Wall clock time and date at job start Tue Mar 31 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47102 * 2 1 4 4 N 1.46901 * 109.47285 * 119.99665 * 2 1 3 5 5 C 1.46899 * 111.00027 * 295.65140 * 4 2 1 6 6 C 1.50704 * 109.46931 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00088 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99432 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99652 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00213 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99816 * 179.97438 * 9 8 6 12 12 N 1.31420 * 119.99738 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00462 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47223 * 89.99480 * 13 11 9 15 15 H 1.48500 * 109.47538 * 210.00078 * 13 11 9 16 16 H 1.48500 * 109.47103 * 330.00030 * 13 11 9 17 17 C 1.50698 * 109.47438 * 240.00204 * 2 1 3 18 18 O 1.21278 * 120.00314 * 97.96358 * 17 2 1 19 19 N 1.34779 * 119.99598 * 277.96653 * 17 2 1 20 20 C 1.47028 * 125.64911 * 4.79833 * 19 17 2 21 21 C 1.54311 * 107.27193 * 180.97242 * 20 19 17 22 22 C 1.55153 * 102.86788 * 22.52361 * 21 20 19 23 23 C 1.47424 * 125.64726 * 185.10844 * 19 17 2 24 24 H 1.09001 * 109.47161 * 300.00009 * 1 2 3 25 25 H 1.09002 * 109.46600 * 60.00226 * 1 2 3 26 26 H 1.08994 * 109.46767 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47040 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46704 * 299.99924 * 3 2 1 29 29 H 1.09001 * 109.47120 * 59.99966 * 3 2 1 30 30 H 1.00900 * 111.00333 * 171.69557 * 4 2 1 31 31 H 1.09001 * 109.47193 * 299.99631 * 5 4 2 32 32 H 1.08998 * 109.47361 * 59.99416 * 5 4 2 33 33 H 0.96996 * 120.00810 * 0.02562 * 8 6 5 34 34 H 0.96993 * 119.99850 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.88135 * 300.51274 * 20 19 17 36 36 H 1.08996 * 109.88097 * 61.67977 * 20 19 17 37 37 H 1.09011 * 110.92412 * 264.10814 * 21 20 19 38 38 H 1.08995 * 110.59047 * 140.79217 * 21 20 19 39 39 H 1.08996 * 111.00422 * 206.22937 * 22 21 20 40 40 H 1.08997 * 111.00159 * 82.38081 * 22 21 20 41 41 H 1.08993 * 110.36912 * 274.67170 * 23 19 17 42 42 H 1.08999 * 110.36567 * 36.88841 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.6355 0.0312 2.4188 6 6 2.1536 -0.7078 3.6257 7 8 2.7815 -1.7357 3.4840 8 7 1.9200 -0.2257 4.8624 9 6 2.3908 -0.8982 5.9605 10 1 2.9493 -1.8140 5.8344 11 6 2.1505 -0.4010 7.2355 12 7 2.6014 -1.0459 8.2881 13 14 1.1852 1.1833 7.4537 14 1 -0.2613 0.8692 7.5731 15 1 1.6443 1.8774 8.6836 16 1 1.4052 2.0628 6.2776 17 6 2.0324 -0.7103 -1.2304 18 8 2.3718 -0.0711 -2.2036 19 7 2.1045 -2.0561 -1.2494 20 6 1.6355 -2.9544 -0.1841 21 6 1.9460 -4.3979 -0.6324 22 6 3.0886 -4.2014 -1.6634 23 6 2.6726 -2.8708 -2.3388 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.0190 -0.8254 1.1576 31 1 2.0618 1.0341 2.3957 32 1 0.5490 0.0994 2.4737 33 1 1.4181 0.5965 4.9758 34 1 2.4333 -0.6990 9.1781 35 1 2.1594 -2.7322 0.7455 36 1 0.5612 -2.8345 -0.0444 37 1 1.0757 -4.8549 -1.1036 38 1 2.2873 -4.9966 0.2121 39 1 3.1074 -5.0172 -2.3861 40 1 4.0524 -4.1015 -1.1642 41 1 1.9213 -3.0540 -3.1069 42 1 3.5418 -2.3744 -2.7701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796591182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:33 Heat of formation + Delta-G solvation = -56.588309 kcal Electronic energy + Delta-G solvation = -23321.618900 eV Core-core repulsion = 19916.071927 eV Total energy + Delta-G solvation = -3405.546974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48211 -38.56377 -37.54852 -36.43442 -34.00673 -31.76569 -31.58337 -30.92684 -29.00346 -27.43339 -26.86719 -24.79768 -23.66241 -21.38219 -21.01224 -19.39432 -18.92425 -18.36075 -17.33586 -16.47895 -15.90988 -15.69155 -14.98987 -14.92418 -14.62862 -14.13229 -13.84456 -13.67547 -13.41838 -13.21391 -12.97652 -12.93534 -12.58445 -12.48851 -12.22938 -12.18654 -11.88517 -11.74634 -11.46877 -11.33141 -11.27161 -11.20448 -11.07519 -10.70652 -10.62306 -10.01197 -9.70857 -9.60714 -8.70198 -8.56775 -8.22504 -8.16766 -6.34423 -3.86061 2.57281 2.99956 3.01783 3.04374 3.13114 3.69253 3.94944 4.07494 4.35002 4.64448 4.65795 4.71605 4.87432 4.96097 5.00986 5.18620 5.28480 5.37602 5.46005 5.50011 5.58956 5.61886 5.67109 5.70162 5.72976 5.80571 5.86626 5.87796 5.95504 6.02364 6.10076 6.14996 6.28160 6.53262 6.87058 7.33078 7.54025 7.55703 8.10508 8.18207 8.55586 8.91202 9.38728 9.77854 10.78592 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.004309 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.852058 B = 6496.411346 C = 7347.086933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 C -0.168 4.168 4 N -0.651 5.651 5 C 0.040 3.960 6 C 0.451 3.549 7 O -0.566 6.566 8 N -0.589 5.589 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.042 3.958 12 N -0.881 5.881 13 Si 0.879 3.121 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.270 1.270 17 C 0.543 3.457 18 O -0.550 6.550 19 N -0.606 5.606 20 C 0.099 3.901 21 C -0.136 4.136 22 C -0.133 4.133 23 C 0.104 3.896 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.354 0.646 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.370 0.630 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 0.343 -17.368 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.002 3.998 3 C -0.228 4.228 4 N -0.285 5.285 5 C -0.092 4.092 6 C 0.237 3.763 7 O -0.448 6.448 8 N -0.228 5.228 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.520 5.520 13 Si 0.706 3.294 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.195 1.195 17 C 0.331 3.669 18 O -0.427 6.427 19 N -0.339 5.339 20 C -0.024 4.024 21 C -0.174 4.174 22 C -0.171 4.171 23 C -0.019 4.019 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.174 0.826 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.611 -0.395 -17.706 18.300 hybrid contribution -0.206 1.986 0.425 2.042 sum -4.817 1.591 -17.280 18.010 Atomic orbital electron populations 1.21837 0.91783 1.03241 1.02587 1.21096 0.97344 0.92619 0.88789 1.22345 1.01774 0.95616 1.03039 1.60555 1.20664 1.48039 0.99213 1.21861 1.01788 0.95802 0.89776 1.19640 0.85544 0.87588 0.83565 1.90554 1.43588 1.25151 1.85486 1.42194 1.50689 1.24005 1.05954 1.19422 1.32784 1.08644 0.82527 0.86252 1.25039 0.97752 0.98134 0.95177 1.69622 1.44962 1.39137 0.98324 0.86678 0.80834 0.83312 0.78586 1.19585 1.20202 1.19530 1.20068 0.77463 0.80658 0.88762 1.90679 1.49961 1.65565 1.36478 1.48437 1.60060 1.05033 1.20400 1.22430 1.00354 0.87285 0.92281 1.22707 0.98378 0.96839 0.99495 1.22772 0.99380 0.96387 0.98579 1.22207 0.98313 0.91146 0.90214 0.91048 0.91893 0.91263 0.92228 0.91027 0.91239 0.82614 0.92900 0.88969 0.79691 0.91590 0.86885 0.91760 0.91248 0.89745 0.90202 0.90432 0.91857 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.32 37.16 0.31 -1.19 16 2 C 0.10 1.22 0.61 -132.75 -0.08 1.14 16 3 C -0.17 -2.04 7.59 37.16 0.28 -1.76 16 4 N -0.65 -9.25 2.74 -102.39 -0.28 -9.53 16 5 C 0.04 0.61 5.36 -4.97 -0.03 0.58 16 6 C 0.45 9.55 7.82 -10.98 -0.09 9.46 16 7 O -0.57 -14.09 15.78 5.55 0.09 -14.00 16 8 N -0.59 -13.40 5.09 -10.96 -0.06 -13.45 16 9 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 10 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 11 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 12 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 13 Si 0.88 18.90 27.74 -169.99 -4.71 14.19 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 17 C 0.54 7.83 6.63 -10.99 -0.07 7.76 16 18 O -0.55 -9.45 16.35 5.56 0.09 -9.36 16 19 N -0.61 -7.77 3.32 -170.53 -0.57 -8.33 16 20 C 0.10 1.19 5.79 -3.07 -0.02 1.17 16 21 C -0.14 -1.32 6.95 -24.91 -0.17 -1.50 16 22 C -0.13 -1.20 7.08 -24.59 -0.17 -1.38 16 23 C 0.10 1.13 6.89 -2.53 -0.02 1.12 16 24 H 0.07 0.72 6.50 -51.93 -0.34 0.38 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.77 6.68 -51.93 -0.35 0.42 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 29 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 30 H 0.35 5.51 8.18 -39.29 -0.32 5.19 16 31 H 0.05 0.72 6.23 -51.93 -0.32 0.40 16 32 H 0.09 1.23 6.42 -51.93 -0.33 0.90 16 33 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.11 1.65 6.07 -51.93 -0.32 1.33 16 36 H 0.06 0.76 6.80 -51.93 -0.35 0.41 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -32.03 332.04 -6.20 -38.23 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.24 Total: 13.81 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.30 Total: 7.92 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.13 Total: -55.79 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.03 -6.20 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796591182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.359 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds