Wall clock time and date at job start Tue Mar 31 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 C 1.50698 * 109.46929 * 240.00090 * 2 1 3 5 5 H 1.08002 * 119.99806 * 239.99570 * 4 2 1 6 6 C 1.37872 * 120.00683 * 59.99918 * 4 2 1 7 7 N 1.31523 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00462 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47213 * 89.99713 * 8 6 4 10 10 H 1.48506 * 109.47359 * 209.99973 * 8 6 4 11 11 H 1.48499 * 109.47243 * 329.99990 * 8 6 4 12 12 N 1.46495 * 109.47208 * 119.99594 * 2 1 3 13 13 C 1.46504 * 119.99877 * 59.99903 * 12 2 1 14 14 C 1.34777 * 120.00229 * 239.99968 * 12 2 1 15 15 O 1.21275 * 119.99993 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99793 * 180.02562 * 14 12 2 17 17 N 1.46501 * 109.46985 * 180.02562 * 16 14 12 18 18 C 1.34777 * 120.00339 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99532 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00111 * 180.02562 * 18 17 16 21 21 H 1.08996 * 110.33588 * 39.19583 * 20 18 17 22 22 C 1.54906 * 110.46637 * 276.88270 * 20 18 17 23 23 C 1.55138 * 101.65573 * 204.05484 * 22 20 18 24 24 C 1.54318 * 103.01792 * 35.65159 * 23 22 20 25 25 N 1.47446 * 107.23303 * 337.71992 * 24 23 22 26 26 H 1.09001 * 109.47161 * 300.00064 * 1 2 3 27 27 H 1.08999 * 109.47020 * 59.99884 * 1 2 3 28 28 H 1.08997 * 109.47346 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99697 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.46999 * 270.00193 * 13 12 2 31 31 H 1.09001 * 109.46866 * 30.00020 * 13 12 2 32 32 H 1.09003 * 109.46933 * 149.99583 * 13 12 2 33 33 H 1.08996 * 109.47532 * 60.00138 * 16 14 12 34 34 H 1.08998 * 109.47139 * 299.99856 * 16 14 12 35 35 H 0.97009 * 119.99794 * 0.02562 * 17 16 14 36 36 H 1.09006 * 110.99331 * 322.14727 * 22 20 18 37 37 H 1.09000 * 110.99212 * 85.92191 * 22 20 18 38 38 H 1.09003 * 110.70420 * 277.27538 * 23 22 20 39 39 H 1.09002 * 110.71153 * 154.03527 * 23 22 20 40 40 H 1.08996 * 109.89415 * 218.31078 * 24 23 22 41 41 H 1.09001 * 109.88767 * 97.12302 * 24 23 22 42 42 H 1.00901 * 110.99791 * 121.27455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0858 1.1257 1.8916 16 6 3.2960 -0.7461 3.3135 17 7 4.1093 0.1750 4.1113 18 6 4.6670 -0.2443 5.2644 19 8 4.4958 -1.3843 5.6414 20 6 5.5031 0.7033 6.0853 21 1 5.0609 1.6996 6.0810 22 6 6.9533 0.7548 5.5432 23 6 7.7411 1.2138 6.7984 24 6 6.9944 0.5130 7.9529 25 7 5.6355 0.2048 7.4708 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7087 1.1612 -3.4845 30 1 0.7376 -2.1442 1.9994 31 1 1.5295 -2.5968 0.4709 32 1 2.4629 -2.5818 1.9864 33 1 3.9017 -1.6022 3.0166 34 1 2.4485 -1.0890 3.9069 35 1 4.2459 1.0869 3.8099 36 1 7.2825 -0.2310 5.2145 37 1 7.0432 1.4830 4.7371 38 1 7.6922 2.2970 6.9093 39 1 8.7764 0.8767 6.7483 40 1 6.9401 1.1762 8.8161 41 1 7.5101 -0.4087 8.2226 42 1 5.4513 -0.7861 7.5177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602593881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:04 Heat of formation + Delta-G solvation = -93.466885 kcal Electronic energy + Delta-G solvation = -22510.762975 eV Core-core repulsion = 19103.616827 eV Total energy + Delta-G solvation = -3407.146149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52178 -40.62654 -38.54388 -37.29380 -35.60176 -34.82706 -31.86067 -31.03408 -30.72508 -28.34710 -27.55728 -27.29151 -23.91870 -22.75687 -21.89748 -21.37226 -20.22876 -19.09860 -18.47768 -17.91080 -17.25013 -17.05229 -16.89523 -16.39770 -16.29497 -15.80717 -15.40048 -14.79433 -14.68262 -14.40961 -14.16938 -14.05024 -13.90486 -13.54803 -13.52310 -13.08413 -12.90231 -12.83410 -12.71550 -12.66058 -12.57879 -12.21781 -12.18833 -12.13936 -11.71409 -11.21053 -11.05233 -10.82351 -10.51599 -10.32189 -9.57129 -9.41002 -8.15921 -6.32212 1.40470 1.41726 1.43071 1.52435 1.62655 1.78687 2.35392 2.50645 3.12706 3.22289 3.45443 3.54891 3.76176 3.82670 4.15264 4.21958 4.30011 4.33146 4.45874 4.47901 4.71141 4.72820 4.75196 4.86576 4.89584 5.00532 5.02015 5.04384 5.06219 5.14119 5.24836 5.46454 5.53706 5.65004 5.74575 5.99855 6.14545 6.25980 6.38388 6.69717 6.74977 7.01315 7.19815 7.40929 8.88519 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.003205 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.996212 B = 8735.593448 C = 8997.244101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.015 0.985 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.593 5.593 13 C 0.074 3.926 14 C 0.493 3.507 15 O -0.591 6.591 16 C 0.113 3.887 17 N -0.708 5.708 18 C 0.517 3.483 19 O -0.572 6.572 20 C 0.062 3.938 21 H 0.120 0.880 22 C -0.142 4.142 23 C -0.132 4.132 24 C 0.042 3.958 25 N -0.681 5.681 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.701 -2.928 16.516 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.032 0.968 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.323 5.323 13 C -0.068 4.068 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.014 4.014 17 N -0.362 5.362 18 C 0.304 3.696 19 O -0.452 6.452 20 C -0.051 4.051 21 H 0.138 0.862 22 C -0.181 4.181 23 C -0.170 4.170 24 C -0.087 4.087 25 N -0.314 5.314 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.281 -2.506 16.837 19.388 hybrid contribution 0.472 -0.454 -1.830 1.944 sum 9.752 -2.959 15.006 18.140 Atomic orbital electron populations 1.21884 0.97080 1.00194 1.00047 1.18581 0.91649 0.92392 0.81334 0.96753 1.21577 1.32011 1.13164 0.91092 0.91949 1.25708 0.95057 0.95598 1.01971 1.70020 1.37229 1.23818 1.24466 0.85466 0.78846 0.78235 0.78526 1.19411 1.21215 1.19522 1.48185 1.48403 1.13494 1.22230 1.21940 1.01518 0.80327 1.03050 1.20914 0.78928 0.86913 0.85163 1.90615 1.60094 1.18887 1.77732 1.21082 0.97319 0.92859 0.90126 1.45756 1.51102 1.16746 1.22612 1.21075 0.79263 0.88608 0.80695 1.90654 1.62441 1.21048 1.71028 1.22598 0.95820 0.98438 0.88221 0.86194 1.23125 0.92447 1.02710 0.99817 1.22784 0.99804 1.01865 0.92536 1.22795 0.86720 1.00566 0.98584 1.61963 1.28473 1.23109 1.17816 0.96007 0.91344 0.93468 0.92614 0.91198 0.90784 0.89310 0.87472 0.87191 0.74650 0.91699 0.88671 0.89485 0.89180 0.89502 0.92074 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.18 2.64 44.25 0.12 13.29 16 3 H 0.01 0.87 6.90 -2.38 -0.02 0.85 16 4 C -0.54 -28.50 7.99 25.60 0.20 -28.30 16 5 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.96 42.15 29.54 68.60 2.03 44.18 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 N -0.59 -23.81 2.75 -826.80 -2.28 -26.09 16 13 C 0.07 2.21 9.24 127.77 1.18 3.39 16 14 C 0.49 18.91 7.74 87.66 0.68 19.59 16 15 O -0.59 -27.15 14.99 -3.02 -0.05 -27.19 16 16 C 0.11 3.23 4.71 85.63 0.40 3.63 16 17 N -0.71 -18.93 5.53 -466.79 -2.58 -21.51 16 18 C 0.52 13.31 7.12 87.66 0.62 13.93 16 19 O -0.57 -17.73 15.60 -3.04 -0.05 -17.78 16 20 C 0.06 1.24 3.80 44.64 0.17 1.41 16 21 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 22 C -0.14 -2.30 6.49 31.98 0.21 -2.09 16 23 C -0.13 -1.62 6.94 31.77 0.22 -1.40 16 24 C 0.04 0.61 7.58 86.65 0.66 1.27 16 25 N -0.68 -13.79 7.30 -486.29 -3.55 -17.34 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 28 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 29 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.40 7.02 -2.39 -0.02 2.38 16 32 H 0.09 2.07 6.44 -2.39 -0.02 2.06 16 33 H 0.11 2.81 7.40 -2.39 -0.02 2.79 16 34 H 0.11 2.83 8.11 -2.39 -0.02 2.81 16 35 H 0.42 11.07 7.44 -92.70 -0.69 10.38 16 36 H 0.06 1.19 8.05 -2.38 -0.02 1.17 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 42 H 0.35 7.94 7.29 -89.69 -0.65 7.28 16 Total: -1.00 -67.31 340.04 -0.98 -68.29 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.31 Total: 28.54 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 5.56 Total: 20.43 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -8.16 Total: -116.47 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.09 Total: -44.97 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.31 -0.98 -68.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.175 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds