Wall clock time and date at job start Tue Mar 31 2020 02:58:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.47665 * 2 1
4 4 C 1.50702 * 109.47248 * 120.00732 * 2 1 3
5 5 H 1.07996 * 120.00286 * 116.67243 * 4 2 1
6 6 C 1.37882 * 119.99605 * 296.67683 * 4 2 1
7 7 N 1.31510 * 119.99983 * 352.39286 * 6 4 2
8 8 Si 1.86801 * 119.99794 * 172.67966 * 6 4 2
9 9 H 1.48501 * 109.46865 * 264.79000 * 8 6 4
10 10 H 1.48494 * 109.47181 * 24.78760 * 8 6 4
11 11 H 1.48494 * 109.47146 * 144.79188 * 8 6 4
12 12 N 1.46900 * 109.47007 * 240.00279 * 2 1 3
13 13 C 1.46903 * 111.00093 * 84.99710 * 12 2 1
14 14 C 1.50698 * 109.47209 * 180.02562 * 13 12 2
15 15 O 1.21230 * 120.00183 * 0.02562 * 14 13 12
16 16 N 1.34773 * 119.99959 * 180.02562 * 14 13 12
17 17 C 1.34772 * 120.00139 * 180.02562 * 16 14 13
18 18 O 1.21546 * 119.99975 * 359.97438 * 17 16 14
19 19 N 1.34782 * 120.00307 * 179.97438 * 17 16 14
20 20 C 1.46500 * 120.00317 * 179.97438 * 19 17 16
21 21 C 1.54268 * 110.03213 * 272.91030 * 20 19 17
22 22 C 1.54964 * 104.15666 * 217.13408 * 21 20 19
23 23 C 1.54893 * 102.77643 * 37.88795 * 22 21 20
24 24 C 1.53872 * 110.03145 * 155.68849 * 20 19 17
25 25 H 1.09003 * 109.46886 * 297.65739 * 1 2 3
26 26 H 1.08998 * 109.47467 * 57.65312 * 1 2 3
27 27 H 1.08992 * 109.47550 * 177.66107 * 1 2 3
28 28 H 0.97007 * 119.99993 * 180.27562 * 7 6 4
29 29 H 1.00903 * 110.99877 * 321.04986 * 12 2 1
30 30 H 1.08998 * 109.47502 * 300.00549 * 13 12 2
31 31 H 1.09003 * 109.46498 * 60.00243 * 13 12 2
32 32 H 0.97008 * 119.99924 * 359.97438 * 16 14 13
33 33 H 0.97000 * 119.99886 * 0.02562 * 19 17 16
34 34 H 1.09004 * 110.01478 * 34.29881 * 20 19 17
35 35 H 1.09003 * 110.48785 * 335.78291 * 21 20 19
36 36 H 1.09000 * 110.48458 * 98.42730 * 21 20 19
37 37 H 1.09001 * 110.72017 * 279.57248 * 22 21 20
38 38 H 1.09004 * 110.92050 * 156.29407 * 22 21 20
39 39 H 1.09006 * 110.48381 * 203.40084 * 23 22 21
40 40 H 1.09001 * 110.59849 * 80.82228 * 23 22 21
41 41 H 1.08997 * 110.03545 * 238.56997 * 24 20 19
42 42 H 1.08995 * 110.03391 * 0.02562 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7106 1.2304
5 1 2.6082 -1.6189 1.1321
6 6 1.7567 -0.2010 2.4816
7 7 1.1874 0.9786 2.6003
8 14 2.1991 -1.1826 4.0081
9 1 1.0157 -1.9589 4.4575
10 1 3.3114 -2.1143 3.6923
11 1 2.6218 -0.2549 5.0878
12 7 2.0196 -0.6924 -1.1995
13 6 2.0823 0.2227 -2.3469
14 6 2.5872 -0.5217 -3.5561
15 8 2.8666 -1.6982 -3.4707
16 7 2.7280 0.1207 -4.7325
17 6 3.1790 -0.5451 -5.8141
18 8 3.4592 -1.7247 -5.7284
19 7 3.3194 0.0971 -6.9907
20 6 3.8101 -0.6265 -8.1662
21 6 5.3523 -0.5998 -8.1974
22 6 5.6986 -0.4627 -9.7016
23 6 4.5990 0.4970 -10.2202
24 6 3.3312 0.0702 -9.4519
25 1 -0.3633 0.4770 0.9103
26 1 -0.3634 0.5498 -0.8682
27 1 -0.3634 -1.0267 -0.0419
28 1 0.9971 1.3389 3.4807
29 1 1.4494 -1.4978 -1.4101
30 1 1.0870 0.6165 -2.5525
31 1 2.7588 1.0462 -2.1182
32 1 2.5041 1.0620 -4.8010
33 1 3.0962 1.0386 -7.0590
34 1 3.4549 -1.6568 -8.1453
35 1 5.7304 0.2568 -7.6393
36 1 5.7580 -1.5279 -7.7948
37 1 5.6351 -1.4291 -10.2016
38 1 6.6879 -0.0247 -9.8348
39 1 4.4561 0.3691 -11.2932
40 1 4.8538 1.5318 -9.9910
41 1 2.7443 -0.6221 -10.0554
42 1 2.7341 0.9469 -9.2012
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602871171.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:14
Heat of formation + Delta-G solvation = -97.372125 kcal
Electronic energy + Delta-G solvation = -21954.391820 eV
Core-core repulsion = 18547.076327 eV
Total energy + Delta-G solvation = -3407.315493 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-42.22964 -40.10364 -38.57496 -37.44198 -35.75926 -34.49198 -34.42095 -31.13151
-29.64638 -28.77744 -27.29918 -26.94066 -23.49539 -22.11231 -21.70336 -21.53330
-21.20718 -19.99455 -18.62449 -17.93404 -17.27433 -17.09839 -16.59965 -16.51215
-16.08665 -15.75499 -15.55218 -15.11251 -14.78958 -14.43907 -14.37585 -14.25437
-13.61609 -13.30114 -13.09095 -12.83339 -12.77498 -12.52026 -12.41456 -12.20277
-12.11977 -12.00787 -11.94746 -11.90334 -11.75086 -11.45208 -11.24319 -11.14164
-10.69672 -10.44819 -10.13314 -9.02432 -8.12312 -6.18447 1.03533 1.29440
1.42295 1.44096 1.55303 2.22042 2.45154 2.89438 3.18051 3.59475
3.66359 3.70788 3.75588 4.00202 4.41403 4.43733 4.44419 4.50996
4.54473 4.62831 4.75587 4.78617 4.89120 4.89544 4.99269 5.04621
5.07006 5.15988 5.24610 5.28978 5.34415 5.46556 5.51042 5.61158
5.69270 5.77306 6.22320 6.54606 6.62229 6.74602 6.92975 7.13671
7.36220 7.49642 8.95117
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.046905 B = 0.002573 C = 0.002520
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 596.808832 B =10877.950052 C =11110.625625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.218 3.782
3 H 0.024 0.976
4 C -0.520 4.520
5 H 0.045 0.955
6 C 0.016 3.984
7 N -0.917 5.917
8 Si 0.953 3.047
9 H -0.276 1.276
10 H -0.277 1.277
11 H -0.281 1.281
12 N -0.688 5.688
13 C 0.051 3.949
14 C 0.520 3.480
15 O -0.511 6.511
16 N -0.672 5.672
17 C 0.688 3.312
18 O -0.591 6.591
19 N -0.710 5.710
20 C 0.150 3.850
21 C -0.139 4.139
22 C -0.122 4.122
23 C -0.118 4.118
24 C -0.122 4.122
25 H 0.052 0.948
26 H 0.042 0.958
27 H 0.031 0.969
28 H 0.262 0.738
29 H 0.333 0.667
30 H 0.087 0.913
31 H 0.118 0.882
32 H 0.434 0.566
33 H 0.418 0.582
34 H 0.064 0.936
35 H 0.071 0.929
36 H 0.044 0.956
37 H 0.068 0.932
38 H 0.076 0.924
39 H 0.081 0.919
40 H 0.078 0.922
41 H 0.081 0.919
42 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.653 7.196 -27.098 28.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.110 3.890
3 H 0.042 0.958
4 C -0.558 4.558
5 H 0.064 0.936
6 C -0.183 4.183
7 N -0.557 5.557
8 Si 0.779 3.221
9 H -0.201 1.201
10 H -0.202 1.202
11 H -0.206 1.206
12 N -0.319 5.319
13 C -0.082 4.082
14 C 0.308 3.692
15 O -0.381 6.381
16 N -0.341 5.341
17 C 0.389 3.611
18 O -0.467 6.467
19 N -0.368 5.368
20 C 0.045 3.955
21 C -0.178 4.178
22 C -0.160 4.160
23 C -0.155 4.155
24 C -0.160 4.160
25 H 0.071 0.929
26 H 0.061 0.939
27 H 0.050 0.950
28 H 0.072 0.928
29 H 0.151 0.849
30 H 0.105 0.895
31 H 0.136 0.864
32 H 0.273 0.727
33 H 0.257 0.743
34 H 0.082 0.918
35 H 0.090 0.910
36 H 0.063 0.937
37 H 0.087 0.913
38 H 0.095 0.905
39 H 0.100 0.900
40 H 0.097 0.903
41 H 0.099 0.901
42 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 3.674 5.623 -26.661 27.494
hybrid contribution -0.894 0.268 0.995 1.364
sum 2.779 5.892 -25.666 26.479
Atomic orbital electron populations
1.22227 0.99549 0.99181 1.00497 1.19000 0.90171 0.93479 0.86333
0.95771 1.21414 1.33254 1.09748 0.91411 0.93629 1.25582 0.95525
0.95731 1.01447 1.70016 1.44424 1.17068 1.24216 0.85625 0.78365
0.78680 0.79428 1.20149 1.20183 1.20620 1.60394 1.59303 1.09194
1.03047 1.21910 1.02446 0.96066 0.87773 1.21418 0.76374 0.87347
0.84105 1.90799 1.45305 1.17936 1.84050 1.43921 1.64478 1.16736
1.08951 1.16485 0.78229 0.84931 0.81486 1.91040 1.54928 1.16323
1.84372 1.45323 1.69758 1.14492 1.07240 1.21684 0.93796 0.96143
0.83891 1.22812 0.95091 1.01453 0.98411 1.22490 0.99722 1.00341
0.93405 1.22356 0.93354 0.99586 1.00249 1.22413 0.98838 1.01233
0.93545 0.92895 0.93946 0.95011 0.92850 0.84895 0.89500 0.86398
0.72664 0.74344 0.91774 0.91018 0.93694 0.91324 0.90501 0.90045
0.90347 0.90077 0.89026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.99 9.01 71.98 0.65 -6.34 16
2 C 0.22 10.70 2.46 44.17 0.11 10.81 16
3 H 0.02 1.27 7.79 -2.39 -0.02 1.25 16
4 C -0.52 -29.36 8.79 25.60 0.23 -29.13 16
5 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16
6 C 0.02 0.89 5.21 84.66 0.44 1.33 16
7 N -0.92 -51.97 11.92 21.45 0.26 -51.71 16
8 Si 0.95 44.72 29.54 68.60 2.03 46.74 16
9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16
12 N -0.69 -29.88 5.86 -499.46 -2.93 -32.81 16
13 C 0.05 1.59 5.96 85.56 0.51 2.10 16
14 C 0.52 17.21 7.81 87.66 0.68 17.90 16
15 O -0.51 -23.26 14.60 19.89 0.29 -22.97 16
16 N -0.67 -15.23 5.24 -440.53 -2.31 -17.54 16
17 C 0.69 18.61 8.50 179.05 1.52 20.13 16
18 O -0.59 -23.71 14.41 18.90 0.27 -23.44 16
19 N -0.71 -11.37 5.05 -454.39 -2.29 -13.66 16
20 C 0.15 2.44 3.23 45.72 0.15 2.59 16
21 C -0.14 -2.31 6.54 31.70 0.21 -2.11 16
22 C -0.12 -1.32 6.91 31.91 0.22 -1.09 16
23 C -0.12 -0.82 6.83 31.67 0.22 -0.61 16
24 C -0.12 -1.04 6.57 31.32 0.21 -0.83 16
25 H 0.05 2.66 6.59 -2.39 -0.02 2.64 16
26 H 0.04 1.58 7.51 -2.39 -0.02 1.56 16
27 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16
28 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16
29 H 0.33 14.73 8.15 -89.69 -0.73 13.99 16
30 H 0.09 2.21 7.48 -2.39 -0.02 2.20 16
31 H 0.12 3.33 8.06 -2.39 -0.02 3.31 16
32 H 0.43 4.77 8.71 -92.70 -0.81 3.97 16
33 H 0.42 3.03 8.32 -92.71 -0.77 2.26 16
34 H 0.06 1.45 7.59 -2.39 -0.02 1.43 16
35 H 0.07 1.17 8.05 -2.39 -0.02 1.15 16
36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
38 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16
39 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16
40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16
41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
42 H 0.09 0.45 7.61 -2.39 -0.02 0.43 16
Total: -1.00 -80.68 344.68 -0.81 -81.49
By element:
Atomic # 1 Polarization: 20.40 SS G_CDS: -1.26 Total: 19.14 kcal
Atomic # 6 Polarization: 9.61 SS G_CDS: 5.14 Total: 14.75 kcal
Atomic # 7 Polarization: -108.44 SS G_CDS: -7.27 Total: -115.71 kcal
Atomic # 8 Polarization: -46.97 SS G_CDS: 0.56 Total: -46.41 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal
Total: -80.68 -0.81 -81.49 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602871171.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.881 kcal
(2) G-P(sol) polarization free energy of solvation -80.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds