Wall clock time and date at job start Tue Mar 31 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.51916 * 2 1 4 4 C 1.53120 * 109.52011 * 120.12123 * 2 1 3 5 5 C 1.53045 * 109.27382 * 177.62403 * 4 2 1 6 6 N 1.46844 * 109.52143 * 300.82250 * 5 4 2 7 7 C 1.46906 * 110.99887 * 185.83959 * 6 5 4 8 8 C 1.50706 * 109.46929 * 66.04691 * 7 6 5 9 9 O 1.21273 * 119.99806 * 0.02562 * 8 7 6 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47416 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99689 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00343 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99912 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00576 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46695 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47424 * 119.99428 * 16 14 12 19 19 H 1.48495 * 109.47085 * 239.99807 * 16 14 12 20 20 C 1.46853 * 111.20068 * 61.74346 * 6 5 4 21 21 H 1.09001 * 109.46125 * 58.27453 * 20 6 5 22 22 C 1.50700 * 109.46338 * 178.24011 * 20 6 5 23 23 N 1.34774 * 119.99981 * 199.99889 * 22 20 6 24 24 O 1.21279 * 119.99890 * 20.00030 * 22 20 6 25 25 C 1.53033 * 109.52262 * 298.25891 * 20 6 5 26 26 H 1.09003 * 109.47123 * 299.87466 * 1 2 3 27 27 H 1.09002 * 109.47300 * 59.87367 * 1 2 3 28 28 H 1.09000 * 109.47252 * 179.87746 * 1 2 3 29 29 H 1.08996 * 109.49890 * 57.68876 * 4 2 1 30 30 H 1.08994 * 109.50831 * 297.56339 * 4 2 1 31 31 H 1.09000 * 109.46052 * 180.80838 * 5 4 2 32 32 H 1.08997 * 109.46053 * 60.83727 * 5 4 2 33 33 H 1.08998 * 109.47121 * 186.04358 * 7 6 5 34 34 H 1.09000 * 109.47141 * 306.04556 * 7 6 5 35 35 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46625 * 300.00718 * 11 10 8 37 37 H 1.08992 * 109.46738 * 60.00306 * 11 10 8 38 38 H 0.96994 * 120.00185 * 180.02562 * 15 14 12 39 39 H 0.97001 * 119.99853 * 0.02562 * 23 22 20 40 40 H 0.96997 * 119.99865 * 179.97438 * 23 22 20 41 41 H 1.09007 * 109.50330 * 299.23709 * 25 20 6 42 42 H 1.09002 * 109.50417 * 179.12117 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7242 1.2483 5 6 3.5709 -0.7729 1.2129 6 7 4.0116 -1.4766 0.0017 7 6 5.4686 -1.6641 0.0025 8 6 5.8542 -2.5985 1.1202 9 8 4.9994 -3.0628 1.8444 10 7 7.1488 -2.9189 1.3143 11 6 7.5238 -3.8268 2.4012 12 6 9.0184 -4.0193 2.4020 13 1 9.6280 -3.5160 1.6661 14 6 9.6075 -4.8387 3.3413 15 7 8.8651 -5.4520 4.2371 16 14 11.4601 -5.0779 3.3419 17 1 12.0619 -4.2844 2.2402 18 1 12.0175 -4.6239 4.6412 19 1 11.7736 -6.5159 3.1441 20 6 3.5721 -0.7735 -1.2104 21 1 3.9679 0.2421 -1.2048 22 6 4.0808 -1.5036 -2.4267 23 7 4.1622 -0.8652 -3.6108 24 8 4.4169 -2.6657 -2.3399 25 6 2.0430 -0.7248 -1.2474 26 1 -0.3633 0.5119 0.8911 27 1 -0.3634 0.5158 -0.8889 28 1 -0.3634 -1.0276 -0.0022 29 1 1.6456 -1.7395 1.2679 30 1 1.7152 -0.1883 2.1395 31 1 3.9379 -1.3006 2.0933 32 1 3.9666 0.2427 1.2072 33 1 5.7806 -2.0901 -0.9511 34 1 5.9588 -0.7015 0.1482 35 1 7.8325 -2.5478 0.7348 36 1 7.2121 -3.4002 3.3546 37 1 7.0332 -4.7892 2.2561 38 1 9.2795 -6.0281 4.8982 39 1 3.8937 0.0644 -3.6801 40 1 4.4900 -1.3350 -4.3935 41 1 1.6469 -1.7401 -1.2669 42 1 1.7174 -0.1893 -2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778291088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:36 Heat of formation + Delta-G solvation = -79.657341 kcal Electronic energy + Delta-G solvation = -22952.185911 eV Core-core repulsion = 19545.638589 eV Total energy + Delta-G solvation = -3406.547322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57316 -38.67063 -37.83318 -34.63410 -33.94475 -33.82443 -32.24594 -31.04531 -29.43318 -27.36015 -25.41831 -24.35440 -22.76301 -22.07744 -20.41123 -19.80495 -19.54241 -17.57087 -17.08565 -16.86715 -15.85939 -15.61392 -15.17879 -15.08031 -14.81753 -14.41695 -14.26991 -13.98001 -13.76677 -13.62261 -13.05551 -12.89884 -12.44253 -12.27694 -12.00442 -11.90174 -11.75506 -11.40817 -11.26183 -10.97014 -10.89391 -10.84300 -10.77824 -10.34207 -10.23974 -9.83736 -9.72903 -9.31140 -8.86689 -8.66993 -8.15923 -7.74554 -6.11010 -4.17326 2.48632 3.17760 3.27035 3.33810 3.37156 3.53396 3.70887 4.31123 4.46868 4.56312 4.58652 4.67542 4.86727 4.99762 5.08745 5.24914 5.34158 5.36273 5.43717 5.48534 5.54565 5.62068 5.66931 5.80777 5.82061 5.89018 5.99769 6.06928 6.27508 6.38393 6.58160 6.92905 7.06540 7.23905 7.41178 7.56171 7.61239 7.75681 8.04166 8.14111 8.74013 8.87149 9.24280 9.49546 10.99333 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.003634 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.746374 B = 7703.538582 C = 8515.661236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.111 4.111 5 C 0.052 3.948 6 N -0.495 5.495 7 C 0.026 3.974 8 C 0.505 3.495 9 O -0.538 6.538 10 N -0.716 5.716 11 C 0.252 3.748 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.069 3.931 21 H 0.059 0.941 22 C 0.515 3.485 23 N -0.859 5.859 24 O -0.511 6.511 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.025 0.975 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.388 0.612 36 H 0.025 0.975 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.399 0.601 40 H 0.402 0.598 41 H 0.080 0.920 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 16.321 -14.225 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.075 4.075 6 N -0.220 5.220 7 C -0.105 4.105 8 C 0.290 3.710 9 O -0.416 6.416 10 N -0.365 5.365 11 C 0.131 3.869 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.043 4.043 21 H 0.077 0.923 22 C 0.299 3.701 23 N -0.424 5.424 24 O -0.385 6.385 25 C -0.137 4.137 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.044 0.956 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.220 0.780 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.227 0.773 40 H 0.232 0.768 41 H 0.099 0.901 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.012 14.599 -13.250 24.188 hybrid contribution 1.823 1.086 -0.682 2.228 sum -12.189 15.685 -13.931 24.263 Atomic orbital electron populations 1.21798 0.94826 1.02131 1.01480 1.21196 0.95809 0.99025 0.95055 0.91443 1.21652 0.94874 1.01607 0.96719 1.22338 0.95691 0.95641 0.93854 1.61286 1.11525 1.48990 1.00247 1.22210 0.88373 0.98613 1.01298 1.20133 0.83328 0.82510 0.85071 1.90608 1.49259 1.54199 1.47576 1.46416 1.06331 1.48767 1.34979 1.19072 0.95023 0.88415 0.84416 1.21279 0.91572 1.29288 1.15769 0.91918 1.24956 0.98783 0.95250 0.95103 1.69991 1.35446 1.29723 1.17166 0.86368 0.84600 0.78033 0.77942 1.19669 1.20846 1.20811 1.21608 0.97533 0.95457 0.89699 0.92331 1.20587 0.77433 0.87425 0.84673 1.43907 1.70254 1.16640 1.11600 1.90810 1.46567 1.16378 1.84717 1.21591 0.91470 1.02504 0.98136 0.92528 0.92901 0.92370 0.90498 0.91406 0.87689 0.95640 0.87116 0.93065 0.77964 0.95655 0.95533 0.92564 0.77327 0.76758 0.90103 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.21 37.16 0.34 -0.75 16 2 C -0.09 -0.82 2.79 -90.50 -0.25 -1.07 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -1.28 5.38 -26.65 -0.14 -1.43 16 5 C 0.05 0.74 5.11 -3.83 -0.02 0.72 16 6 N -0.50 -7.59 3.99 -229.50 -0.92 -8.50 16 7 C 0.03 0.43 5.04 -4.97 -0.03 0.40 16 8 C 0.51 10.93 7.50 -10.99 -0.08 10.84 16 9 O -0.54 -13.57 14.35 5.56 0.08 -13.49 16 10 N -0.72 -16.10 5.55 -61.47 -0.34 -16.44 16 11 C 0.25 6.95 5.43 -5.19 -0.03 6.93 16 12 C -0.54 -15.16 9.28 -34.44 -0.32 -15.48 16 13 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.07 0.77 2.24 -68.87 -0.15 0.62 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 C 0.52 6.18 6.40 -10.99 -0.07 6.11 16 23 N -0.86 -5.98 8.87 31.22 0.28 -5.70 16 24 O -0.51 -8.85 15.47 5.56 0.09 -8.76 16 25 C -0.10 -0.93 4.64 -26.66 -0.12 -1.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.11 1.87 5.80 -51.93 -0.30 1.57 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 1.87 5.41 -51.93 -0.28 1.59 16 34 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.39 7.57 8.32 -40.82 -0.34 7.24 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 39 H 0.40 1.45 8.83 -40.82 -0.36 1.09 16 40 H 0.40 2.48 8.93 -40.82 -0.36 2.12 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -36.10 339.86 -7.63 -43.72 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.68 Total: 6.21 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.97 Total: 7.52 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.24 Total: -56.64 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.10 -7.63 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778291088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.935 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds