Wall clock time and date at job start Tue Mar 31 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47044 * 2 1 4 4 C 1.50699 * 109.47196 * 240.00084 * 2 1 3 5 5 H 1.08003 * 119.99833 * 239.99803 * 4 2 1 6 6 C 1.37871 * 120.00296 * 60.00195 * 4 2 1 7 7 N 1.31515 * 119.99792 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00200 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47342 * 59.99466 * 8 6 4 10 10 H 1.48498 * 109.47595 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47218 * 300.00004 * 8 6 4 12 12 N 1.46506 * 109.46996 * 119.99859 * 2 1 3 13 13 C 1.46497 * 119.99959 * 60.00423 * 12 2 1 14 14 C 1.34776 * 120.00027 * 240.00146 * 12 2 1 15 15 O 1.21285 * 119.99659 * 359.97438 * 14 12 2 16 16 C 1.50694 * 120.00262 * 180.02562 * 14 12 2 17 17 N 1.46499 * 109.47550 * 180.02562 * 16 14 12 18 18 C 1.34777 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 16 21 21 H 1.09004 * 109.90159 * 318.61711 * 20 18 17 22 22 C 1.53992 * 109.91795 * 79.71914 * 20 18 17 23 23 C 1.54598 * 105.13693 * 120.57690 * 22 20 18 24 24 C 1.54939 * 102.91963 * 21.95981 * 23 22 20 25 25 N 1.47901 * 109.91384 * 197.31084 * 20 18 17 26 26 H 1.09003 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47160 * 300.00011 * 1 2 3 28 28 H 1.09001 * 109.46889 * 60.00430 * 1 2 3 29 29 H 0.96996 * 119.99946 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47091 * 269.99660 * 13 12 2 31 31 H 1.08999 * 109.47216 * 29.99695 * 13 12 2 32 32 H 1.08999 * 109.47503 * 149.99811 * 13 12 2 33 33 H 1.08998 * 109.47333 * 59.99721 * 16 14 12 34 34 H 1.09002 * 109.47271 * 300.00155 * 16 14 12 35 35 H 0.97000 * 119.99484 * 359.97438 * 17 16 14 36 36 H 1.08991 * 110.31186 * 239.49130 * 22 20 18 37 37 H 1.08995 * 110.30876 * 1.66407 * 22 20 18 38 38 H 1.09004 * 110.72220 * 140.31568 * 23 22 20 39 39 H 1.08997 * 110.72552 * 263.60084 * 23 22 20 40 40 H 1.08998 * 110.66984 * 81.02193 * 24 23 22 41 41 H 1.09005 * 110.66215 * 203.98519 * 24 23 22 42 42 H 1.00895 * 111.00048 * 335.83198 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8262 -0.4206 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2959 -0.7461 3.3136 17 7 4.1092 0.1749 4.1114 18 6 4.6677 -0.2447 5.2640 19 8 4.4965 -1.3847 5.6409 20 6 5.4991 0.7045 6.0879 21 1 6.1355 1.3025 5.4354 22 6 4.5812 1.6254 6.9129 23 6 4.9645 1.3616 8.3872 24 6 6.3963 0.7805 8.2743 25 7 6.3281 -0.0554 7.0485 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7083 1.1608 -3.4843 30 1 0.7376 -2.1444 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4629 -2.5819 1.9864 33 1 3.9017 -1.6022 3.0167 34 1 2.4484 -1.0891 3.9070 35 1 4.2463 1.0866 3.8097 36 1 4.7623 2.6690 6.6559 37 1 3.5357 1.3688 6.7422 38 1 4.9692 2.2910 8.9568 39 1 4.2879 0.6354 8.8377 40 1 7.1276 1.5799 8.1547 41 1 6.6338 0.1707 9.1460 42 1 5.9179 -0.9556 7.2469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602593873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:59 Heat of formation + Delta-G solvation = -92.716325 kcal Electronic energy + Delta-G solvation = -22544.069953 eV Core-core repulsion = 19136.956351 eV Total energy + Delta-G solvation = -3407.113602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55372 -40.64766 -38.53270 -37.29461 -35.60281 -34.83051 -31.86955 -30.92371 -30.71984 -28.31358 -27.55655 -27.29091 -23.84461 -22.74967 -22.25979 -21.24201 -20.20137 -18.99282 -18.47070 -17.92842 -17.10658 -17.05818 -16.99401 -16.46335 -16.36373 -15.48180 -15.43484 -14.85302 -14.72229 -14.59722 -14.12902 -14.11049 -13.89896 -13.55135 -13.53541 -13.07875 -12.86341 -12.74777 -12.71579 -12.66347 -12.47212 -12.20482 -12.13762 -12.09554 -11.78263 -11.22421 -10.99681 -10.82547 -10.51393 -10.32017 -9.73244 -9.41470 -8.15984 -6.32339 1.41654 1.42809 1.43947 1.51101 1.62291 1.78841 2.35495 2.50583 3.12601 3.21544 3.46054 3.57205 3.77354 3.89130 4.11902 4.22080 4.27907 4.42825 4.45638 4.50566 4.72138 4.74155 4.74930 4.88291 4.89108 4.97153 5.01025 5.01788 5.04042 5.14697 5.22357 5.46116 5.53257 5.64730 5.66309 5.99669 6.14350 6.24451 6.38755 6.69383 6.74581 7.01698 7.19447 7.40721 8.88269 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.003133 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.522606 B = 8934.296901 C = 9001.470516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.263 3.737 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.074 3.926 14 C 0.493 3.507 15 O -0.591 6.591 16 C 0.114 3.886 17 N -0.710 5.710 18 C 0.516 3.484 19 O -0.571 6.571 20 C 0.058 3.942 21 H 0.119 0.881 22 C -0.140 4.140 23 C -0.152 4.152 24 C 0.041 3.959 25 N -0.672 5.672 26 H 0.046 0.954 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.265 0.735 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -1.729 19.097 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.032 0.968 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.323 5.323 13 C -0.068 4.068 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.014 4.014 17 N -0.364 5.364 18 C 0.303 3.697 19 O -0.451 6.451 20 C -0.056 4.056 21 H 0.136 0.864 22 C -0.180 4.180 23 C -0.191 4.191 24 C -0.088 4.088 25 N -0.303 5.303 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.253 0.747 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.390 -1.704 18.799 19.929 hybrid contribution -0.859 0.089 -1.096 1.395 sum 5.531 -1.614 17.704 18.618 Atomic orbital electron populations 1.21882 0.97026 1.00199 1.00056 1.18578 0.91676 0.92364 0.81306 0.96780 1.21557 1.32093 1.13233 0.91135 0.91971 1.25699 0.95021 0.95605 1.01945 1.70004 1.37132 1.23821 1.24546 0.85535 0.78428 0.78983 0.78229 1.18803 1.20971 1.20262 1.48187 1.48412 1.13483 1.22219 1.21938 1.01512 0.80328 1.03050 1.20917 0.78904 0.86911 0.85197 1.90618 1.60047 1.18933 1.77750 1.21075 0.97282 0.92866 0.90145 1.45765 1.51339 1.16695 1.22560 1.21133 0.79336 0.88574 0.80677 1.90651 1.62320 1.20934 1.71174 1.22493 0.93816 0.93695 0.95580 0.86367 1.22794 0.98928 1.00766 0.95488 1.23104 0.97697 1.02787 0.95462 1.23275 0.96354 0.97436 0.91694 1.62902 1.49838 1.06417 1.11145 0.93463 0.95974 0.91338 0.92590 0.91149 0.90810 0.89342 0.87590 0.87139 0.74690 0.88285 0.91951 0.88481 0.91794 0.88956 0.89153 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.97 71.98 0.65 -5.59 16 2 C 0.26 13.22 2.64 44.24 0.12 13.34 16 3 H 0.01 0.85 6.90 -2.39 -0.02 0.84 16 4 C -0.54 -28.74 7.99 25.60 0.20 -28.54 16 5 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.96 42.35 29.54 68.60 2.03 44.37 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.59 -23.90 2.75 -826.79 -2.28 -26.17 16 13 C 0.07 2.22 9.24 127.77 1.18 3.40 16 14 C 0.49 19.01 7.74 87.66 0.68 19.68 16 15 O -0.59 -27.29 14.99 -3.05 -0.05 -27.34 16 16 C 0.11 3.26 4.71 85.63 0.40 3.66 16 17 N -0.71 -19.15 5.53 -466.79 -2.58 -21.73 16 18 C 0.52 13.39 6.87 87.66 0.60 13.99 16 19 O -0.57 -17.81 15.59 -3.04 -0.05 -17.85 16 20 C 0.06 1.15 3.81 44.31 0.17 1.32 16 21 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 22 C -0.14 -2.23 6.56 31.47 0.21 -2.03 16 23 C -0.15 -1.96 7.06 31.80 0.22 -1.73 16 24 C 0.04 0.56 7.55 86.65 0.65 1.22 16 25 N -0.67 -13.45 7.39 -484.02 -3.57 -17.02 16 26 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.41 7.02 -2.39 -0.02 2.39 16 32 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 33 H 0.11 2.86 7.40 -2.39 -0.02 2.84 16 34 H 0.11 2.81 8.11 -2.39 -0.02 2.79 16 35 H 0.41 11.20 7.44 -92.71 -0.69 10.52 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.14 7.68 -2.39 -0.02 1.12 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.35 7.83 7.31 -89.70 -0.66 7.18 16 Total: -1.00 -67.70 339.67 -1.03 -68.73 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.31 Total: 28.57 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 5.53 Total: 20.09 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -8.19 Total: -116.57 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.09 Total: -45.19 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -67.70 -1.03 -68.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.988 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds