Wall clock time and date at job start Tue Mar 31 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.38392 * 2 1 4 4 C 1.50254 * 109.30309 * 240.26284 * 2 1 3 5 5 O 1.21278 * 118.62581 * 42.68559 * 4 2 1 6 6 N 1.33716 * 122.74822 * 222.67338 * 4 2 1 7 7 C 1.46503 * 118.53102 * 181.68262 * 6 4 2 8 8 C 1.46010 * 122.93254 * 1.70047 * 6 4 2 9 9 H 1.08993 * 109.37661 * 221.78357 * 8 6 4 10 10 C 1.53001 * 109.37316 * 102.01349 * 8 6 4 11 11 C 1.52968 * 110.03812 * 341.84221 * 8 6 4 12 12 H 1.09009 * 109.59696 * 170.05928 * 11 8 6 13 13 C 1.53001 * 109.58039 * 290.50466 * 11 8 6 14 14 N 1.46898 * 109.39200 * 119.79040 * 2 1 3 15 15 C 1.46896 * 111.00173 * 293.72132 * 14 2 1 16 16 C 1.50695 * 109.47596 * 164.09684 * 15 14 2 17 17 O 1.21296 * 119.99521 * 354.92909 * 16 15 14 18 18 N 1.34780 * 120.00349 * 174.65413 * 16 15 14 19 19 C 1.37100 * 119.99641 * 180.27402 * 18 16 15 20 20 H 1.07996 * 120.00552 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99642 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99757 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99857 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47278 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47092 * 120.00024 * 23 21 19 26 26 H 1.48499 * 109.46893 * 239.99777 * 23 21 19 27 27 H 1.09001 * 109.46984 * 306.29127 * 1 2 3 28 28 H 1.08993 * 109.47429 * 66.29869 * 1 2 3 29 29 H 1.08998 * 109.46962 * 186.30253 * 1 2 3 30 30 H 1.08994 * 109.47672 * 0.02562 * 7 6 4 31 31 H 1.09009 * 109.47073 * 119.99878 * 7 6 4 32 32 H 1.09003 * 109.46930 * 239.99364 * 7 6 4 33 33 H 1.08999 * 109.47003 * 60.00466 * 10 8 6 34 34 H 1.08998 * 109.46970 * 180.02562 * 10 8 6 35 35 H 1.08993 * 109.47572 * 300.00471 * 10 8 6 36 36 H 1.08994 * 109.47275 * 179.25369 * 13 11 8 37 37 H 1.09006 * 109.47065 * 299.25257 * 13 11 8 38 38 H 1.09000 * 109.47119 * 59.25157 * 13 11 8 39 39 H 1.09004 * 109.47582 * 44.09628 * 15 14 2 40 40 H 1.09009 * 109.47176 * 284.09904 * 15 14 2 41 41 H 0.96996 * 119.99830 * 0.27936 * 18 16 15 42 42 H 0.96997 * 119.99714 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0283 0.0000 4 6 2.0267 -0.7034 -1.2313 5 8 1.4802 -0.4770 -2.2901 6 7 3.0462 -1.5683 -1.2086 7 6 3.4786 -2.1735 -2.4708 8 6 3.7473 -1.9369 0.0179 9 1 4.8190 -1.9775 -0.1765 10 6 3.2637 -3.3110 0.4857 11 6 3.4710 -0.9026 1.1106 12 1 3.8475 -1.2700 2.0653 13 6 4.1624 0.4153 0.7557 14 7 2.0177 -0.6884 1.2025 15 6 1.6722 0.0634 2.4163 16 6 1.8271 -0.8285 3.6210 17 8 2.1002 -2.0014 3.4760 18 7 1.6678 -0.3217 4.8597 19 6 1.8143 -1.1321 5.9558 20 1 2.0578 -2.1763 5.8268 21 6 1.6495 -0.6097 7.2329 22 7 1.3537 0.6609 7.3899 23 14 1.8499 -1.7136 8.7265 24 1 2.1820 -3.0913 8.2828 25 1 2.9449 -1.1926 9.5837 26 1 0.5826 -1.7342 9.5003 27 1 -0.3633 0.6083 0.8283 28 1 -0.3634 0.4131 -0.9409 29 1 -0.3633 -1.0214 0.1128 30 1 2.8593 -1.7975 -3.2851 31 1 4.5210 -1.9160 -2.6589 32 1 3.3778 -3.2570 -2.4076 33 1 3.4692 -4.0511 -0.2877 34 1 3.7859 -3.5875 1.4016 35 1 2.1913 -3.2732 0.6765 36 1 3.9535 1.1548 1.5287 37 1 5.2385 0.2544 0.6882 38 1 3.7881 0.7755 -0.2025 39 1 0.6399 0.4073 2.3492 40 1 2.3358 0.9228 2.5126 41 1 1.4494 0.6162 4.9756 42 1 1.2390 1.0256 8.2813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602849423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:25 Heat of formation + Delta-G solvation = -52.942599 kcal Electronic energy + Delta-G solvation = -23960.985410 eV Core-core repulsion = 20555.596526 eV Total energy + Delta-G solvation = -3405.388884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02677 -38.50013 -37.19276 -35.87388 -33.88654 -32.19250 -31.27033 -30.45839 -29.49467 -27.44808 -26.40507 -24.39515 -24.10790 -22.16308 -21.72891 -19.14557 -17.92228 -17.58163 -17.31905 -16.60241 -15.85614 -15.78363 -14.91433 -14.55555 -14.49474 -14.32632 -13.88688 -13.63863 -13.47828 -13.19989 -12.98032 -12.53172 -12.47795 -12.29709 -12.01629 -11.89500 -11.77524 -11.59148 -11.53521 -11.30372 -11.24481 -11.11875 -10.73704 -10.60884 -10.36171 -10.24444 -9.65869 -9.50827 -8.70085 -8.50987 -8.02222 -7.96238 -6.43315 -3.83945 2.64615 3.01445 3.14822 3.25775 3.32216 3.74716 3.89114 4.19557 4.48685 4.61421 4.85927 4.98143 5.09576 5.22312 5.25070 5.29964 5.34286 5.37576 5.39741 5.48893 5.62277 5.72775 5.73971 5.75451 5.86676 5.97609 5.99634 6.03552 6.07915 6.17960 6.25173 6.31605 6.47894 6.69474 7.05851 7.10973 7.45003 7.53844 8.04729 8.19147 8.60183 9.16950 9.53235 10.04649 10.74549 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.004378 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.435868 B = 6393.453545 C = 6784.383462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.064 3.936 3 H 0.074 0.926 4 C 0.531 3.469 5 O -0.557 6.557 6 N -0.598 5.598 7 C 0.073 3.927 8 C 0.154 3.846 9 H 0.081 0.919 10 C -0.151 4.151 11 C 0.068 3.932 12 H 0.118 0.882 13 C -0.189 4.189 14 N -0.493 5.493 15 C 0.037 3.963 16 C 0.445 3.555 17 O -0.572 6.572 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.391 0.609 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 0.028 -13.708 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.048 4.048 3 H 0.092 0.908 4 C 0.320 3.680 5 O -0.435 6.435 6 N -0.330 5.330 7 C -0.070 4.070 8 C 0.050 3.950 9 H 0.099 0.901 10 C -0.209 4.209 11 C -0.041 4.041 12 H 0.136 0.864 13 C -0.248 4.248 14 N -0.218 5.218 15 C -0.094 4.094 16 C 0.230 3.770 17 O -0.456 6.456 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.224 0.776 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.255 -1.021 -14.148 14.809 hybrid contribution 0.442 0.934 0.997 1.436 sum 4.697 -0.087 -13.151 13.965 Atomic orbital electron populations 1.21731 0.91431 1.03548 1.02481 1.21727 0.98055 0.96651 0.88340 0.90803 1.20015 0.78946 0.78800 0.90280 1.90654 1.56855 1.64608 1.31389 1.47428 1.33502 1.43417 1.08677 1.21709 1.00026 0.98185 0.87082 1.21117 0.95543 0.95652 0.82642 0.90084 1.22036 1.04290 0.94057 1.00538 1.22191 0.87758 0.93890 1.00255 0.86429 1.22514 1.01649 0.99008 1.01638 1.62319 1.12477 1.46895 1.00061 1.22022 1.02178 0.95166 0.90024 1.19647 0.84785 0.88859 0.83664 1.90517 1.52718 1.16774 1.85576 1.41876 1.61866 1.12229 1.04317 1.19726 1.44668 0.94813 0.83425 0.87856 1.25245 0.97304 0.96281 0.99096 1.69615 1.48456 1.12356 1.23924 0.85825 0.77798 0.80058 0.80812 1.19242 1.20829 1.20783 0.91522 0.90987 0.91291 0.89387 0.92496 0.92217 0.93685 0.91004 0.90517 0.91703 0.91576 0.92800 0.88730 0.92835 0.77579 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.84 37.16 0.33 -1.48 16 2 C 0.06 0.90 1.87 -69.08 -0.13 0.77 16 3 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 4 C 0.53 8.05 6.28 -11.67 -0.07 7.98 16 5 O -0.56 -9.66 15.18 5.56 0.08 -9.58 16 6 N -0.60 -7.91 2.73 -174.81 -0.48 -8.38 16 7 C 0.07 0.79 10.43 59.85 0.62 1.41 16 8 C 0.15 1.96 2.58 -68.21 -0.18 1.79 16 9 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 10 C -0.15 -2.08 9.29 37.16 0.35 -1.73 16 11 C 0.07 0.97 1.96 -67.57 -0.13 0.84 16 12 H 0.12 1.97 6.61 -51.92 -0.34 1.62 16 13 C -0.19 -2.28 8.31 37.16 0.31 -1.97 16 14 N -0.49 -7.65 3.64 -221.58 -0.81 -8.46 16 15 C 0.04 0.61 5.23 -4.98 -0.03 0.59 16 16 C 0.45 9.76 7.30 -10.99 -0.08 9.68 16 17 O -0.57 -14.18 14.87 5.54 0.08 -14.10 16 18 N -0.57 -13.62 5.29 -10.96 -0.06 -13.68 16 19 C -0.30 -7.95 9.68 -14.93 -0.14 -8.09 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 23 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 28 H 0.07 0.94 7.59 -51.93 -0.39 0.55 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.05 6.67 -51.93 -0.35 0.71 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.58 7.64 -51.93 -0.40 0.18 16 33 H 0.04 0.53 7.63 -51.93 -0.40 0.13 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 36 H 0.06 0.79 6.62 -51.93 -0.34 0.45 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.65 5.76 -51.93 -0.30 0.35 16 39 H 0.09 1.44 6.05 -51.93 -0.31 1.13 16 40 H 0.05 0.80 6.40 -51.92 -0.33 0.47 16 41 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -30.50 329.08 -5.98 -36.48 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.21 Total: 10.22 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 0.75 Total: 10.25 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.62 Total: -53.77 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.50 -5.98 -36.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602849423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.466 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds