Wall clock time and date at job start Tue Mar 31 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.52413 * 2 1 4 4 C 1.53124 * 109.52106 * 239.87807 * 2 1 3 5 5 C 1.53033 * 109.27871 * 182.37156 * 4 2 1 6 6 N 1.46850 * 109.52214 * 59.18706 * 5 4 2 7 7 C 1.46900 * 111.00326 * 174.15924 * 6 5 4 8 8 C 1.50697 * 109.46909 * 293.53113 * 7 6 5 9 9 O 1.21280 * 119.99868 * 353.73999 * 8 7 6 10 10 N 1.34775 * 119.99945 * 173.74330 * 8 7 6 11 11 C 1.46501 * 120.00245 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47377 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00167 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00048 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99902 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47035 * 270.00292 * 16 14 12 18 18 H 1.48502 * 109.47386 * 29.99970 * 16 14 12 19 19 H 1.48495 * 109.47170 * 150.00027 * 16 14 12 20 20 C 1.46858 * 111.19362 * 298.25280 * 6 5 4 21 21 H 1.08993 * 109.46175 * 181.75601 * 20 6 5 22 22 C 1.50700 * 109.46231 * 301.72814 * 20 6 5 23 23 N 1.34779 * 119.99624 * 178.82818 * 22 20 6 24 24 O 1.21277 * 120.00021 * 358.82137 * 22 20 6 25 25 C 1.53037 * 109.52212 * 61.74271 * 20 6 5 26 26 H 1.09007 * 109.47571 * 180.12468 * 1 2 3 27 27 H 1.09007 * 109.47195 * 300.11821 * 1 2 3 28 28 H 1.08998 * 109.47711 * 60.12125 * 1 2 3 29 29 H 1.09010 * 109.50058 * 62.43721 * 4 2 1 30 30 H 1.08991 * 109.50330 * 302.31741 * 4 2 1 31 31 H 1.09001 * 109.46536 * 299.16552 * 5 4 2 32 32 H 1.09002 * 109.45320 * 179.19147 * 5 4 2 33 33 H 1.09002 * 109.47207 * 173.52545 * 7 6 5 34 34 H 1.09000 * 109.47157 * 53.53171 * 7 6 5 35 35 H 0.97005 * 119.99999 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46877 * 59.99646 * 11 10 8 37 37 H 1.08999 * 109.46844 * 300.00414 * 11 10 8 38 38 H 0.96998 * 119.99871 * 359.97438 * 15 14 12 39 39 H 0.96996 * 120.00052 * 359.97438 * 23 22 20 40 40 H 0.97002 * 119.99598 * 180.02562 * 23 22 20 41 41 H 1.08998 * 109.50571 * 180.87514 * 25 20 6 42 42 H 1.08999 * 109.53385 * 60.77924 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5707 -0.7729 -1.2131 6 7 4.0115 -1.4767 -0.0019 7 6 5.4685 -1.6643 -0.0028 8 6 5.8530 -2.6066 -1.1141 9 8 4.9921 -3.1641 -1.7615 10 7 7.1534 -2.8300 -1.3886 11 6 7.5273 -3.7466 -2.4686 12 6 9.0291 -3.8190 -2.5687 13 1 9.6438 -3.2406 -1.8950 14 6 9.6186 -4.6247 -3.5199 15 7 8.8701 -5.3295 -4.3400 16 14 11.4803 -4.7151 -3.6435 17 1 11.9650 -3.6733 -4.5842 18 1 12.0771 -4.4876 -2.3028 19 1 11.8788 -6.0560 -4.1417 20 6 3.5722 -0.7736 1.2102 21 1 3.9401 -1.3017 2.0898 22 6 4.1193 0.6305 1.2024 23 7 3.8243 1.4742 2.2113 24 8 4.8250 1.0013 0.2885 25 6 2.0430 -0.7249 1.2473 26 1 -0.3634 -1.0277 0.0022 27 1 -0.3634 0.5157 0.8890 28 1 -0.3634 0.5119 -0.8910 29 1 1.7150 -0.1882 -2.1396 30 1 1.6455 -1.7395 -1.2680 31 1 3.9664 0.2427 -1.2074 32 1 3.9375 -1.3006 -2.0935 33 1 5.7815 -2.0832 0.9536 34 1 5.9585 -0.7027 -0.1559 35 1 7.8420 -2.3839 -0.8710 36 1 7.1177 -3.3835 -3.4113 37 1 7.1285 -4.7387 -2.2574 38 1 7.9034 -5.2828 -4.2755 39 1 3.2597 1.1777 2.9421 40 1 4.1762 2.3782 2.2061 41 1 1.7175 -0.1895 2.1391 42 1 1.6464 -1.7400 1.2672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778291086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:32 Heat of formation + Delta-G solvation = -113.340087 kcal Electronic energy + Delta-G solvation = -23188.386932 eV Core-core repulsion = 19780.379017 eV Total energy + Delta-G solvation = -3408.007916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01732 -40.39010 -38.45294 -36.48449 -35.63890 -34.71510 -34.44804 -31.83471 -30.67461 -28.80716 -26.64399 -25.10693 -24.64188 -23.47745 -22.00870 -21.43462 -20.43169 -19.40330 -18.28712 -17.80397 -17.53862 -17.19818 -16.67403 -16.27693 -16.13364 -15.64612 -15.49623 -15.30684 -15.01973 -14.84976 -14.49772 -14.32172 -14.06694 -13.78207 -13.35418 -13.12693 -13.07273 -12.95557 -12.57488 -12.50937 -12.26236 -11.89820 -11.75540 -11.53755 -11.33284 -11.18507 -10.99832 -10.78158 -10.71331 -10.56713 -9.96272 -9.17772 -8.82160 -6.57337 1.53944 1.56216 1.63480 1.69041 1.81438 2.19861 2.54640 2.58229 2.96647 3.06153 3.69983 3.74376 3.85652 3.87787 3.99514 4.17236 4.29732 4.37839 4.43734 4.54144 4.67690 4.74022 4.75466 4.79330 4.84312 4.93653 5.02968 5.05640 5.18506 5.22041 5.33823 5.44275 5.48860 5.52390 5.80589 5.91828 5.99252 6.06521 6.29168 6.47186 6.79879 7.22947 7.34417 7.41130 8.57129 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.003526 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.239778 B = 7939.169127 C = 8513.672515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.059 0.941 4 C -0.107 4.107 5 C 0.037 3.963 6 N -0.500 5.500 7 C 0.041 3.959 8 C 0.497 3.503 9 O -0.581 6.581 10 N -0.708 5.708 11 C 0.256 3.744 12 C -0.630 4.630 13 H 0.075 0.925 14 C -0.033 4.033 15 N -0.929 5.929 16 Si 1.134 2.866 17 H -0.272 1.272 18 H -0.260 1.260 19 H -0.283 1.283 20 C 0.060 3.940 21 H 0.138 0.862 22 C 0.490 3.510 23 N -0.830 5.830 24 O -0.585 6.585 25 C -0.095 4.095 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.407 0.593 36 H -0.021 1.021 37 H -0.015 1.015 38 H 0.253 0.747 39 H 0.419 0.581 40 H 0.404 0.596 41 H 0.113 0.887 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 15.535 19.768 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.091 4.091 6 N -0.223 5.223 7 C -0.090 4.090 8 C 0.284 3.716 9 O -0.461 6.461 10 N -0.359 5.359 11 C 0.133 3.867 12 C -0.668 4.668 13 H 0.093 0.907 14 C -0.232 4.232 15 N -0.565 5.565 16 Si 0.953 3.047 17 H -0.197 1.197 18 H -0.184 1.184 19 H -0.208 1.208 20 C -0.052 4.052 21 H 0.156 0.844 22 C 0.274 3.726 23 N -0.395 5.395 24 O -0.466 6.466 25 C -0.133 4.133 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.242 0.758 36 H -0.004 1.004 37 H 0.003 0.997 38 H 0.063 0.937 39 H 0.251 0.749 40 H 0.236 0.764 41 H 0.131 0.869 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.857 14.020 17.838 26.585 hybrid contribution -0.731 1.578 0.569 1.829 sum -14.588 15.597 18.406 28.194 Atomic orbital electron populations 1.21751 0.93077 1.02344 1.02472 1.21187 0.97159 0.98348 0.94306 0.92218 1.21612 0.93094 1.00940 0.98817 1.22352 0.97137 0.97518 0.92071 1.61954 1.10140 1.47869 1.02358 1.22040 0.90625 0.98300 0.97995 1.21337 0.82148 0.82629 0.85473 1.90608 1.50242 1.52147 1.53121 1.46061 1.07176 1.46513 1.36155 1.18637 0.95774 0.87407 0.84919 1.22457 0.90864 1.31506 1.21963 0.90717 1.27708 1.12248 0.91635 0.91582 1.70872 1.06567 1.40686 1.38351 0.82749 0.67353 0.77085 0.77543 1.19700 1.18391 1.20814 1.22253 0.98889 0.89004 0.95080 0.84404 1.22192 0.79266 0.89508 0.81589 1.43839 1.54102 1.16435 1.25078 1.90677 1.40238 1.78723 1.36951 1.21724 0.89643 1.03135 0.98812 0.92395 0.90565 0.93035 0.91922 0.92126 0.92507 0.94098 0.85425 0.90057 0.75796 1.00360 0.99743 0.93739 0.74937 0.76446 0.86898 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.20 71.98 0.66 -1.12 16 2 C -0.09 -1.57 2.54 -10.72 -0.03 -1.59 16 3 H 0.06 1.10 7.31 -2.39 -0.02 1.08 16 4 C -0.11 -2.76 5.38 30.65 0.16 -2.59 16 5 C 0.04 1.22 4.79 86.32 0.41 1.63 16 6 N -0.50 -14.65 4.29 -880.03 -3.78 -18.43 16 7 C 0.04 1.31 5.00 85.56 0.43 1.74 16 8 C 0.50 21.87 7.36 87.66 0.65 22.51 16 9 O -0.58 -30.54 14.72 -3.03 -0.04 -30.59 16 10 N -0.71 -32.75 5.55 -466.80 -2.59 -35.34 16 11 C 0.26 14.76 4.74 85.63 0.41 15.17 16 12 C -0.63 -36.23 9.28 25.60 0.24 -35.99 16 13 H 0.07 3.96 7.60 -2.91 -0.02 3.93 16 14 C -0.03 -1.95 5.46 84.66 0.46 -1.48 16 15 N -0.93 -59.36 13.65 21.45 0.29 -59.06 16 16 Si 1.13 49.56 29.90 68.60 2.05 51.62 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 C 0.06 1.08 2.75 44.19 0.12 1.20 16 21 H 0.14 1.71 8.01 -2.39 -0.02 1.69 16 22 C 0.49 9.29 5.70 87.66 0.50 9.79 16 23 N -0.83 -7.26 8.76 -173.53 -1.52 -8.78 16 24 O -0.58 -17.21 12.47 -3.02 -0.04 -17.24 16 25 C -0.10 -1.24 4.80 30.65 0.15 -1.09 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 27 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.99 5.22 -2.39 -0.01 1.98 16 32 H 0.04 1.73 6.06 -2.39 -0.01 1.71 16 33 H 0.13 3.18 7.97 -2.39 -0.02 3.16 16 34 H 0.08 2.68 6.06 -2.39 -0.01 2.66 16 35 H 0.41 16.07 8.32 -92.70 -0.77 15.30 16 36 H -0.02 -1.37 8.01 -2.38 -0.02 -1.39 16 37 H -0.02 -0.96 8.01 -2.39 -0.02 -0.98 16 38 H 0.25 16.85 7.22 -92.71 -0.67 16.18 16 39 H 0.42 0.55 8.16 -92.71 -0.76 -0.20 16 40 H 0.40 3.20 8.93 -92.71 -0.83 2.37 16 41 H 0.11 0.53 7.47 -2.39 -0.02 0.51 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -84.01 330.86 -2.66 -86.67 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -1.20 Total: 22.99 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.16 Total: 8.16 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -7.59 Total: -121.61 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.08 Total: -47.83 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.62 kcal Total: -84.01 -2.66 -86.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778291086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.665 kcal (2) G-P(sol) polarization free energy of solvation -84.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds