Wall clock time and date at job start Tue Mar 31 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 C 1.50698 * 109.46929 * 240.00090 * 2 1 3 5 5 H 1.08002 * 119.99806 * 239.99570 * 4 2 1 6 6 C 1.37872 * 120.00683 * 59.99918 * 4 2 1 7 7 N 1.31523 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00462 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47213 * 89.99713 * 8 6 4 10 10 H 1.48506 * 109.47359 * 209.99973 * 8 6 4 11 11 H 1.48499 * 109.47243 * 329.99990 * 8 6 4 12 12 N 1.46495 * 109.47208 * 119.99594 * 2 1 3 13 13 C 1.46504 * 119.99877 * 59.99903 * 12 2 1 14 14 C 1.34777 * 120.00229 * 239.99968 * 12 2 1 15 15 O 1.21275 * 119.99993 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99793 * 180.02562 * 14 12 2 17 17 N 1.46501 * 109.46985 * 180.02562 * 16 14 12 18 18 C 1.34777 * 120.00339 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99532 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00111 * 180.02562 * 18 17 16 21 21 H 1.08996 * 110.33588 * 39.19583 * 20 18 17 22 22 C 1.54906 * 110.46637 * 276.88270 * 20 18 17 23 23 C 1.55138 * 101.65573 * 204.05484 * 22 20 18 24 24 C 1.54318 * 103.01792 * 35.65159 * 23 22 20 25 25 N 1.47446 * 107.23303 * 337.71992 * 24 23 22 26 26 H 1.09001 * 109.47161 * 300.00064 * 1 2 3 27 27 H 1.08999 * 109.47020 * 59.99884 * 1 2 3 28 28 H 1.08997 * 109.47346 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99697 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.46999 * 270.00193 * 13 12 2 31 31 H 1.09001 * 109.46866 * 30.00020 * 13 12 2 32 32 H 1.09003 * 109.46933 * 149.99583 * 13 12 2 33 33 H 1.08996 * 109.47532 * 60.00138 * 16 14 12 34 34 H 1.08998 * 109.47139 * 299.99856 * 16 14 12 35 35 H 0.97009 * 119.99794 * 0.02562 * 17 16 14 36 36 H 1.09006 * 110.99331 * 322.14727 * 22 20 18 37 37 H 1.09000 * 110.99212 * 85.92191 * 22 20 18 38 38 H 1.09003 * 110.70420 * 277.27538 * 23 22 20 39 39 H 1.09002 * 110.71153 * 154.03527 * 23 22 20 40 40 H 1.08996 * 109.89415 * 218.31078 * 24 23 22 41 41 H 1.09001 * 109.88767 * 97.12302 * 24 23 22 42 42 H 1.00901 * 110.99791 * 121.27455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0858 1.1257 1.8916 16 6 3.2960 -0.7461 3.3135 17 7 4.1093 0.1750 4.1113 18 6 4.6670 -0.2443 5.2644 19 8 4.4958 -1.3843 5.6414 20 6 5.5031 0.7033 6.0853 21 1 5.0609 1.6996 6.0810 22 6 6.9533 0.7548 5.5432 23 6 7.7411 1.2138 6.7984 24 6 6.9944 0.5130 7.9529 25 7 5.6355 0.2048 7.4708 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7087 1.1612 -3.4845 30 1 0.7376 -2.1442 1.9994 31 1 1.5295 -2.5968 0.4709 32 1 2.4629 -2.5818 1.9864 33 1 3.9017 -1.6022 3.0166 34 1 2.4485 -1.0890 3.9069 35 1 4.2459 1.0869 3.8099 36 1 7.2825 -0.2310 5.2145 37 1 7.0432 1.4830 4.7371 38 1 7.6922 2.2970 6.9093 39 1 8.7764 0.8767 6.7483 40 1 6.9401 1.1762 8.8161 41 1 7.5101 -0.4087 8.2226 42 1 5.4513 -0.7861 7.5177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602593881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:04 Heat of formation + Delta-G solvation = -70.085740 kcal Electronic energy + Delta-G solvation = -22509.749093 eV Core-core repulsion = 19103.616827 eV Total energy + Delta-G solvation = -3406.132266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40397 -39.20673 -37.64111 -35.61893 -34.35383 -32.95225 -30.38147 -30.32345 -29.50427 -27.12601 -26.12714 -25.27538 -22.87191 -21.28835 -21.11514 -20.34337 -18.80200 -17.91419 -16.62997 -16.56686 -16.07587 -15.61728 -15.57275 -15.34518 -14.82482 -14.56757 -13.96984 -13.93103 -13.58779 -13.10216 -12.95933 -12.69217 -12.52697 -12.19431 -12.00896 -11.86339 -11.69972 -11.56205 -11.55250 -11.12843 -11.09390 -10.88006 -10.78390 -10.34156 -10.23648 -9.98192 -9.29793 -9.17518 -9.16111 -8.79936 -8.49785 -7.74420 -6.13978 -4.22496 2.45483 2.93733 3.13854 3.22455 3.29918 3.32734 3.85735 4.00282 4.29121 4.34075 4.47401 4.62917 4.85403 4.94861 5.03403 5.11848 5.17695 5.39021 5.43456 5.47810 5.48503 5.59214 5.68892 5.69663 5.85716 5.96857 6.24994 6.31338 6.48401 6.68491 6.75632 6.98087 7.11946 7.27273 7.42564 7.46090 7.63740 7.92340 8.07118 8.11656 8.38366 8.69248 8.87074 9.44111 10.91378 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.003205 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.996212 B = 8735.593448 C = 8997.244101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.585 5.585 13 C 0.078 3.922 14 C 0.498 3.502 15 O -0.552 6.552 16 C 0.099 3.901 17 N -0.707 5.707 18 C 0.515 3.485 19 O -0.546 6.546 20 C 0.060 3.940 21 H 0.111 0.889 22 C -0.143 4.143 23 C -0.139 4.139 24 C 0.046 3.954 25 N -0.669 5.669 26 H 0.011 0.989 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -1.766 15.628 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.066 4.066 14 C 0.283 3.717 15 O -0.432 6.432 16 C -0.028 4.028 17 N -0.361 5.361 18 C 0.300 3.700 19 O -0.424 6.424 20 C -0.053 4.053 21 H 0.128 0.872 22 C -0.182 4.182 23 C -0.177 4.177 24 C -0.083 4.083 25 N -0.303 5.303 26 H 0.030 0.970 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.293 -1.323 15.922 18.001 hybrid contribution 0.775 -0.836 -1.605 1.969 sum 9.068 -2.159 14.317 17.084 Atomic orbital electron populations 1.22090 0.97976 0.99552 1.00909 1.19000 0.91020 0.94523 0.79673 0.91787 1.21301 1.32065 1.13134 0.90240 0.92162 1.24893 0.94880 0.94948 0.99010 1.69880 1.36197 1.22515 1.23876 0.86474 0.79205 0.79299 0.82295 1.20556 1.21063 1.19913 1.48220 1.48215 1.11839 1.23265 1.21702 0.99191 0.82906 1.02800 1.20229 0.79807 0.87258 0.84358 1.90637 1.58899 1.16974 1.76690 1.21200 0.96493 0.93108 0.92014 1.45712 1.51141 1.16821 1.22468 1.20612 0.79711 0.88583 0.81097 1.90670 1.61442 1.19780 1.70470 1.22523 0.95306 0.98965 0.88472 0.87171 1.23114 0.93467 1.02877 0.98767 1.22784 0.99475 1.01345 0.94101 1.22681 0.87738 0.99882 0.98034 1.61890 1.26737 1.23732 1.17930 0.96951 0.88726 0.95039 0.92598 0.93385 0.89683 0.92536 0.88814 0.88815 0.74826 0.90721 0.89525 0.90482 0.90594 0.90350 0.92747 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.97 37.16 0.33 -3.09 16 2 C 0.26 6.36 2.64 -69.09 -0.18 6.18 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.88 7.99 -34.44 -0.28 -14.16 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.58 -11.90 2.75 -175.26 -0.48 -12.38 16 13 C 0.08 1.25 9.24 59.85 0.55 1.80 16 14 C 0.50 9.64 7.74 -10.98 -0.09 9.56 16 15 O -0.55 -12.43 14.99 5.56 0.08 -12.34 16 16 C 0.10 1.50 4.71 -5.19 -0.02 1.47 16 17 N -0.71 -9.85 5.53 -61.47 -0.34 -10.19 16 18 C 0.51 6.94 7.12 -10.99 -0.08 6.86 16 19 O -0.55 -8.79 15.60 5.55 0.09 -8.71 16 20 C 0.06 0.65 3.80 -67.34 -0.26 0.39 16 21 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 22 C -0.14 -1.28 6.49 -24.59 -0.16 -1.44 16 23 C -0.14 -1.02 6.94 -24.91 -0.17 -1.19 16 24 C 0.05 0.38 7.58 -2.83 -0.02 0.36 16 25 N -0.67 -7.24 7.30 -105.06 -0.77 -8.00 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 32 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 33 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 34 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 35 H 0.41 5.63 7.44 -40.82 -0.30 5.33 16 36 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.35 4.21 7.29 -39.29 -0.29 3.93 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -30.78 340.04 -7.64 -38.42 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.49 Total: 8.05 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.46 Total: 8.39 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.96 Total: -54.51 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.17 Total: -21.05 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.78 -7.64 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.667 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds