Wall clock time and date at job start Tue Mar 31 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.38392 * 2 1 4 4 C 1.50254 * 109.30309 * 240.26284 * 2 1 3 5 5 O 1.21278 * 118.62581 * 42.68559 * 4 2 1 6 6 N 1.33716 * 122.74822 * 222.67338 * 4 2 1 7 7 C 1.46503 * 118.53102 * 181.68262 * 6 4 2 8 8 C 1.46010 * 122.93254 * 1.70047 * 6 4 2 9 9 H 1.08993 * 109.37661 * 221.78357 * 8 6 4 10 10 C 1.53001 * 109.37316 * 102.01349 * 8 6 4 11 11 C 1.52968 * 110.03812 * 341.84221 * 8 6 4 12 12 H 1.09009 * 109.59696 * 170.05928 * 11 8 6 13 13 C 1.53001 * 109.58039 * 290.50466 * 11 8 6 14 14 N 1.46898 * 109.39200 * 119.79040 * 2 1 3 15 15 C 1.46896 * 111.00173 * 293.72132 * 14 2 1 16 16 C 1.50695 * 109.47596 * 164.09684 * 15 14 2 17 17 O 1.21296 * 119.99521 * 354.92909 * 16 15 14 18 18 N 1.34780 * 120.00349 * 174.65413 * 16 15 14 19 19 C 1.37100 * 119.99641 * 180.27402 * 18 16 15 20 20 H 1.07996 * 120.00552 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99642 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99757 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99857 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47278 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47092 * 120.00024 * 23 21 19 26 26 H 1.48499 * 109.46893 * 239.99777 * 23 21 19 27 27 H 1.09001 * 109.46984 * 306.29127 * 1 2 3 28 28 H 1.08993 * 109.47429 * 66.29869 * 1 2 3 29 29 H 1.08998 * 109.46962 * 186.30253 * 1 2 3 30 30 H 1.08994 * 109.47672 * 0.02562 * 7 6 4 31 31 H 1.09009 * 109.47073 * 119.99878 * 7 6 4 32 32 H 1.09003 * 109.46930 * 239.99364 * 7 6 4 33 33 H 1.08999 * 109.47003 * 60.00466 * 10 8 6 34 34 H 1.08998 * 109.46970 * 180.02562 * 10 8 6 35 35 H 1.08993 * 109.47572 * 300.00471 * 10 8 6 36 36 H 1.08994 * 109.47275 * 179.25369 * 13 11 8 37 37 H 1.09006 * 109.47065 * 299.25257 * 13 11 8 38 38 H 1.09000 * 109.47119 * 59.25157 * 13 11 8 39 39 H 1.09004 * 109.47582 * 44.09628 * 15 14 2 40 40 H 1.09009 * 109.47176 * 284.09904 * 15 14 2 41 41 H 0.96996 * 119.99830 * 0.27936 * 18 16 15 42 42 H 0.96997 * 119.99714 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0283 0.0000 4 6 2.0267 -0.7034 -1.2313 5 8 1.4802 -0.4770 -2.2901 6 7 3.0462 -1.5683 -1.2086 7 6 3.4786 -2.1735 -2.4708 8 6 3.7473 -1.9369 0.0179 9 1 4.8190 -1.9775 -0.1765 10 6 3.2637 -3.3110 0.4857 11 6 3.4710 -0.9026 1.1106 12 1 3.8475 -1.2700 2.0653 13 6 4.1624 0.4153 0.7557 14 7 2.0177 -0.6884 1.2025 15 6 1.6722 0.0634 2.4163 16 6 1.8271 -0.8285 3.6210 17 8 2.1002 -2.0014 3.4760 18 7 1.6678 -0.3217 4.8597 19 6 1.8143 -1.1321 5.9558 20 1 2.0578 -2.1763 5.8268 21 6 1.6495 -0.6097 7.2329 22 7 1.3537 0.6609 7.3899 23 14 1.8499 -1.7136 8.7265 24 1 2.1820 -3.0913 8.2828 25 1 2.9449 -1.1926 9.5837 26 1 0.5826 -1.7342 9.5003 27 1 -0.3633 0.6083 0.8283 28 1 -0.3634 0.4131 -0.9409 29 1 -0.3633 -1.0214 0.1128 30 1 2.8593 -1.7975 -3.2851 31 1 4.5210 -1.9160 -2.6589 32 1 3.3778 -3.2570 -2.4076 33 1 3.4692 -4.0511 -0.2877 34 1 3.7859 -3.5875 1.4016 35 1 2.1913 -3.2732 0.6765 36 1 3.9535 1.1548 1.5287 37 1 5.2385 0.2544 0.6882 38 1 3.7881 0.7755 -0.2025 39 1 0.6399 0.4073 2.3492 40 1 2.3358 0.9228 2.5126 41 1 1.4494 0.6162 4.9756 42 1 1.2390 1.0256 8.2813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602849423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:24 Heat of formation + Delta-G solvation = -74.685880 kcal Electronic energy + Delta-G solvation = -23961.928269 eV Core-core repulsion = 20555.596526 eV Total energy + Delta-G solvation = -3406.331743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17256 -40.09492 -38.57176 -37.02963 -35.81161 -33.32338 -33.15709 -31.66582 -30.66414 -28.49608 -27.82627 -26.05253 -25.22528 -23.27771 -22.96075 -20.84565 -19.81523 -18.72570 -18.52782 -17.75591 -17.44444 -16.93468 -16.44062 -16.07544 -15.88091 -15.67459 -15.24227 -15.02252 -14.80988 -14.34511 -14.10285 -14.03966 -13.60660 -13.47648 -13.29962 -13.15951 -12.96825 -12.95059 -12.86865 -12.65377 -12.42922 -12.37090 -12.34226 -12.09403 -11.94711 -11.72161 -11.40099 -10.83967 -10.22325 -9.93195 -9.74258 -9.29748 -8.41461 -5.88657 1.39152 1.44672 1.49212 1.57856 1.98080 2.13452 2.29410 2.57791 3.25900 3.37743 3.40596 3.56069 3.86161 4.03423 4.09249 4.20585 4.30981 4.37373 4.39110 4.46294 4.49923 4.57184 4.64458 4.74554 4.78186 4.84632 4.85639 4.93266 4.98941 4.99755 5.15355 5.22259 5.42434 5.46808 5.51728 5.78571 5.97095 6.09892 6.35285 6.67178 7.06685 7.19941 7.64560 8.20105 8.76337 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.004378 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.435868 B = 6393.453545 C = 6784.383462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.066 3.934 3 H 0.091 0.909 4 C 0.526 3.474 5 O -0.583 6.583 6 N -0.595 5.595 7 C 0.070 3.930 8 C 0.158 3.842 9 H 0.113 0.887 10 C -0.143 4.143 11 C 0.065 3.935 12 H 0.090 0.910 13 C -0.180 4.180 14 N -0.508 5.508 15 C 0.050 3.950 16 C 0.448 3.552 17 O -0.603 6.603 18 N -0.578 5.578 19 C -0.324 4.324 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.275 1.275 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.394 0.606 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 0.512 -14.354 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.045 4.045 3 H 0.108 0.892 4 C 0.314 3.686 5 O -0.464 6.464 6 N -0.326 5.326 7 C -0.072 4.072 8 C 0.054 3.946 9 H 0.131 0.869 10 C -0.201 4.201 11 C -0.044 4.044 12 H 0.108 0.892 13 C -0.239 4.239 14 N -0.234 5.234 15 C -0.081 4.081 16 C 0.235 3.765 17 O -0.488 6.488 18 N -0.216 5.216 19 C -0.453 4.453 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.565 5.565 23 Si 0.813 3.187 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.200 1.200 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.228 0.772 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.259 -0.535 -14.807 15.722 hybrid contribution 0.153 0.717 1.128 1.345 sum 5.412 0.181 -13.679 14.711 Atomic orbital electron populations 1.21705 0.91168 1.02734 1.03231 1.21749 0.98269 0.97231 0.87269 0.89158 1.20160 0.79184 0.79178 0.90076 1.90644 1.57809 1.65760 1.32212 1.47497 1.32825 1.42711 1.09593 1.21875 1.01218 0.98711 0.85405 1.21158 0.97061 0.94278 0.82077 0.86922 1.21929 1.01749 0.95646 1.00808 1.22170 0.87151 0.95535 0.99557 0.89225 1.22425 1.02550 0.97372 1.01532 1.62240 1.13681 1.47357 1.00075 1.21859 1.03796 0.94380 0.88064 1.20566 0.82441 0.89064 0.84427 1.90499 1.53437 1.18623 1.86238 1.41929 1.62910 1.12150 1.04600 1.19657 1.46297 0.94369 0.85022 0.90184 1.25948 0.96668 0.97564 1.01089 1.69675 1.48731 1.13316 1.24729 0.84933 0.78083 0.78091 0.77632 1.19740 1.19843 1.20038 0.90155 0.90644 0.93022 0.90715 0.89803 0.90995 0.91505 0.92192 0.93953 0.91882 0.89737 0.92490 0.87080 0.90614 0.77211 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.84 71.98 0.64 -2.75 16 2 C 0.07 1.76 1.87 44.03 0.08 1.84 16 3 H 0.09 2.15 6.75 -2.38 -0.02 2.13 16 4 C 0.53 15.18 6.28 87.68 0.55 15.73 16 5 O -0.58 -19.66 15.18 -3.02 -0.05 -19.70 16 6 N -0.60 -14.55 2.73 -825.97 -2.25 -16.80 16 7 C 0.07 1.33 10.43 127.77 1.33 2.66 16 8 C 0.16 3.71 2.58 45.07 0.12 3.83 16 9 H 0.11 2.01 8.10 -2.39 -0.02 1.99 16 10 C -0.14 -3.84 9.29 71.98 0.67 -3.18 16 11 C 0.06 1.76 1.96 44.85 0.09 1.85 16 12 H 0.09 2.98 6.61 -2.38 -0.02 2.97 16 13 C -0.18 -3.88 8.31 71.98 0.60 -3.28 16 14 N -0.51 -15.31 3.64 -854.93 -3.11 -18.42 16 15 C 0.05 1.59 5.23 85.56 0.45 2.04 16 16 C 0.45 19.81 7.30 87.65 0.64 20.45 16 17 O -0.60 -30.64 14.87 -3.08 -0.05 -30.69 16 18 N -0.58 -28.18 5.29 -306.98 -1.62 -29.81 16 19 C -0.32 -17.69 9.68 84.04 0.81 -16.87 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 23 Si 0.99 42.13 29.55 68.60 2.03 44.16 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H 0.08 1.82 6.55 -2.39 -0.02 1.81 16 28 H 0.07 1.90 7.59 -2.39 -0.02 1.88 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.67 6.67 -2.39 -0.02 1.66 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 1.20 7.64 -2.39 -0.02 1.18 16 33 H 0.07 1.46 7.63 -2.39 -0.02 1.44 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.42 7.89 -2.39 -0.02 1.41 16 36 H 0.06 1.38 6.62 -2.39 -0.02 1.37 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.21 5.76 -2.39 -0.01 1.19 16 39 H 0.11 3.21 6.05 -2.38 -0.01 3.20 16 40 H 0.08 2.12 6.40 -2.38 -0.02 2.11 16 41 H 0.39 18.42 7.90 -92.71 -0.73 17.69 16 42 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -66.41 329.08 1.98 -64.43 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.30 Total: 33.29 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 6.44 Total: 22.10 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -6.70 Total: -113.58 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.41 1.98 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602849423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.252 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds