Wall clock time and date at job start Tue Mar 31 2020 02:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47262 * 2 1 4 4 C 1.53003 * 109.47006 * 120.00037 * 2 1 3 5 5 H 1.08998 * 109.47093 * 296.31448 * 4 2 1 6 6 N 1.46501 * 109.46912 * 176.31570 * 4 2 1 7 7 C 1.34777 * 119.99951 * 85.00080 * 6 4 2 8 8 O 1.21287 * 120.00105 * 359.97438 * 7 6 4 9 9 C 1.50702 * 109.47073 * 56.31674 * 4 2 1 10 10 O 1.21283 * 119.99811 * 89.69685 * 9 4 2 11 11 N 1.34772 * 119.99683 * 269.69514 * 9 4 2 12 12 C 1.46966 * 120.59154 * 184.70742 * 11 9 4 13 13 C 1.53370 * 108.63723 * 124.75430 * 12 11 9 14 14 N 1.46963 * 108.63302 * 49.42319 * 13 12 11 15 15 C 1.36936 * 120.59332 * 124.75772 * 14 13 12 16 16 H 1.08004 * 119.99578 * 209.54912 * 15 14 13 17 17 C 1.38809 * 120.00138 * 29.54411 * 15 14 13 18 18 N 1.31617 * 119.99986 * 12.19317 * 17 15 14 19 19 Si 1.86800 * 120.00083 * 192.19295 * 17 15 14 20 20 H 1.48507 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47033 * 120.00005 * 19 17 15 22 22 H 1.48495 * 109.47536 * 240.00019 * 19 17 15 23 23 C 1.46966 * 118.81246 * 304.77560 * 14 13 12 24 24 C 1.46963 * 120.59599 * 4.68781 * 11 9 4 25 25 H 1.08998 * 109.47191 * 298.33779 * 1 2 3 26 26 H 1.09001 * 109.47067 * 58.34178 * 1 2 3 27 27 H 1.09000 * 109.47008 * 178.34027 * 1 2 3 28 28 H 1.09002 * 109.47082 * 239.99686 * 2 1 3 29 29 H 1.08998 * 109.47644 * 179.97438 * 3 2 1 30 30 H 1.09010 * 109.47245 * 300.00190 * 3 2 1 31 31 H 1.09002 * 109.47328 * 59.99837 * 3 2 1 32 32 H 0.97000 * 119.99884 * 264.99553 * 6 4 2 33 33 H 1.07997 * 120.00042 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.60761 * 5.00743 * 12 11 9 35 35 H 1.09004 * 109.60733 * 244.50045 * 12 11 9 36 36 H 1.08994 * 109.61110 * 169.16880 * 13 12 11 37 37 H 1.09003 * 109.60720 * 289.50882 * 13 12 11 38 38 H 0.97002 * 119.99843 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.60761 * 174.97330 * 23 14 13 40 40 H 1.09004 * 109.60733 * 295.48028 * 23 14 13 41 41 H 1.09001 * 109.60777 * 115.50322 * 24 11 9 42 42 H 1.08993 * 109.75007 * 355.07550 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7316 -0.1707 2.1380 6 7 3.5023 -0.7986 1.2057 7 6 4.2453 0.2321 1.6551 8 8 3.7033 1.2239 2.0952 9 6 1.4645 -2.1133 1.2957 10 8 2.0542 -3.0313 0.7661 11 7 0.2945 -2.3380 1.9258 12 6 -0.2277 -3.7043 2.0686 13 6 -0.4829 -3.9786 3.5558 14 7 -1.2591 -2.8619 4.1128 15 6 -2.4478 -3.0903 4.7531 16 1 -3.2224 -2.3378 4.7381 17 6 -2.6573 -4.2889 5.4211 18 7 -1.6469 -5.1015 5.6473 19 14 -4.3731 -4.7486 5.9991 20 1 -5.3265 -3.6736 5.6237 21 1 -4.7867 -6.0226 5.3577 22 1 -4.3703 -4.9154 7.4746 23 6 -0.7368 -1.4956 3.9701 24 6 -0.4817 -1.2213 2.4828 25 1 -0.3633 0.4878 0.9045 26 1 -0.3633 0.5394 -0.8748 27 1 -0.3633 -1.0272 -0.0298 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9357 -1.5917 0.8535 33 1 5.3233 0.1750 1.6234 34 1 0.5025 -4.4170 1.6852 35 1 -1.1612 -3.7990 1.5137 36 1 -1.0454 -4.9057 3.6656 37 1 0.4687 -4.0637 4.0806 38 1 -1.7932 -5.9389 6.1144 39 1 -1.4671 -0.7829 4.3535 40 1 0.1966 -1.4009 4.5250 41 1 -1.4332 -1.1392 1.9575 42 1 0.0782 -0.2926 2.3728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859487526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:08 Heat of formation + Delta-G solvation = -36.323767 kcal Electronic energy + Delta-G solvation = -23989.060238 eV Core-core repulsion = 20584.392000 eV Total energy + Delta-G solvation = -3404.668237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68584 -38.97614 -36.94969 -35.99400 -34.08851 -33.24575 -31.23486 -30.52363 -27.98827 -27.12747 -26.52467 -23.70527 -22.96660 -21.88432 -21.15610 -20.09607 -19.10687 -17.98833 -16.94788 -16.46960 -15.95285 -15.69439 -15.26853 -14.84236 -14.53438 -14.25939 -13.78104 -13.62639 -13.52792 -13.36221 -12.98175 -12.78704 -12.57812 -12.48665 -12.18665 -11.72187 -11.48969 -11.22513 -11.09889 -10.95435 -10.73998 -10.68620 -10.58107 -10.26015 -10.04876 -9.97638 -9.90387 -9.47449 -9.07286 -8.63850 -8.33447 -6.73343 -5.87270 -3.36341 2.57448 2.75094 3.07212 3.31660 3.39574 3.41263 3.54242 4.39467 4.53296 4.73030 4.81280 4.90674 5.14800 5.23619 5.30787 5.35180 5.56443 5.63630 5.66307 5.71851 5.80674 5.85237 5.90127 6.00600 6.05131 6.20782 6.26511 6.26957 6.32909 6.37421 6.45497 6.65422 6.79617 7.20654 7.38598 7.54323 7.68438 7.77057 8.08699 8.34222 8.37155 9.09500 9.70770 10.27405 11.19681 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028710 B = 0.004438 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.040110 B = 6307.073542 C = 6416.967234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 C -0.136 4.136 4 C 0.123 3.877 5 H 0.110 0.890 6 N -0.718 5.718 7 C 0.491 3.509 8 O -0.550 6.550 9 C 0.509 3.491 10 O -0.556 6.556 11 N -0.587 5.587 12 C 0.086 3.914 13 C 0.157 3.843 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.904 5.904 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.128 3.872 24 C 0.080 3.920 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.022 0.978 38 H 0.255 0.745 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.752 9.158 -10.864 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.116 4.116 3 C -0.193 4.193 4 C 0.015 3.985 5 H 0.128 0.872 6 N -0.373 5.373 7 C 0.260 3.740 8 O -0.426 6.426 9 C 0.296 3.704 10 O -0.435 6.435 11 N -0.318 5.318 12 C -0.037 4.037 13 C 0.031 3.969 14 N -0.313 5.313 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.549 5.549 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.000 4.000 24 C -0.044 4.044 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.646 9.228 -10.685 16.056 hybrid contribution -0.624 -0.768 0.243 1.020 sum 7.021 8.460 -10.442 15.162 Atomic orbital electron populations 1.22232 0.94204 1.02674 1.02715 1.21409 0.96464 0.96987 0.96715 1.21862 1.01259 0.94479 1.01681 1.21030 0.81889 0.94441 1.01152 0.87193 1.46385 1.05875 1.21065 1.64024 1.22608 0.93059 0.81950 0.76416 1.90727 1.75242 1.31520 1.45083 1.20395 0.81435 0.90014 0.78555 1.90637 1.60642 1.45416 1.46813 1.48056 1.20476 1.09342 1.53914 1.22596 0.98113 0.81394 1.01612 1.21252 0.95435 0.93846 0.86382 1.43979 1.22757 0.99963 1.64648 1.19254 0.90645 1.02351 1.26224 0.91402 1.25144 0.97493 0.99083 0.97768 1.69962 1.28954 1.12164 1.43772 0.86158 0.83817 0.78214 0.78168 1.20186 1.21487 1.21608 1.21334 0.97650 0.89391 0.91588 1.22769 0.95598 0.88223 0.97804 0.91317 0.92148 0.91902 0.90668 0.92590 0.93212 0.91772 0.75369 0.85091 0.90158 0.92017 0.87657 0.96005 0.93451 0.91345 0.95881 0.91002 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 7.41 37.16 0.28 -1.53 16 2 C -0.10 -1.12 2.70 -90.62 -0.24 -1.36 16 3 C -0.14 -1.51 7.77 37.16 0.29 -1.22 16 4 C 0.12 1.65 1.81 -69.08 -0.12 1.52 16 5 H 0.11 1.59 5.62 -51.93 -0.29 1.29 16 6 N -0.72 -8.16 5.00 -59.27 -0.30 -8.45 16 7 C 0.49 5.17 11.15 54.06 0.60 5.78 16 8 O -0.55 -7.90 14.30 5.55 0.08 -7.82 16 9 C 0.51 8.36 5.96 -10.99 -0.07 8.30 16 10 O -0.56 -10.37 15.53 5.55 0.09 -10.28 16 11 N -0.59 -10.16 2.47 -172.49 -0.43 -10.58 16 12 C 0.09 1.67 6.58 -3.60 -0.02 1.65 16 13 C 0.16 3.67 5.48 -3.60 -0.02 3.65 16 14 N -0.59 -14.12 2.97 -172.04 -0.51 -14.63 16 15 C -0.26 -6.68 9.59 -15.06 -0.14 -6.82 16 16 H 0.07 1.73 7.86 -52.48 -0.41 1.32 16 17 C 0.00 0.10 5.03 -17.43 -0.09 0.01 16 18 N -0.90 -25.48 10.96 55.49 0.61 -24.87 16 19 Si 0.91 21.00 29.57 -169.99 -5.03 15.98 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.13 2.50 6.67 -3.60 -0.02 2.48 16 24 C 0.08 1.28 4.14 -3.60 -0.01 1.26 16 25 H 0.07 0.74 5.80 -51.93 -0.30 0.44 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.64 5.67 -51.93 -0.29 0.35 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.78 7.77 -51.93 -0.40 0.38 16 32 H 0.41 4.28 7.96 -40.82 -0.33 3.95 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.08 1.56 7.02 -51.93 -0.36 1.20 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 2.73 5.91 -51.93 -0.31 2.42 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.11 7.73 -51.93 -0.40 0.71 16 42 H 0.08 1.08 3.75 -51.93 -0.19 0.89 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -31.38 320.85 -6.36 -37.74 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.12 Total: 4.37 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 0.42 Total: 13.71 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.63 Total: -58.53 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.38 -6.36 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859487526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.412 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds