02562 * 14 12 2 17 17 N 1.46499 * 109.47550 * 180.02562 * 16 14 12 18 18 C 1.34777 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 16 21 21 H 1.09004 * 109.90159 * 318.61711 * 20 18 17 22 22 C 1.53992 * 109.91795 * 79.71914 * 20 18 17 23 23 C 1.54598 * 105.13693 * 120.57690 * 22 20 18 24 24 C 1.54939 * 102.91963 * 21.95981 * 23 22 20 25 25 N 1.47901 * 109.91384 * 197.31084 * 20 18 17 26 26 H 1.09003 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47160 * 300.00011 * 1 2 3 28 28 H 1.09001 * 109.46889 * 60.00430 * 1 2 3 29 29 H 0.96996 * 119.99946 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47091 * 269.99660 * 13 12 2 31 31 H 1.08999 * 109.47216 * 29.99695 * 13 12 2 32 32 H 1.08999 * 109.47503 * 149.99811 * 13 12 2 33 33 H 1.08998 * 109.47333 * 59.99721 * 16 14 12 34 34 H 1.09002 * 109.47271 * 300.00155 * 16 14 12 35 35 H 0.97000 * 119.99484 * 359.97438 * 17 16 14 36 36 H 1.08991 * 110.31186 * 239.49130 * 22 20 18 37 37 H 1.08995 * 110.30876 * 1.66407 * 22 20 18 38 38 H 1.09004 * 110.72220 * 140.31568 * 23 22 20 39 39 H 1.08997 * 110.72552 * 263.60084 * 23 22 20 40 40 H 1.08998 * 110.66984 * 81.02193 * 24 23 22 41 41 H 1.09005 * 110.66215 * 203.98519 * 24 23 22 42 42 H 1.00895 * 111.00048 * 335.83198 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8262 -0.4206 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2959 -0.7461 3.3136 17 7 4.1092 0.1749 4.1114 18 6 4.6677 -0.2447 5.2640 19 8 4.4965 -1.3847 5.6409 20 6 5.4991 0.7045 6.0879 21 1 6.1355 1.3025 5.4354 22 6 4.5812 1.6254 6.9129 23 6 4.9645 1.3616 8.3872 24 6 6.3963 0.7805 8.2743 25 7 6.3281 -0.0554 7.0485 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7083 1.1608 -3.4843 30 1 0.7376 -2.1444 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4629 -2.5819 1.9864 33 1 3.9017 -1.6022 3.0167 34 1 2.4484 -1.0891 3.9070 35 1 4.2463 1.0866 3.8097 36 1 4.7623 2.6690 6.6559 37 1 3.5357 1.3688 6.7422 38 1 4.9692 2.2910 8.9568 39 1 4.2879 0.6354 8.8377 40 1 7.1276 1.5799 8.1547 41 1 6.6338 0.1707 9.1460 42 1 5.9179 -0.9556 7.2469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602593873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:59 Heat of formation + Delta-G solvation = -69.146252 kcal Electronic energy + Delta-G solvation = -22543.047878 eV Core-core repulsion = 19136.956351 eV Total energy + Delta-G solvation = -3406.091527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45001 -39.21675 -37.62574 -35.61473 -34.35048 -32.94928 -30.39809 -30.20929 -29.49544 -27.09207 -26.12168 -25.27073 -22.80242 -21.61153 -21.11657 -20.23009 -18.75804 -17.82317 -16.61036 -16.57434 -16.03671 -15.66815 -15.62383 -15.31149 -14.82160 -14.33259 -14.07464 -14.03987 -13.72215 -13.05474 -13.01175 -12.65343 -12.52310 -12.16644 -11.98609 -11.76010 -11.68591 -11.55571 -11.46034 -11.12888 -11.09952 -10.89640 -10.78577 -10.33570 -10.22774 -9.94641 -9.30471 -9.17710 -9.15503 -8.96337 -8.48761 -7.74414 -6.13301 -4.21882 2.47916 2.94555 3.13872 3.24941 3.30209 3.32547 3.86355 3.97078 4.34441 4.35037 4.48630 4.67461 4.79416 4.94504 5.10807 5.13667 5.18369 5.39415 5.44076 5.46010 5.51362 5.57643 5.62502 5.70368 5.83982 5.96433 6.25443 6.31734 6.37700 6.68079 6.75021 6.97859 7.09545 7.27219 7.42593 7.46831 7.64033 7.92403 8.07872 8.12154 8.38614 8.69562 8.87348 9.44718 10.92060 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.003133 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.522606 B = 8934.296901 C = 9001.470516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.585 5.585 13 C 0.078 3.922 14 C 0.498 3.502 15 O -0.552 6.552 16 C 0.099 3.901 17 N -0.708 5.708 18 C 0.514 3.486 19 O -0.545 6.545 20 C 0.055 3.945 21 H 0.110 0.890 22 C -0.141 4.141 23 C -0.157 4.157 24 C 0.042 3.958 25 N -0.658 5.658 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.094 0.906 29 H 0.265 0.735 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.413 0.587 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -0.706 17.883 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.066 4.066 14 C 0.283 3.717 15 O -0.432 6.432 16 C -0.028 4.028 17 N -0.363 5.363 18 C 0.300 3.700 19 O -0.423 6.423 20 C -0.058 4.058 21 H 0.128 0.872 22 C -0.181 4.181 23 C -0.196 4.196 24 C -0.088 4.088 25 N -0.290 5.290 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.800 -0.660 17.557 18.502 hybrid contribution -0.692 -0.252 -0.763 1.060 sum 5.108 -0.912 16.795 17.578 Atomic orbital electron populations 1.22090 0.97998 0.99542 1.00877 1.18995 0.90992 0.94518 0.79673 0.91798 1.21267 1.32130 1.13176 0.90248 0.92188 1.24887 0.94848 0.94952 0.99003 1.69864 1.36114 1.22544 1.23993 0.86530 0.79273 0.79579 0.81869 1.20183 1.21131 1.20187 1.48221 1.48229 1.11831 1.23260 1.21701 0.99164 0.82918 1.02821 1.20233 0.79785 0.87258 0.84387 1.90639 1.58846 1.17010 1.76705 1.21194 0.96433 0.93189 0.91982 1.45716 1.51349 1.16782 1.22415 1.20643 0.79758 0.88536 0.81088 1.90667 1.61281 1.19675 1.70634 1.22416 0.93759 0.94099 0.95545 0.87232 1.22765 1.00053 1.00382 0.94886 1.23123 0.98186 1.02018 0.96249 1.23163 0.95914 0.97337 0.92356 1.62842 1.50021 1.06334 1.09841 0.95038 0.96998 0.88720 0.92541 0.93442 0.89663 0.92501 0.88697 0.88972 0.74837 0.89869 0.90846 0.90412 0.91247 0.89925 0.90377 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.39 2.64 -69.08 -0.18 6.20 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.96 7.99 -34.44 -0.28 -14.24 16 5 H 0.06 1.55 7.33 -52.48 -0.38 1.17 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.58 -11.93 2.75 -175.26 -0.48 -12.41 16 13 C 0.08 1.25 9.24 59.85 0.55 1.80 16 14 C 0.50 9.67 7.74 -10.99 -0.09 9.58 16 15 O -0.55 -12.47 14.99 5.55 0.08 -12.38 16 16 C 0.10 1.51 4.71 -5.20 -0.02 1.48 16 17 N -0.71 -9.91 5.53 -61.47 -0.34 -10.25 16 18 C 0.51 6.97 6.87 -10.98 -0.08 6.89 16 19 O -0.55 -8.81 15.59 5.55 0.09 -8.72 16 20 C 0.06 0.59 3.81 -67.80 -0.26 0.33 16 21 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 22 C -0.14 -1.25 6.56 -25.37 -0.17 -1.42 16 23 C -0.16 -1.19 7.06 -24.87 -0.18 -1.36 16 24 C 0.04 0.33 7.55 -1.90 -0.01 0.32 16 25 N -0.66 -7.06 7.39 -104.34 -0.77 -7.83 16 26 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 32 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 33 H 0.10 1.39 7.40 -51.93 -0.38 1.00 16 34 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.41 5.67 7.44 -40.82 -0.30 5.37 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.35 4.17 7.31 -39.29 -0.29 3.88 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -30.88 339.67 -7.63 -38.51 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.47 Total: 8.12 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.47 Total: 8.19 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.97 Total: -54.50 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.17 Total: -21.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.88 -7.63 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.634 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds