Wall clock time and date at job start Tue Mar 31 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.52413 * 2 1 4 4 C 1.53124 * 109.52106 * 239.87807 * 2 1 3 5 5 C 1.53033 * 109.27871 * 182.37156 * 4 2 1 6 6 N 1.46850 * 109.52214 * 59.18706 * 5 4 2 7 7 C 1.46900 * 111.00326 * 174.15924 * 6 5 4 8 8 C 1.50697 * 109.46909 * 293.53113 * 7 6 5 9 9 O 1.21280 * 119.99868 * 353.73999 * 8 7 6 10 10 N 1.34775 * 119.99945 * 173.74330 * 8 7 6 11 11 C 1.46501 * 120.00245 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47377 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00167 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00048 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99902 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47035 * 270.00292 * 16 14 12 18 18 H 1.48502 * 109.47386 * 29.99970 * 16 14 12 19 19 H 1.48495 * 109.47170 * 150.00027 * 16 14 12 20 20 C 1.46858 * 111.19362 * 298.25280 * 6 5 4 21 21 H 1.08993 * 109.46175 * 181.75601 * 20 6 5 22 22 C 1.50700 * 109.46231 * 301.72814 * 20 6 5 23 23 N 1.34779 * 119.99624 * 178.82818 * 22 20 6 24 24 O 1.21277 * 120.00021 * 358.82137 * 22 20 6 25 25 C 1.53037 * 109.52212 * 61.74271 * 20 6 5 26 26 H 1.09007 * 109.47571 * 180.12468 * 1 2 3 27 27 H 1.09007 * 109.47195 * 300.11821 * 1 2 3 28 28 H 1.08998 * 109.47711 * 60.12125 * 1 2 3 29 29 H 1.09010 * 109.50058 * 62.43721 * 4 2 1 30 30 H 1.08991 * 109.50330 * 302.31741 * 4 2 1 31 31 H 1.09001 * 109.46536 * 299.16552 * 5 4 2 32 32 H 1.09002 * 109.45320 * 179.19147 * 5 4 2 33 33 H 1.09002 * 109.47207 * 173.52545 * 7 6 5 34 34 H 1.09000 * 109.47157 * 53.53171 * 7 6 5 35 35 H 0.97005 * 119.99999 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46877 * 59.99646 * 11 10 8 37 37 H 1.08999 * 109.46844 * 300.00414 * 11 10 8 38 38 H 0.96998 * 119.99871 * 359.97438 * 15 14 12 39 39 H 0.96996 * 120.00052 * 359.97438 * 23 22 20 40 40 H 0.97002 * 119.99598 * 180.02562 * 23 22 20 41 41 H 1.08998 * 109.50571 * 180.87514 * 25 20 6 42 42 H 1.08999 * 109.53385 * 60.77924 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5707 -0.7729 -1.2131 6 7 4.0115 -1.4767 -0.0019 7 6 5.4685 -1.6643 -0.0028 8 6 5.8530 -2.6066 -1.1141 9 8 4.9921 -3.1641 -1.7615 10 7 7.1534 -2.8300 -1.3886 11 6 7.5273 -3.7466 -2.4686 12 6 9.0291 -3.8190 -2.5687 13 1 9.6438 -3.2406 -1.8950 14 6 9.6186 -4.6247 -3.5199 15 7 8.8701 -5.3295 -4.3400 16 14 11.4803 -4.7151 -3.6435 17 1 11.9650 -3.6733 -4.5842 18 1 12.0771 -4.4876 -2.3028 19 1 11.8788 -6.0560 -4.1417 20 6 3.5722 -0.7736 1.2102 21 1 3.9401 -1.3017 2.0898 22 6 4.1193 0.6305 1.2024 23 7 3.8243 1.4742 2.2113 24 8 4.8250 1.0013 0.2885 25 6 2.0430 -0.7249 1.2473 26 1 -0.3634 -1.0277 0.0022 27 1 -0.3634 0.5157 0.8890 28 1 -0.3634 0.5119 -0.8910 29 1 1.7150 -0.1882 -2.1396 30 1 1.6455 -1.7395 -1.2680 31 1 3.9664 0.2427 -1.2074 32 1 3.9375 -1.3006 -2.0935 33 1 5.7815 -2.0832 0.9536 34 1 5.9585 -0.7027 -0.1559 35 1 7.8420 -2.3839 -0.8710 36 1 7.1177 -3.3835 -3.4113 37 1 7.1285 -4.7387 -2.2574 38 1 7.9034 -5.2828 -4.2755 39 1 3.2597 1.1777 2.9421 40 1 4.1762 2.3782 2.2061 41 1 1.7175 -0.1895 2.1391 42 1 1.6464 -1.7400 1.2672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778291086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:33 Heat of formation + Delta-G solvation = -82.208124 kcal Electronic energy + Delta-G solvation = -23187.036949 eV Core-core repulsion = 19780.379017 eV Total energy + Delta-G solvation = -3406.657932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03822 -38.71760 -37.48846 -34.85453 -34.21346 -33.87472 -32.34997 -30.93249 -29.42418 -27.06963 -25.25789 -24.19244 -22.78627 -22.16694 -21.20016 -19.63346 -19.58704 -17.50623 -17.37668 -16.79462 -16.06926 -15.90331 -15.43839 -15.05643 -14.74385 -14.22450 -14.16751 -13.96371 -13.85603 -13.67501 -12.97946 -12.53682 -12.48643 -12.45797 -12.32838 -12.11539 -11.78720 -11.50490 -11.23161 -10.96533 -10.83670 -10.73106 -10.61448 -10.39376 -10.28256 -10.14792 -9.82369 -9.05422 -8.73112 -8.62148 -8.05569 -7.87819 -6.47293 -4.20150 2.36417 3.27739 3.40167 3.41372 3.44143 3.58549 3.61350 4.32766 4.47987 4.51951 4.54864 4.66864 4.70001 5.03739 5.15415 5.30819 5.31755 5.39578 5.46646 5.54688 5.59492 5.62540 5.70404 5.73386 5.82420 5.94972 5.99998 6.09660 6.32299 6.40126 6.54270 6.89227 7.00072 7.10059 7.16477 7.29089 7.42604 7.73248 8.01022 8.32808 8.55536 8.77832 9.11050 9.53758 10.93025 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.003526 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.239778 B = 7939.169127 C = 8513.672515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.063 0.937 4 C -0.109 4.109 5 C 0.030 3.970 6 N -0.486 5.486 7 C 0.024 3.976 8 C 0.502 3.498 9 O -0.541 6.541 10 N -0.711 5.711 11 C 0.242 3.758 12 C -0.622 4.622 13 H 0.057 0.943 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.283 1.283 20 C 0.064 3.936 21 H 0.109 0.891 22 C 0.490 3.510 23 N -0.856 5.856 24 O -0.534 6.534 25 C -0.099 4.099 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.391 0.609 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.273 0.727 39 H 0.400 0.600 40 H 0.397 0.603 41 H 0.068 0.932 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 13.934 16.324 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.097 4.097 6 N -0.208 5.208 7 C -0.106 4.106 8 C 0.286 3.714 9 O -0.419 6.419 10 N -0.360 5.360 11 C 0.120 3.880 12 C -0.660 4.660 13 H 0.075 0.925 14 C -0.184 4.184 15 N -0.538 5.538 16 Si 0.906 3.094 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.208 1.208 20 C -0.050 4.050 21 H 0.127 0.873 22 C 0.274 3.726 23 N -0.420 5.420 24 O -0.411 6.411 25 C -0.137 4.137 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.228 0.772 40 H 0.227 0.773 41 H 0.087 0.913 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.822 12.364 14.293 23.414 hybrid contribution -0.618 2.034 1.602 2.662 sum -14.440 14.398 15.896 25.855 Atomic orbital electron populations 1.21790 0.94850 1.02043 1.01434 1.21234 0.95800 0.99071 0.95467 0.91843 1.21625 0.95350 1.01074 0.96586 1.22551 0.95123 0.98957 0.93054 1.62002 1.11347 1.46464 1.01035 1.22161 0.89219 1.00053 0.99213 1.20313 0.83319 0.82809 0.84932 1.90629 1.49258 1.50501 1.51501 1.46255 1.05847 1.46949 1.36970 1.19127 0.95917 0.88078 0.84836 1.22105 0.90589 1.31579 1.21752 0.92493 1.25877 1.07502 0.92635 0.92393 1.70721 1.07543 1.38844 1.36708 0.83409 0.73405 0.76749 0.75811 1.21303 1.21390 1.20810 1.22013 0.97353 0.89057 0.96532 0.87326 1.22279 0.79759 0.89087 0.81488 1.44111 1.55146 1.16791 1.25978 1.90683 1.37743 1.77931 1.34766 1.21639 0.91541 1.02672 0.97878 0.92324 0.92963 0.92659 0.91745 0.90879 0.91579 0.89124 0.88867 0.90062 0.77606 0.96688 0.96593 0.91662 0.77206 0.77283 0.91311 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.15 0.34 -0.77 16 2 C -0.10 -0.93 2.54 -90.50 -0.23 -1.16 16 3 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 4 C -0.11 -1.37 5.38 -26.65 -0.14 -1.51 16 5 C 0.03 0.48 4.79 -3.83 -0.02 0.46 16 6 N -0.49 -7.22 4.29 -229.51 -0.99 -8.20 16 7 C 0.02 0.40 5.00 -4.98 -0.02 0.37 16 8 C 0.50 10.65 7.36 -10.99 -0.08 10.57 16 9 O -0.54 -13.38 14.72 5.56 0.08 -13.30 16 10 N -0.71 -15.96 5.55 -61.48 -0.34 -16.30 16 11 C 0.24 6.63 4.74 -5.20 -0.02 6.61 16 12 C -0.62 -17.64 9.28 -34.44 -0.32 -17.96 16 13 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 14 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 15 N -0.90 -27.95 13.65 55.43 0.76 -27.19 16 16 Si 1.08 25.04 29.90 -169.99 -5.08 19.96 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.06 0.66 2.75 -68.87 -0.19 0.47 16 21 H 0.11 0.92 8.01 -51.93 -0.42 0.51 16 22 C 0.49 5.27 5.70 -10.98 -0.06 5.21 16 23 N -0.86 -5.39 8.76 31.22 0.27 -5.12 16 24 O -0.53 -8.09 12.47 5.56 0.07 -8.02 16 25 C -0.10 -0.82 4.80 -26.65 -0.13 -0.95 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.11 5.22 -51.93 -0.27 0.84 16 32 H 0.09 1.75 6.06 -51.93 -0.31 1.44 16 33 H 0.09 1.28 7.97 -51.93 -0.41 0.86 16 34 H 0.08 1.35 6.06 -51.93 -0.31 1.04 16 35 H 0.39 7.75 8.32 -40.82 -0.34 7.41 16 36 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 37 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 38 H 0.27 8.56 7.22 -40.82 -0.29 8.27 16 39 H 0.40 1.28 8.16 -40.82 -0.33 0.95 16 40 H 0.40 2.25 8.93 -40.82 -0.36 1.88 16 41 H 0.07 0.36 7.47 -51.93 -0.39 -0.03 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -35.87 330.86 -7.61 -43.49 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.39 Total: 7.84 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.98 Total: 1.86 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.30 Total: -56.81 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.15 Total: -21.32 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.87 -7.61 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778291086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.722 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds