Wall clock time and date at job start Tue Mar 31 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47727 * 2 1 4 4 C 1.53003 * 109.46815 * 120.00015 * 2 1 3 5 5 O 1.42902 * 109.47036 * 174.99362 * 4 2 1 6 6 C 1.42898 * 114.00018 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47203 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47096 * 55.00200 * 7 6 5 9 9 O 1.42906 * 109.46716 * 295.00159 * 7 6 5 10 10 C 1.52998 * 109.47033 * 175.00470 * 7 6 5 11 11 N 1.46505 * 109.46658 * 185.00045 * 10 7 6 12 12 C 1.35310 * 125.86763 * 125.29510 * 11 10 7 13 13 C 1.35348 * 106.17503 * 180.17814 * 12 11 10 14 14 C 1.50700 * 126.75241 * 179.84708 * 13 12 11 15 15 C 1.50702 * 109.46869 * 124.71667 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 N 1.33770 * 106.49624 * 359.59617 * 13 12 11 24 24 N 1.28632 * 108.88455 * 0.25241 * 23 13 12 25 25 H 1.09004 * 109.47004 * 300.00196 * 1 2 3 26 26 H 1.09005 * 109.46881 * 59.99646 * 1 2 3 27 27 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47004 * 239.99803 * 2 1 3 29 29 H 1.08995 * 109.47480 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46712 * 300.00049 * 3 2 1 31 31 H 1.08999 * 109.46613 * 59.99751 * 3 2 1 32 32 H 1.08999 * 109.47163 * 55.00162 * 4 2 1 33 33 H 1.08994 * 109.47314 * 294.99591 * 4 2 1 34 34 H 1.09005 * 109.47079 * 60.00744 * 6 5 4 35 35 H 1.09002 * 109.47458 * 300.00280 * 6 5 4 36 36 H 0.96699 * 114.00201 * 299.99454 * 9 7 6 37 37 H 1.09001 * 109.47517 * 64.99978 * 10 7 6 38 38 H 1.08999 * 109.47139 * 304.99631 * 10 7 6 39 39 H 1.08000 * 126.91429 * 0.03609 * 12 11 10 40 40 H 1.09004 * 109.47210 * 4.71960 * 14 13 12 41 41 H 1.08994 * 109.47551 * 244.71612 * 14 13 12 42 42 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 3.4641 -0.8240 1.1920 6 6 4.0449 -1.4848 2.3181 7 6 5.5649 -1.5366 2.1509 8 1 5.9477 -0.5282 1.9937 9 8 5.8926 -2.3516 1.0237 10 6 6.1965 -2.1313 3.4111 11 7 7.6562 -2.0711 3.3007 12 6 8.4961 -1.5004 4.1949 13 6 9.7446 -1.6684 3.7001 14 6 11.0334 -1.2037 4.3278 15 6 11.9668 -2.3764 4.4852 16 1 11.6578 -3.3597 4.1626 17 6 13.2177 -2.1929 5.0354 18 7 14.0343 -3.2153 5.1678 19 14 13.7524 -0.4921 5.5928 20 1 13.3710 -0.2944 7.0143 21 1 15.2256 -0.3660 5.4535 22 1 13.0861 0.5361 4.7538 23 7 9.6099 -2.3328 2.5469 24 7 8.3604 -2.5565 2.3388 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1370 34 1 3.6518 -2.4992 2.3866 35 1 3.7982 -0.9373 3.2278 36 1 5.5821 -3.2646 1.0950 37 1 5.8829 -3.1695 3.5196 38 1 5.8744 -1.5614 4.2827 39 1 8.2247 -1.0077 5.1169 40 1 10.8257 -0.7708 5.3063 41 1 11.4984 -0.4525 3.6894 42 1 14.9141 -3.0862 5.5552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603257060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:29 Heat of formation + Delta-G solvation = -41.009036 kcal Electronic energy + Delta-G solvation = -21678.906589 eV Core-core repulsion = 18274.035183 eV Total energy + Delta-G solvation = -3404.871406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.01864 -39.78713 -38.25130 -35.91447 -35.69662 -34.86441 -33.12986 -31.56253 -29.83584 -28.03845 -27.90123 -26.22718 -25.09249 -23.40064 -22.60142 -21.60397 -21.11289 -18.92196 -18.65674 -17.82303 -17.49718 -16.96830 -16.86248 -16.31752 -16.24436 -15.65695 -15.51774 -15.07111 -14.92933 -14.63402 -14.16274 -13.96903 -13.91220 -13.41237 -13.30914 -13.05114 -12.87553 -12.79115 -12.43923 -12.31178 -12.15583 -12.00057 -11.88083 -11.78975 -11.61122 -11.50750 -11.40913 -11.24674 -10.74102 -10.66475 -10.55903 -9.82748 -8.23578 -6.28699 0.80302 1.40851 1.45925 1.53758 1.57646 1.79958 2.41751 2.56697 3.10356 3.36189 3.57103 3.68443 3.84285 3.88859 3.92830 4.02487 4.09744 4.25303 4.28876 4.32388 4.43774 4.46489 4.54411 4.62876 4.74000 4.75659 4.79547 4.88437 4.98969 5.04326 5.07860 5.23049 5.35477 5.38764 5.39325 5.41375 5.63924 5.86609 6.26700 6.33574 6.76461 6.81381 7.32801 7.77615 8.94285 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042570 B = 0.002528 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.585239 B =11075.272943 C =11356.435527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.144 4.144 4 C 0.063 3.937 5 O -0.404 6.404 6 C 0.040 3.960 7 C 0.104 3.896 8 H 0.086 0.914 9 O -0.562 6.562 10 C 0.080 3.920 11 N -0.286 5.286 12 C -0.053 4.053 13 C -0.012 4.012 14 C 0.066 3.934 15 C -0.517 4.517 16 H 0.017 0.983 17 C -0.001 4.001 18 N -0.955 5.955 19 Si 0.961 3.039 20 H -0.253 1.253 21 H -0.288 1.288 22 H -0.244 1.244 23 N -0.321 5.321 24 N -0.099 5.099 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.386 0.614 37 H 0.124 0.876 38 H 0.159 0.841 39 H 0.235 0.765 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.933 9.081 -1.729 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.013 4.013 5 O -0.324 6.324 6 C -0.038 4.038 7 C 0.043 3.957 8 H 0.104 0.896 9 O -0.368 6.368 10 C -0.040 4.040 11 N -0.081 5.081 12 C -0.203 4.203 13 C -0.150 4.150 14 C 0.027 3.973 15 C -0.556 4.556 16 H 0.035 0.965 17 C -0.196 4.196 18 N -0.596 5.596 19 Si 0.783 3.217 20 H -0.178 1.178 21 H -0.214 1.214 22 H -0.167 1.167 23 N -0.188 5.188 24 N -0.078 5.078 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.235 0.765 37 H 0.142 0.858 38 H 0.177 0.823 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -32.481 8.877 -3.389 33.842 hybrid contribution 0.523 -0.042 1.323 1.423 sum -31.958 8.836 -2.066 33.221 Atomic orbital electron populations 1.21754 0.92736 1.02569 1.02819 1.21136 0.96677 0.96486 0.97494 1.21770 1.00638 0.95627 1.02056 1.22731 0.79985 0.99986 0.98574 1.87935 1.21300 1.79216 1.43925 1.23119 0.91600 0.98877 0.90164 1.22074 0.93392 0.95309 0.84920 0.89567 1.86759 1.81884 1.26284 1.41909 1.23134 0.71836 1.06854 1.02130 1.47467 1.09802 1.36419 1.14417 1.23875 0.88784 1.07076 1.00531 1.22440 0.97311 1.01511 0.93782 1.17969 0.87943 0.95407 0.95943 1.21137 0.99900 0.94414 1.40115 0.96498 1.26115 0.96015 1.02110 0.95406 1.70094 1.09130 1.33560 1.46834 0.85515 0.77292 0.78923 0.80006 1.17769 1.21364 1.16708 1.75051 1.08887 1.16551 1.18294 1.78243 0.97567 1.19256 1.12707 0.91680 0.91734 0.91893 0.91830 0.93923 0.92327 0.92076 0.92282 0.92037 0.90342 0.89408 0.76544 0.85803 0.82319 0.74858 0.92023 0.95098 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 2 C -0.10 -1.22 3.16 -10.79 -0.03 -1.26 16 3 C -0.14 -1.93 9.09 71.98 0.65 -1.28 16 4 C 0.06 0.73 5.32 71.98 0.38 1.12 16 5 O -0.40 -6.92 9.84 -144.34 -1.42 -8.34 16 6 C 0.04 0.42 5.57 71.98 0.40 0.83 16 7 C 0.10 1.79 3.44 30.60 0.11 1.90 16 8 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 9 O -0.56 -13.65 12.33 -144.34 -1.78 -15.43 16 10 C 0.08 1.19 6.14 86.38 0.53 1.72 16 11 N -0.29 -8.52 3.44 -347.73 -1.20 -9.71 16 12 C -0.05 -1.69 11.49 83.49 0.96 -0.73 16 13 C -0.01 -0.56 6.44 41.60 0.27 -0.29 16 14 C 0.07 3.25 4.62 29.10 0.13 3.39 16 15 C -0.52 -31.72 9.64 25.60 0.25 -31.48 16 16 H 0.02 1.18 7.98 -2.91 -0.02 1.16 16 17 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 18 N -0.96 -62.29 13.96 21.45 0.30 -61.99 16 19 Si 0.96 44.20 27.47 68.60 1.88 46.09 16 20 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 23 N -0.32 -16.19 12.40 -48.60 -0.60 -16.79 16 24 N -0.10 -4.09 12.09 37.02 0.45 -3.64 16 25 H 0.06 0.41 8.14 -2.38 -0.02 0.40 16 26 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.75 7.82 -2.39 -0.02 0.73 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.39 6.39 9.05 -74.06 -0.67 5.72 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.16 0.87 8.07 -2.39 -0.02 0.85 16 39 H 0.24 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.06 2.60 7.56 -2.38 -0.02 2.58 16 41 H 0.03 1.53 7.19 -2.39 -0.02 1.51 16 42 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -89.48 353.60 2.68 -86.80 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.27 Total: 9.13 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.77 Total: -26.12 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.05 Total: -92.14 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -3.20 Total: -23.77 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -89.48 2.68 -86.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603257060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.794 kcal (2) G-P(sol) polarization free energy of solvation -89.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds