Wall clock time and date at job start Tue Mar 31 2020 02:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47365 * 2 1 4 4 N 1.46495 * 109.47146 * 120.00718 * 2 1 3 5 5 C 1.46010 * 118.53687 * 119.97909 * 4 2 1 6 6 C 1.52995 * 110.04186 * 161.86060 * 5 4 2 7 7 N 1.47193 * 108.71920 * 50.30012 * 6 5 4 8 8 C 1.46899 * 111.00221 * 167.61990 * 7 6 5 9 9 C 1.50698 * 109.46987 * 188.93639 * 8 7 6 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 C 1.50703 * 109.47138 * 180.28062 * 12 11 9 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99824 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00502 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99575 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47245 * 60.00392 * 17 15 13 19 19 H 1.48504 * 109.46709 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47176 * 299.99915 * 17 15 13 21 21 C 1.46905 * 110.17258 * 290.99356 * 7 6 5 22 22 C 1.33712 * 118.53634 * 299.99277 * 4 2 1 23 23 O 1.21281 * 118.62616 * 1.66770 * 22 4 2 24 24 H 1.09007 * 109.46498 * 299.99717 * 1 2 3 25 25 H 1.09002 * 109.47363 * 59.99125 * 1 2 3 26 26 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46498 * 240.00282 * 2 1 3 28 28 H 1.08998 * 109.46732 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47095 * 300.00568 * 3 2 1 30 30 H 1.09000 * 109.46688 * 60.00611 * 3 2 1 31 31 H 1.09001 * 109.37352 * 282.03044 * 5 4 2 32 32 H 1.08993 * 109.38076 * 41.79516 * 5 4 2 33 33 H 1.09000 * 109.61144 * 290.52546 * 6 5 4 34 34 H 1.08997 * 109.58856 * 170.06203 * 6 5 4 35 35 H 1.09003 * 109.46477 * 68.94128 * 8 7 6 36 36 H 1.08993 * 109.47002 * 308.94454 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 0.96997 * 120.00009 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.38338 * 170.45343 * 21 7 6 42 42 H 1.09002 * 109.37990 * 290.23975 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.8551 -1.8749 1.0248 6 6 3.6136 -2.1726 2.3197 7 7 2.6559 -2.1792 3.4374 8 6 3.2651 -2.7425 4.6496 9 6 2.2037 -2.9366 5.7016 10 8 1.0529 -2.6357 5.4648 11 7 2.5332 -3.4455 6.9053 12 6 1.5024 -3.6285 7.9301 13 6 2.1283 -4.2018 9.1754 14 1 3.1878 -4.4095 9.2008 15 6 1.3480 -4.4622 10.2820 16 7 0.0576 -4.2108 10.2506 17 14 2.1238 -5.1736 11.8253 18 1 3.1640 -4.2421 12.3309 19 1 1.0787 -5.3602 12.8637 20 1 2.7452 -6.4844 11.5079 21 6 2.1544 -0.8203 3.6828 22 6 1.6776 -0.2088 2.3959 23 8 0.9531 0.7624 2.4475 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 2.2265 -2.7281 0.7697 32 1 3.5701 -1.6995 0.2211 33 1 4.3665 -1.4026 2.4880 34 1 4.0951 -3.1476 2.2453 35 1 4.0274 -2.0593 5.0242 36 1 3.7227 -3.7031 4.4134 37 1 3.4535 -3.6865 7.0947 38 1 1.0463 -2.6662 8.1628 39 1 0.7388 -4.3123 7.5594 40 1 -0.4912 -4.3937 11.0293 41 1 1.3274 -0.8624 4.3917 42 1 2.9556 -0.2085 4.0975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780369287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:53 Heat of formation + Delta-G solvation = -86.032248 kcal Electronic energy + Delta-G solvation = -22703.938468 eV Core-core repulsion = 19297.114709 eV Total energy + Delta-G solvation = -3406.823759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82092 -40.49508 -38.13901 -37.00966 -36.05622 -34.34479 -33.51124 -30.68168 -30.34617 -28.59822 -28.09839 -25.98871 -24.74827 -23.91714 -22.20278 -21.35510 -19.48848 -18.99827 -18.25242 -17.54780 -17.22741 -17.06166 -16.78585 -16.36908 -16.06869 -15.74855 -15.45094 -15.11061 -14.79611 -14.57172 -14.27362 -14.09711 -14.05455 -13.67879 -13.47588 -13.25204 -12.99451 -12.91639 -12.75296 -12.69535 -12.52970 -12.37181 -12.22007 -12.10788 -11.87521 -11.50081 -10.78406 -10.75483 -10.49257 -9.80445 -9.69046 -9.43507 -8.28206 -6.45216 1.43405 1.47694 1.53401 1.55863 1.81924 1.97927 2.26218 2.44359 2.91624 3.06656 3.52296 3.82396 3.93498 4.05273 4.05543 4.14899 4.28020 4.33060 4.37941 4.42504 4.60246 4.62886 4.72637 4.75633 4.81982 4.91240 4.94089 5.03330 5.12750 5.25590 5.27839 5.36999 5.50057 5.61322 5.66483 5.74473 5.86315 5.94299 6.45265 6.66681 6.97265 7.13718 7.24887 7.57031 8.83838 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.003033 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.349537 B = 9229.438067 C = 9599.120838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.136 3.864 3 C -0.163 4.163 4 N -0.597 5.597 5 C 0.113 3.887 6 C 0.034 3.966 7 N -0.533 5.533 8 C 0.050 3.950 9 C 0.489 3.511 10 O -0.590 6.590 11 N -0.708 5.708 12 C 0.268 3.732 13 C -0.555 4.555 14 H 0.087 0.913 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.260 1.260 21 C 0.038 3.962 22 C 0.522 3.478 23 O -0.583 6.583 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.122 0.878 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.410 0.590 38 H -0.017 1.017 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.087 0.913 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 3.793 -22.263 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 C -0.221 4.221 4 N -0.329 5.329 5 C -0.009 4.009 6 C -0.093 4.093 7 N -0.259 5.259 8 C -0.080 4.080 9 C 0.276 3.724 10 O -0.471 6.471 11 N -0.359 5.359 12 C 0.145 3.855 13 C -0.593 4.593 14 H 0.105 0.895 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.184 1.184 21 C -0.093 4.093 22 C 0.310 3.690 23 O -0.464 6.464 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.140 0.860 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.163 0.837 37 H 0.246 0.754 38 H 0.001 0.999 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.632 4.168 -22.444 26.090 hybrid contribution 0.306 0.201 1.615 1.656 sum 12.938 4.368 -20.829 24.906 Atomic orbital electron populations 1.22182 0.96081 1.01648 1.02792 1.21268 0.94098 0.93859 0.87390 1.22135 1.01198 0.95974 1.02805 1.47705 1.50754 1.29265 1.05189 1.21870 0.94079 0.86438 0.98510 1.22762 0.92849 1.05035 0.88635 1.62059 1.37966 1.19454 1.06465 1.22072 0.93310 1.04398 0.88203 1.21516 0.90438 0.76873 0.83577 1.90647 1.23523 1.52354 1.80557 1.46151 1.13002 1.63437 1.13275 1.18475 0.87179 0.93815 0.86013 1.21615 0.96238 1.43794 0.97652 0.89525 1.26103 0.95126 0.95535 1.03040 1.70144 1.06833 1.48404 1.31809 0.85202 0.77841 0.79250 0.76888 1.18595 1.21350 1.18441 1.22288 1.01959 0.89611 0.95401 1.20149 0.79864 0.83133 0.85857 1.90620 1.38505 1.29464 1.87804 0.93699 0.89970 0.93298 0.85983 0.91822 0.90109 0.93724 0.90733 0.86237 0.92113 0.85090 0.88766 0.83669 0.75429 0.99947 0.99749 0.92323 0.89507 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.09 71.98 0.65 -3.07 16 2 C 0.14 2.42 3.24 44.99 0.15 2.57 16 3 C -0.16 -2.95 9.09 71.98 0.65 -2.30 16 4 N -0.60 -12.57 2.80 -801.23 -2.24 -14.81 16 5 C 0.11 1.42 6.49 86.47 0.56 1.98 16 6 C 0.03 0.44 5.60 86.25 0.48 0.92 16 7 N -0.53 -12.87 4.47 -905.44 -4.05 -16.92 16 8 C 0.05 1.15 5.44 85.56 0.47 1.61 16 9 C 0.49 18.73 7.59 87.66 0.67 19.39 16 10 O -0.59 -29.39 14.31 -3.04 -0.04 -29.43 16 11 N -0.71 -28.74 5.55 -466.78 -2.59 -31.33 16 12 C 0.27 14.74 5.43 85.63 0.46 15.21 16 13 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 14 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 17 Si 0.99 42.17 29.54 68.60 2.03 44.19 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 C 0.04 1.15 5.14 85.42 0.44 1.59 16 22 C 0.52 15.74 6.98 87.68 0.61 16.35 16 23 O -0.58 -21.83 12.68 -3.03 -0.04 -21.87 16 24 H 0.04 1.36 5.93 -2.38 -0.01 1.35 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.12 1.26 7.84 -2.38 -0.02 1.24 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.16 6.05 -2.39 -0.01 1.15 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.12 0.60 8.09 -2.39 -0.02 0.58 16 33 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.13 0.86 7.91 -2.39 -0.02 0.85 16 35 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 36 H 0.15 2.22 7.93 -2.39 -0.02 2.20 16 37 H 0.41 13.13 8.32 -92.71 -0.77 12.36 16 38 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.09 3.54 6.01 -2.39 -0.01 3.52 16 42 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 Total: -1.00 -82.95 337.94 -0.56 -83.51 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.24 Total: 18.35 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 5.84 Total: 25.04 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -8.59 Total: -119.79 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.08 Total: -51.30 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -82.95 -0.56 -83.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780369287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.519 kcal (2) G-P(sol) polarization free energy of solvation -82.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds