Wall clock time and date at job start Tue Mar 31 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46795 * 2 1 4 4 O 1.21275 * 120.00284 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99717 * 179.97438 * 3 2 1 6 6 C 1.46512 * 119.99855 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47217 * 34.99756 * 6 5 3 8 8 C 1.53002 * 109.46806 * 274.99911 * 6 5 3 9 9 C 1.50700 * 109.47203 * 155.00117 * 6 5 3 10 10 O 1.21286 * 119.99660 * 15.39332 * 9 6 5 11 11 N 1.34768 * 119.99985 * 195.39667 * 9 6 5 12 12 C 1.46967 * 120.59764 * 174.71983 * 11 9 6 13 13 C 1.53369 * 108.63804 * 235.20878 * 12 11 9 14 14 N 1.46971 * 108.63055 * 310.57336 * 13 12 11 15 15 C 1.36938 * 120.58856 * 235.20375 * 14 13 12 16 16 H 1.07991 * 120.00298 * 26.49361 * 15 14 13 17 17 C 1.38818 * 119.99481 * 206.21559 * 15 14 13 18 18 N 1.31615 * 119.99705 * 217.35350 * 17 15 14 19 19 Si 1.86793 * 119.99950 * 37.35575 * 17 15 14 20 20 H 1.48496 * 109.47356 * 95.32776 * 19 17 15 21 21 H 1.48507 * 109.47081 * 215.32638 * 19 17 15 22 22 H 1.48503 * 109.47327 * 335.32454 * 19 17 15 23 23 C 1.46961 * 118.81328 * 55.48153 * 14 13 12 24 24 C 1.46967 * 120.59509 * 354.69905 * 11 9 6 25 25 H 1.09001 * 109.46611 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46992 * 299.99583 * 1 2 3 27 27 H 1.09002 * 109.46865 * 59.99808 * 1 2 3 28 28 H 1.08998 * 109.47452 * 240.00281 * 2 1 3 29 29 H 1.08997 * 109.47329 * 120.00277 * 2 1 3 30 30 H 0.96996 * 120.00788 * 359.97438 * 5 3 2 31 31 H 1.09002 * 109.47207 * 303.17841 * 8 6 5 32 32 H 1.09000 * 109.46788 * 63.17757 * 8 6 5 33 33 H 1.08994 * 109.46862 * 183.17949 * 8 6 5 34 34 H 1.09002 * 109.61070 * 115.45735 * 12 11 9 35 35 H 1.09001 * 109.60281 * 354.94997 * 12 11 9 36 36 H 1.09000 * 109.61199 * 190.82879 * 13 12 11 37 37 H 1.08998 * 109.60937 * 70.31401 * 13 12 11 38 38 H 0.97003 * 119.99917 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.61310 * 64.26618 * 23 14 13 40 40 H 1.09001 * 109.60686 * 184.77747 * 23 14 13 41 41 H 1.08999 * 109.61148 * 244.54145 * 24 11 9 42 42 H 1.09004 * 109.60713 * 5.05364 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0485 0.0011 7 1 3.1729 3.6715 0.5904 8 6 3.8976 3.5716 -1.4358 9 6 5.2270 3.0928 0.6020 10 8 5.8641 2.0691 0.7335 11 7 5.7542 4.2697 0.9933 12 6 7.0499 4.3158 1.6854 13 6 6.8690 5.0575 3.0156 14 7 6.1586 6.3180 2.7574 15 6 6.6944 7.5139 3.1551 16 1 7.7642 7.6183 3.2592 17 6 5.8626 8.5935 3.4187 18 7 6.2389 9.8104 3.0874 19 14 4.2094 8.3192 4.2438 20 1 4.3456 8.5296 5.7075 21 1 3.2174 9.2789 3.6960 22 1 3.7507 6.9309 3.9839 23 6 4.8603 6.2715 2.0704 24 6 5.0439 5.5302 0.7352 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9878 0.9300 0.0013 31 1 4.5258 2.9158 -2.0387 32 1 2.8902 3.5926 -1.8514 33 1 4.3139 4.5789 -1.4409 34 1 7.7760 4.8441 1.0676 35 1 7.3984 3.3009 1.8770 36 1 7.8451 5.2703 3.4515 37 1 6.2856 4.4426 3.7009 38 1 5.6578 10.5649 3.2720 39 1 4.1373 5.7412 2.6900 40 1 4.5097 7.2863 1.8819 41 1 5.6272 6.1451 0.0498 42 1 4.0678 5.3174 0.2994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610397006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:21 Heat of formation + Delta-G solvation = -39.631152 kcal Electronic energy + Delta-G solvation = -23314.052168 eV Core-core repulsion = 19909.240512 eV Total energy + Delta-G solvation = -3404.811656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56342 -39.36112 -37.20033 -35.13525 -34.10339 -33.08149 -31.84087 -31.01863 -30.14216 -27.32735 -25.38209 -24.22932 -23.28878 -22.87564 -20.77835 -20.33415 -19.01633 -17.85855 -16.75519 -16.71240 -15.97632 -15.81062 -15.46459 -14.93760 -14.75467 -14.34971 -14.14832 -13.83470 -13.70896 -13.52348 -13.06882 -12.76369 -12.67479 -12.33434 -12.30508 -12.21532 -11.97315 -11.88231 -11.72645 -11.38827 -11.09648 -10.86720 -10.51092 -10.43836 -10.23791 -10.01043 -9.66758 -9.53208 -9.24077 -8.82072 -8.31245 -7.09223 -6.14760 -3.33913 2.45821 2.63446 2.82263 3.31903 3.36628 3.46097 3.51465 4.39458 4.47905 4.56233 4.77628 4.84242 4.84454 4.98329 5.03522 5.17419 5.29547 5.45662 5.46371 5.54670 5.55018 5.63707 5.69937 5.74303 5.82991 5.93534 5.97744 5.98993 6.04564 6.13950 6.26137 6.44652 6.52099 6.68359 6.79175 7.36981 7.57832 7.81737 8.08207 8.18840 8.20646 8.82277 9.61350 10.00601 10.99406 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.004542 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.069697 B = 6162.890972 C = 6839.349975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.541 6.541 5 N -0.715 5.715 6 C 0.123 3.877 7 H 0.112 0.888 8 C -0.160 4.160 9 C 0.510 3.490 10 O -0.555 6.555 11 N -0.590 5.590 12 C 0.096 3.904 13 C 0.132 3.868 14 N -0.599 5.599 15 C -0.278 4.278 16 H 0.083 0.917 17 C 0.041 3.959 18 N -0.877 5.877 19 Si 0.833 3.167 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.258 1.258 23 C 0.130 3.870 24 C 0.078 3.922 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.409 0.591 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -17.110 -8.370 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.417 6.417 5 N -0.369 5.369 6 C 0.015 3.985 7 H 0.130 0.870 8 C -0.219 4.219 9 C 0.297 3.703 10 O -0.434 6.434 11 N -0.322 5.322 12 C -0.027 4.027 13 C 0.005 3.995 14 N -0.322 5.322 15 C -0.405 4.405 16 H 0.101 0.899 17 C -0.161 4.161 18 N -0.516 5.516 19 Si 0.660 3.340 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.183 1.183 23 C 0.004 3.996 24 C -0.046 4.046 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.246 0.754 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.567 -16.746 -8.286 19.805 hybrid contribution -0.600 -0.155 0.667 0.910 sum -7.167 -16.901 -7.619 19.876 Atomic orbital electron populations 1.21532 0.92925 1.01536 1.03449 1.21620 0.98644 0.93517 1.04502 1.20825 0.81720 0.92081 0.75452 1.90711 1.55229 1.46486 1.49324 1.45861 1.07501 1.08051 1.75464 1.20772 0.93936 0.85206 0.98627 0.87035 1.22179 1.03530 1.02038 0.94152 1.20456 0.87811 0.83649 0.78392 1.90629 1.62275 1.33308 1.57195 1.47964 1.21849 1.06043 1.56320 1.22269 0.83661 1.01539 0.95277 1.21355 0.97603 0.87563 0.92935 1.44307 1.20326 1.02544 1.65058 1.18763 0.92723 0.85631 1.43388 0.89901 1.25193 0.97169 0.94669 0.99056 1.70117 1.38714 0.99437 1.43347 0.87634 0.85848 0.78845 0.81673 1.21905 1.21905 1.18250 1.21806 0.88508 0.99145 0.90181 1.22788 0.96376 0.84723 1.00701 0.92099 0.91908 0.91961 0.88848 0.88790 0.75374 0.91771 0.90840 0.90418 0.91209 0.89664 0.90537 0.95645 0.92638 0.94846 0.90220 0.90312 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.14 -1.14 6.42 -27.88 -0.18 -1.32 16 3 C 0.51 6.14 7.79 -10.98 -0.09 6.06 16 4 O -0.54 -8.44 15.64 5.56 0.09 -8.35 16 5 N -0.71 -8.46 5.03 -54.92 -0.28 -8.74 16 6 C 0.12 1.64 2.12 -69.07 -0.15 1.49 16 7 H 0.11 1.62 6.55 -51.93 -0.34 1.28 16 8 C -0.16 -1.83 9.10 37.16 0.34 -1.49 16 9 C 0.51 7.93 7.00 -10.99 -0.08 7.85 16 10 O -0.55 -9.59 15.30 5.55 0.08 -9.50 16 11 N -0.59 -9.63 2.95 -172.21 -0.51 -10.14 16 12 C 0.10 1.60 6.58 -3.60 -0.02 1.58 16 13 C 0.13 2.51 6.67 -3.59 -0.02 2.48 16 14 N -0.60 -13.50 2.71 -171.77 -0.47 -13.97 16 15 C -0.28 -7.36 9.85 -15.06 -0.15 -7.51 16 16 H 0.08 2.34 8.05 -52.49 -0.42 1.91 16 17 C 0.04 1.12 4.81 -17.43 -0.08 1.04 16 18 N -0.88 -25.52 13.97 55.49 0.78 -24.75 16 19 Si 0.83 20.54 26.45 -169.99 -4.50 16.04 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.08 4.98 56.52 0.28 -5.79 16 23 C 0.13 2.66 4.57 -3.37 -0.02 2.64 16 24 C 0.08 1.27 5.55 -3.36 -0.02 1.26 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.41 4.38 7.72 -40.82 -0.31 4.06 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.85 6.22 -51.93 -0.32 0.53 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.37 7.02 -51.93 -0.36 1.00 16 36 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.03 0.70 6.78 -51.93 -0.35 0.35 16 40 H 0.08 1.74 5.56 -51.93 -0.29 1.45 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.08 4.71 -51.93 -0.24 0.84 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -31.99 331.08 -6.47 -38.46 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.54 Total: 2.64 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -0.12 Total: 13.31 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.47 Total: -57.59 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.50 Total: 16.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.99 -6.47 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.167 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds