Wall clock time and date at job start Tue Mar 31 2020 02:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47365 * 2 1 4 4 N 1.46495 * 109.47146 * 120.00718 * 2 1 3 5 5 C 1.46010 * 118.53687 * 119.97909 * 4 2 1 6 6 C 1.52995 * 110.04186 * 161.86060 * 5 4 2 7 7 N 1.47193 * 108.71920 * 50.30012 * 6 5 4 8 8 C 1.46899 * 111.00221 * 167.61990 * 7 6 5 9 9 C 1.50698 * 109.46987 * 188.93639 * 8 7 6 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 C 1.50703 * 109.47138 * 180.28062 * 12 11 9 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99824 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00502 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99575 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47245 * 60.00392 * 17 15 13 19 19 H 1.48504 * 109.46709 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47176 * 299.99915 * 17 15 13 21 21 C 1.46905 * 110.17258 * 290.99356 * 7 6 5 22 22 C 1.33712 * 118.53634 * 299.99277 * 4 2 1 23 23 O 1.21281 * 118.62616 * 1.66770 * 22 4 2 24 24 H 1.09007 * 109.46498 * 299.99717 * 1 2 3 25 25 H 1.09002 * 109.47363 * 59.99125 * 1 2 3 26 26 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46498 * 240.00282 * 2 1 3 28 28 H 1.08998 * 109.46732 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47095 * 300.00568 * 3 2 1 30 30 H 1.09000 * 109.46688 * 60.00611 * 3 2 1 31 31 H 1.09001 * 109.37352 * 282.03044 * 5 4 2 32 32 H 1.08993 * 109.38076 * 41.79516 * 5 4 2 33 33 H 1.09000 * 109.61144 * 290.52546 * 6 5 4 34 34 H 1.08997 * 109.58856 * 170.06203 * 6 5 4 35 35 H 1.09003 * 109.46477 * 68.94128 * 8 7 6 36 36 H 1.08993 * 109.47002 * 308.94454 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 0.96997 * 120.00009 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.38338 * 170.45343 * 21 7 6 42 42 H 1.09002 * 109.37990 * 290.23975 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.8551 -1.8749 1.0248 6 6 3.6136 -2.1726 2.3197 7 7 2.6559 -2.1792 3.4374 8 6 3.2651 -2.7425 4.6496 9 6 2.2037 -2.9366 5.7016 10 8 1.0529 -2.6357 5.4648 11 7 2.5332 -3.4455 6.9053 12 6 1.5024 -3.6285 7.9301 13 6 2.1283 -4.2018 9.1754 14 1 3.1878 -4.4095 9.2008 15 6 1.3480 -4.4622 10.2820 16 7 0.0576 -4.2108 10.2506 17 14 2.1238 -5.1736 11.8253 18 1 3.1640 -4.2421 12.3309 19 1 1.0787 -5.3602 12.8637 20 1 2.7452 -6.4844 11.5079 21 6 2.1544 -0.8203 3.6828 22 6 1.6776 -0.2088 2.3959 23 8 0.9531 0.7624 2.4475 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 2.2265 -2.7281 0.7697 32 1 3.5701 -1.6995 0.2211 33 1 4.3665 -1.4026 2.4880 34 1 4.0951 -3.1476 2.2453 35 1 4.0274 -2.0593 5.0242 36 1 3.7227 -3.7031 4.4134 37 1 3.4535 -3.6865 7.0947 38 1 1.0463 -2.6662 8.1628 39 1 0.7388 -4.3123 7.5594 40 1 -0.4912 -4.3937 11.0293 41 1 1.3274 -0.8624 4.3917 42 1 2.9556 -0.2085 4.0975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780369287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:53 Heat of formation + Delta-G solvation = -58.588714 kcal Electronic energy + Delta-G solvation = -22702.748427 eV Core-core repulsion = 19297.114709 eV Total energy + Delta-G solvation = -3405.633718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81736 -39.01090 -37.02696 -36.01567 -34.17351 -32.66348 -32.32006 -29.76237 -28.92673 -27.27048 -26.93384 -24.84134 -23.57845 -22.25656 -21.37992 -19.71970 -18.53738 -17.48907 -17.06459 -16.31298 -16.00412 -15.73647 -15.23361 -15.12329 -14.64121 -14.57149 -14.13620 -14.00776 -13.82155 -13.31472 -13.20297 -12.72410 -12.57590 -12.45295 -12.23855 -12.06489 -11.93524 -11.82371 -11.58088 -11.36013 -11.17553 -11.11219 -10.99317 -10.85060 -10.32318 -9.52185 -9.42259 -9.10790 -8.79295 -8.74168 -8.46305 -7.89035 -6.17068 -4.24494 2.63786 2.84323 3.24430 3.29120 3.30653 3.31601 3.45451 4.15647 4.36048 4.40879 4.52881 4.80922 4.89790 4.92746 5.02332 5.07982 5.18814 5.23927 5.25005 5.36137 5.39814 5.48864 5.52846 5.56629 5.63958 5.66418 5.82610 5.87181 6.12686 6.26078 6.50302 6.63173 6.78225 7.30401 7.38437 7.42562 7.51300 7.65171 7.96366 8.17804 8.60140 8.77053 9.08417 9.42152 10.93022 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.003033 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.349537 B = 9229.438067 C = 9599.120838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 C -0.169 4.169 4 N -0.603 5.603 5 C 0.121 3.879 6 C 0.034 3.966 7 N -0.512 5.512 8 C 0.034 3.966 9 C 0.497 3.503 10 O -0.537 6.537 11 N -0.713 5.713 12 C 0.251 3.749 13 C -0.545 4.545 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.033 3.967 22 C 0.530 3.470 23 O -0.543 6.543 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.267 0.733 41 H 0.138 0.862 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.328 5.125 -20.533 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 C -0.227 4.227 4 N -0.338 5.338 5 C -0.002 4.002 6 C -0.095 4.095 7 N -0.238 5.238 8 C -0.097 4.097 9 C 0.280 3.720 10 O -0.415 6.415 11 N -0.362 5.362 12 C 0.131 3.869 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.097 4.097 22 C 0.319 3.681 23 O -0.420 6.420 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.514 5.527 -20.654 23.014 hybrid contribution 1.614 -0.232 1.190 2.019 sum 10.129 5.295 -19.464 22.571 Atomic orbital electron populations 1.22226 0.94645 1.02354 1.03676 1.21028 0.95121 0.93271 0.86744 1.22210 1.00514 0.96266 1.03721 1.47584 1.51350 1.28830 1.05999 1.21510 0.93642 0.87854 0.97211 1.22551 0.93554 1.02558 0.90808 1.62153 1.35585 1.20827 1.05235 1.22113 0.95750 1.01587 0.90276 1.20246 0.89554 0.79005 0.83173 1.90651 1.20499 1.50732 1.79644 1.46445 1.13301 1.62795 1.13659 1.19096 0.86457 0.97210 0.84177 1.21183 0.95068 1.44389 0.97701 0.91971 1.24953 0.94773 0.95330 0.98940 1.69961 1.04790 1.46853 1.30585 0.86478 0.78840 0.79515 0.82078 1.20084 1.21060 1.20071 1.22579 1.03153 0.87883 0.96107 1.20088 0.79928 0.83370 0.84719 1.90630 1.36652 1.27607 1.87094 0.89752 0.92173 0.92751 0.89998 0.93118 0.91952 0.90070 0.90776 0.90450 0.93705 0.88438 0.91943 0.87691 0.77789 0.95545 0.95474 0.92349 0.84483 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.09 37.16 0.34 -1.56 16 2 C 0.14 1.41 3.24 -67.93 -0.22 1.19 16 3 C -0.17 -1.66 9.09 37.16 0.34 -1.32 16 4 N -0.60 -6.87 2.80 -166.99 -0.47 -7.34 16 5 C 0.12 1.01 6.49 -4.31 -0.03 0.98 16 6 C 0.03 0.29 5.60 -3.67 -0.02 0.27 16 7 N -0.51 -6.67 4.47 -237.54 -1.06 -7.73 16 8 C 0.03 0.43 5.44 -4.98 -0.03 0.40 16 9 C 0.50 9.39 7.59 -10.99 -0.08 9.31 16 10 O -0.54 -12.57 14.31 5.55 0.08 -12.49 16 11 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 12 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 13 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 14 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.03 0.48 5.14 -5.19 -0.03 0.46 16 22 C 0.53 7.82 6.98 -11.68 -0.08 7.74 16 23 O -0.54 -9.46 12.68 5.56 0.07 -9.39 16 24 H 0.08 1.20 5.93 -51.92 -0.31 0.90 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.61 7.84 -51.92 -0.41 0.20 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.03 6.05 -51.93 -0.31 0.72 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.10 0.63 7.91 -51.93 -0.41 0.21 16 35 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.11 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.39 6.56 8.32 -40.82 -0.34 6.22 16 38 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.14 2.55 6.01 -51.93 -0.31 2.24 16 42 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -33.91 337.94 -7.84 -41.75 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.67 Total: 3.67 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.26 Total: 10.75 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -1.13 Total: -55.05 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.15 Total: -21.88 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.91 -7.84 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780369287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.834 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds