Wall clock time and date at job start Tue Mar 31 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47102 * 2 1 4 4 N 1.46901 * 109.47285 * 119.99665 * 2 1 3 5 5 C 1.46899 * 111.00027 * 295.65140 * 4 2 1 6 6 C 1.50704 * 109.46931 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00088 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99432 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99652 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00213 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99816 * 179.97438 * 9 8 6 12 12 N 1.31420 * 119.99738 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00462 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47223 * 89.99480 * 13 11 9 15 15 H 1.48500 * 109.47538 * 210.00078 * 13 11 9 16 16 H 1.48500 * 109.47103 * 330.00030 * 13 11 9 17 17 C 1.50698 * 109.47438 * 240.00204 * 2 1 3 18 18 O 1.21278 * 120.00314 * 97.96358 * 17 2 1 19 19 N 1.34779 * 119.99598 * 277.96653 * 17 2 1 20 20 C 1.47028 * 125.64911 * 4.79833 * 19 17 2 21 21 C 1.54311 * 107.27193 * 180.97242 * 20 19 17 22 22 C 1.55153 * 102.86788 * 22.52361 * 21 20 19 23 23 C 1.47424 * 125.64726 * 185.10844 * 19 17 2 24 24 H 1.09001 * 109.47161 * 300.00009 * 1 2 3 25 25 H 1.09002 * 109.46600 * 60.00226 * 1 2 3 26 26 H 1.08994 * 109.46767 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47040 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46704 * 299.99924 * 3 2 1 29 29 H 1.09001 * 109.47120 * 59.99966 * 3 2 1 30 30 H 1.00900 * 111.00333 * 171.69557 * 4 2 1 31 31 H 1.09001 * 109.47193 * 299.99631 * 5 4 2 32 32 H 1.08998 * 109.47361 * 59.99416 * 5 4 2 33 33 H 0.96996 * 120.00810 * 0.02562 * 8 6 5 34 34 H 0.96993 * 119.99850 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.88135 * 300.51274 * 20 19 17 36 36 H 1.08996 * 109.88097 * 61.67977 * 20 19 17 37 37 H 1.09011 * 110.92412 * 264.10814 * 21 20 19 38 38 H 1.08995 * 110.59047 * 140.79217 * 21 20 19 39 39 H 1.08996 * 111.00422 * 206.22937 * 22 21 20 40 40 H 1.08997 * 111.00159 * 82.38081 * 22 21 20 41 41 H 1.08993 * 110.36912 * 274.67170 * 23 19 17 42 42 H 1.08999 * 110.36567 * 36.88841 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.6355 0.0312 2.4188 6 6 2.1536 -0.7078 3.6257 7 8 2.7815 -1.7357 3.4840 8 7 1.9200 -0.2257 4.8624 9 6 2.3908 -0.8982 5.9605 10 1 2.9493 -1.8140 5.8344 11 6 2.1505 -0.4010 7.2355 12 7 2.6014 -1.0459 8.2881 13 14 1.1852 1.1833 7.4537 14 1 -0.2613 0.8692 7.5731 15 1 1.6443 1.8774 8.6836 16 1 1.4052 2.0628 6.2776 17 6 2.0324 -0.7103 -1.2304 18 8 2.3718 -0.0711 -2.2036 19 7 2.1045 -2.0561 -1.2494 20 6 1.6355 -2.9544 -0.1841 21 6 1.9460 -4.3979 -0.6324 22 6 3.0886 -4.2014 -1.6634 23 6 2.6726 -2.8708 -2.3388 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.0190 -0.8254 1.1576 31 1 2.0618 1.0341 2.3957 32 1 0.5490 0.0994 2.4737 33 1 1.4181 0.5965 4.9758 34 1 2.4333 -0.6990 9.1781 35 1 2.1594 -2.7322 0.7455 36 1 0.5612 -2.8345 -0.0444 37 1 1.0757 -4.8549 -1.1036 38 1 2.2873 -4.9966 0.2121 39 1 3.1074 -5.0172 -2.3861 40 1 4.0524 -4.1015 -1.1642 41 1 1.9213 -3.0540 -3.1069 42 1 3.5418 -2.3744 -2.7701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796591182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:33 Heat of formation + Delta-G solvation = -80.472282 kcal Electronic energy + Delta-G solvation = -23322.654587 eV Core-core repulsion = 19916.071927 eV Total energy + Delta-G solvation = -3406.582661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56320 -40.20708 -38.57454 -37.66806 -35.93200 -33.71783 -32.63014 -32.05349 -29.91025 -28.50763 -28.13827 -26.24111 -24.98124 -22.44501 -21.90018 -21.16042 -20.21837 -19.90233 -18.55895 -17.50499 -17.25901 -17.09357 -16.55257 -16.23445 -15.87203 -15.38461 -15.14891 -14.86128 -14.60181 -14.48645 -14.26216 -14.09192 -13.90366 -13.72189 -13.65128 -13.16694 -12.97829 -12.89118 -12.76455 -12.49040 -12.37479 -12.27047 -12.11100 -11.99498 -11.95623 -11.52597 -11.47120 -10.82827 -10.39329 -10.20768 -9.68528 -9.31279 -8.37982 -5.98301 1.32970 1.38206 1.45505 1.47292 1.99915 2.03394 2.25804 2.65490 3.18612 3.28794 3.40012 3.76352 3.79474 3.95738 4.03181 4.10687 4.16548 4.39490 4.41237 4.50599 4.55221 4.64543 4.69003 4.74401 4.83340 4.86470 4.96368 5.04941 5.07871 5.15103 5.21058 5.26156 5.34655 5.53636 5.54717 5.78558 5.99594 6.11584 6.51047 6.62630 6.92041 7.09391 7.43910 7.99883 8.79540 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.004309 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.852058 B = 6496.411346 C = 7347.086933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.100 3.900 3 C -0.166 4.166 4 N -0.654 5.654 5 C 0.054 3.946 6 C 0.453 3.547 7 O -0.608 6.608 8 N -0.591 5.591 9 C -0.324 4.324 10 H 0.057 0.943 11 C -0.015 4.015 12 N -0.936 5.936 13 Si 0.962 3.038 14 H -0.257 1.257 15 H -0.279 1.279 16 H -0.230 1.230 17 C 0.535 3.465 18 O -0.583 6.583 19 N -0.606 5.606 20 C 0.100 3.900 21 C -0.132 4.132 22 C -0.124 4.124 23 C 0.097 3.903 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.343 0.657 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.389 0.611 34 H 0.278 0.722 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 2.245 -18.606 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 C -0.225 4.225 4 N -0.287 5.287 5 C -0.077 4.077 6 C 0.241 3.759 7 O -0.492 6.492 8 N -0.233 5.233 9 C -0.454 4.454 10 H 0.075 0.925 11 C -0.213 4.213 12 N -0.577 5.577 13 Si 0.783 3.217 14 H -0.181 1.181 15 H -0.205 1.205 16 H -0.154 1.154 17 C 0.324 3.676 18 O -0.463 6.463 19 N -0.338 5.338 20 C -0.022 4.022 21 C -0.170 4.170 22 C -0.162 4.162 23 C -0.025 4.025 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.162 0.838 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.225 0.775 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.813 1.492 -18.972 20.214 hybrid contribution 0.562 1.241 0.732 1.546 sum -6.251 2.733 -18.240 19.474 Atomic orbital electron populations 1.21858 0.89994 1.03547 1.03818 1.21140 0.98551 0.92554 0.87132 1.22333 1.01014 0.95157 1.03981 1.60557 1.20003 1.48569 0.99551 1.21801 1.03372 0.95697 0.86870 1.20809 0.83530 0.86884 0.84662 1.90545 1.45021 1.27327 1.86350 1.42010 1.51445 1.24638 1.05235 1.18994 1.33658 1.07785 0.84926 0.92473 1.26078 0.98596 1.02725 0.93934 1.69806 1.46879 1.41809 0.99180 0.85399 0.78989 0.77637 0.79719 1.18122 1.20452 1.15371 1.20416 0.77166 0.81109 0.88945 1.90658 1.51642 1.66291 1.37750 1.48568 1.59309 1.04961 1.20941 1.22375 1.00112 0.88601 0.91106 1.22705 0.99381 0.95224 0.99692 1.22752 0.98547 0.96173 0.98685 1.22377 0.98251 0.91624 0.90224 0.89329 0.91137 0.91454 0.93487 0.91034 0.89255 0.83798 0.90176 0.85838 0.77532 0.91272 0.89538 0.91321 0.89335 0.90017 0.87507 0.91353 0.90651 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.32 71.98 0.60 -1.94 16 2 C 0.10 2.35 0.61 2.78 0.00 2.35 16 3 C -0.17 -3.61 7.59 71.98 0.55 -3.07 16 4 N -0.65 -17.66 2.74 -477.85 -1.31 -18.97 16 5 C 0.05 1.48 5.36 85.56 0.46 1.94 16 6 C 0.45 18.89 7.82 87.66 0.69 19.58 16 7 O -0.61 -31.20 15.78 -3.05 -0.05 -31.24 16 8 N -0.59 -26.33 5.09 -306.98 -1.56 -27.89 16 9 C -0.32 -18.33 10.16 84.04 0.85 -17.47 16 10 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 11 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 12 N -0.94 -55.45 13.96 21.66 0.30 -55.15 16 13 Si 0.96 37.60 27.74 68.60 1.90 39.51 16 14 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 15 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 16 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 17 C 0.54 15.02 6.63 87.66 0.58 15.60 16 18 O -0.58 -19.83 16.35 -3.02 -0.05 -19.88 16 19 N -0.61 -15.10 3.32 -811.83 -2.70 -17.80 16 20 C 0.10 2.34 5.79 86.72 0.50 2.85 16 21 C -0.13 -2.39 6.95 31.78 0.22 -2.17 16 22 C -0.12 -2.06 7.08 31.98 0.23 -1.83 16 23 C 0.10 2.03 6.89 86.85 0.60 2.63 16 24 H 0.09 1.37 6.50 -2.39 -0.02 1.36 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.31 6.68 -2.39 -0.02 1.29 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.58 7.88 -2.39 -0.02 1.56 16 29 H 0.09 1.56 6.34 -2.39 -0.02 1.55 16 30 H 0.34 10.63 8.18 -89.69 -0.73 9.90 16 31 H 0.08 1.84 6.23 -2.39 -0.01 1.83 16 32 H 0.12 2.71 6.42 -2.39 -0.02 2.69 16 33 H 0.39 14.25 5.76 -92.71 -0.53 13.72 16 34 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.09 2.55 6.07 -2.39 -0.01 2.53 16 36 H 0.07 1.54 6.80 -2.39 -0.02 1.52 16 37 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 Total: -1.00 -74.67 332.04 2.00 -72.67 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.28 Total: 40.61 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 5.74 Total: 18.14 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -5.26 Total: -119.80 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 1.90 Total: 39.51 kcal Total: -74.67 2.00 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796591182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.803 kcal (2) G-P(sol) polarization free energy of solvation -74.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds