Wall clock time and date at job start Tue Mar 31 2020 02:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47262 * 2 1 4 4 C 1.53003 * 109.47006 * 120.00037 * 2 1 3 5 5 H 1.08998 * 109.47093 * 296.31448 * 4 2 1 6 6 N 1.46501 * 109.46912 * 176.31570 * 4 2 1 7 7 C 1.34777 * 119.99951 * 85.00080 * 6 4 2 8 8 O 1.21287 * 120.00105 * 359.97438 * 7 6 4 9 9 C 1.50702 * 109.47073 * 56.31674 * 4 2 1 10 10 O 1.21283 * 119.99811 * 89.69685 * 9 4 2 11 11 N 1.34772 * 119.99683 * 269.69514 * 9 4 2 12 12 C 1.46966 * 120.59154 * 184.70742 * 11 9 4 13 13 C 1.53370 * 108.63723 * 124.75430 * 12 11 9 14 14 N 1.46963 * 108.63302 * 49.42319 * 13 12 11 15 15 C 1.36936 * 120.59332 * 124.75772 * 14 13 12 16 16 H 1.08004 * 119.99578 * 209.54912 * 15 14 13 17 17 C 1.38809 * 120.00138 * 29.54411 * 15 14 13 18 18 N 1.31617 * 119.99986 * 12.19317 * 17 15 14 19 19 Si 1.86800 * 120.00083 * 192.19295 * 17 15 14 20 20 H 1.48507 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47033 * 120.00005 * 19 17 15 22 22 H 1.48495 * 109.47536 * 240.00019 * 19 17 15 23 23 C 1.46966 * 118.81246 * 304.77560 * 14 13 12 24 24 C 1.46963 * 120.59599 * 4.68781 * 11 9 4 25 25 H 1.08998 * 109.47191 * 298.33779 * 1 2 3 26 26 H 1.09001 * 109.47067 * 58.34178 * 1 2 3 27 27 H 1.09000 * 109.47008 * 178.34027 * 1 2 3 28 28 H 1.09002 * 109.47082 * 239.99686 * 2 1 3 29 29 H 1.08998 * 109.47644 * 179.97438 * 3 2 1 30 30 H 1.09010 * 109.47245 * 300.00190 * 3 2 1 31 31 H 1.09002 * 109.47328 * 59.99837 * 3 2 1 32 32 H 0.97000 * 119.99884 * 264.99553 * 6 4 2 33 33 H 1.07997 * 120.00042 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.60761 * 5.00743 * 12 11 9 35 35 H 1.09004 * 109.60733 * 244.50045 * 12 11 9 36 36 H 1.08994 * 109.61110 * 169.16880 * 13 12 11 37 37 H 1.09003 * 109.60720 * 289.50882 * 13 12 11 38 38 H 0.97002 * 119.99843 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.60761 * 174.97330 * 23 14 13 40 40 H 1.09004 * 109.60733 * 295.48028 * 23 14 13 41 41 H 1.09001 * 109.60777 * 115.50322 * 24 11 9 42 42 H 1.08993 * 109.75007 * 355.07550 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7316 -0.1707 2.1380 6 7 3.5023 -0.7986 1.2057 7 6 4.2453 0.2321 1.6551 8 8 3.7033 1.2239 2.0952 9 6 1.4645 -2.1133 1.2957 10 8 2.0542 -3.0313 0.7661 11 7 0.2945 -2.3380 1.9258 12 6 -0.2277 -3.7043 2.0686 13 6 -0.4829 -3.9786 3.5558 14 7 -1.2591 -2.8619 4.1128 15 6 -2.4478 -3.0903 4.7531 16 1 -3.2224 -2.3378 4.7381 17 6 -2.6573 -4.2889 5.4211 18 7 -1.6469 -5.1015 5.6473 19 14 -4.3731 -4.7486 5.9991 20 1 -5.3265 -3.6736 5.6237 21 1 -4.7867 -6.0226 5.3577 22 1 -4.3703 -4.9154 7.4746 23 6 -0.7368 -1.4956 3.9701 24 6 -0.4817 -1.2213 2.4828 25 1 -0.3633 0.4878 0.9045 26 1 -0.3633 0.5394 -0.8748 27 1 -0.3633 -1.0272 -0.0298 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9357 -1.5917 0.8535 33 1 5.3233 0.1750 1.6234 34 1 0.5025 -4.4170 1.6852 35 1 -1.1612 -3.7990 1.5137 36 1 -1.0454 -4.9057 3.6656 37 1 0.4687 -4.0637 4.0806 38 1 -1.7932 -5.9389 6.1144 39 1 -1.4671 -0.7829 4.3535 40 1 0.1966 -1.4009 4.5250 41 1 -1.4332 -1.1392 1.9575 42 1 0.0782 -0.2926 2.3728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859487526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:08 Heat of formation + Delta-G solvation = -58.245283 kcal Electronic energy + Delta-G solvation = -23990.010826 eV Core-core repulsion = 20584.392000 eV Total energy + Delta-G solvation = -3405.618826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88913 -40.09285 -38.51998 -37.06681 -35.72108 -34.25682 -33.07385 -32.13193 -29.34566 -28.16115 -27.92755 -25.44395 -24.53158 -22.87156 -22.46834 -21.37942 -20.35631 -19.36544 -18.36309 -17.85057 -17.18510 -16.84634 -16.71343 -16.54008 -15.73040 -15.49045 -15.26317 -15.17417 -15.05545 -14.89917 -14.13223 -14.02923 -13.72143 -13.65694 -13.43123 -13.14265 -12.89868 -12.66653 -12.49559 -12.44442 -12.28263 -12.05210 -12.01839 -11.91080 -11.73119 -11.60005 -10.90334 -10.80918 -10.63252 -10.07776 -9.86867 -8.65834 -7.88360 -5.40897 1.39098 1.48017 1.49891 1.59811 1.78908 1.86933 2.48569 2.52144 3.27671 3.29844 3.53982 3.77286 3.84769 4.11089 4.19665 4.21934 4.25402 4.36071 4.44050 4.48142 4.61267 4.65327 4.77084 4.79880 4.81308 4.96420 4.98564 5.02846 5.14135 5.20840 5.30114 5.37236 5.43094 5.47590 5.60401 5.66404 6.35817 6.39463 6.54035 7.00163 7.09605 7.25664 7.77264 8.30499 9.16478 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028710 B = 0.004438 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.040110 B = 6307.073542 C = 6416.967234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.089 4.089 3 C -0.127 4.127 4 C 0.130 3.870 5 H 0.102 0.898 6 N -0.718 5.718 7 C 0.493 3.507 8 O -0.588 6.588 9 C 0.511 3.489 10 O -0.578 6.578 11 N -0.592 5.592 12 C 0.103 3.897 13 C 0.168 3.832 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.076 0.924 17 C -0.050 4.050 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.263 1.263 21 H -0.291 1.291 22 H -0.295 1.295 23 C 0.123 3.877 24 C 0.095 3.905 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.415 0.585 33 H 0.186 0.814 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.076 0.924 37 H -0.009 1.009 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.011 0.989 41 H 0.084 0.916 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 10.964 -12.202 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.109 4.109 3 C -0.184 4.184 4 C 0.021 3.979 5 H 0.120 0.880 6 N -0.374 5.374 7 C 0.263 3.737 8 O -0.465 6.465 9 C 0.299 3.701 10 O -0.459 6.459 11 N -0.323 5.323 12 C -0.022 4.022 13 C 0.042 3.958 14 N -0.331 5.331 15 C -0.390 4.390 16 H 0.093 0.907 17 C -0.245 4.245 18 N -0.585 5.585 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.218 1.218 22 H -0.222 1.222 23 C -0.003 4.003 24 C -0.029 4.029 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.253 0.747 33 H 0.201 0.799 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.009 0.991 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.029 0.971 41 H 0.102 0.898 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.683 11.070 -12.049 18.076 hybrid contribution -0.549 -1.297 0.661 1.556 sum 7.133 9.773 -11.388 16.616 Atomic orbital electron populations 1.22219 0.93733 1.01902 1.03853 1.21382 0.96811 0.97140 0.95596 1.21771 1.00965 0.93791 1.01905 1.20945 0.83321 0.91930 1.01752 0.88020 1.46500 1.04960 1.21761 1.64163 1.23557 0.94702 0.80669 0.74732 1.90720 1.76165 1.32950 1.46713 1.20945 0.80556 0.91124 0.77482 1.90624 1.61020 1.46561 1.47655 1.48074 1.21168 1.08643 1.54445 1.22175 0.98491 0.82984 0.98501 1.20946 0.93285 0.92993 0.88624 1.44214 1.22529 1.01568 1.64777 1.19622 0.91641 1.02369 1.25398 0.90665 1.25894 1.00756 0.99331 0.98520 1.70133 1.30884 1.12436 1.45074 0.85151 0.80041 0.77900 0.76992 1.18681 1.21796 1.22214 1.21520 0.97181 0.87449 0.94196 1.22718 0.96574 0.88731 0.94856 0.90855 0.90380 0.93539 0.90654 0.92966 0.91581 0.92856 0.74720 0.79859 0.90374 0.91385 0.90598 0.99125 0.94033 0.90153 0.97111 0.89781 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 7.41 71.98 0.53 -2.62 16 2 C -0.09 -1.87 2.70 -10.79 -0.03 -1.90 16 3 C -0.13 -2.49 7.77 71.98 0.56 -1.93 16 4 C 0.13 3.23 1.81 44.25 0.08 3.31 16 5 H 0.10 2.74 5.62 -2.39 -0.01 2.73 16 6 N -0.72 -14.83 5.00 -459.81 -2.30 -17.13 16 7 C 0.49 9.08 11.15 129.79 1.45 10.53 16 8 O -0.59 -15.70 14.30 -3.05 -0.04 -15.74 16 9 C 0.51 16.19 5.96 87.66 0.52 16.71 16 10 O -0.58 -21.09 15.53 -3.04 -0.05 -21.14 16 11 N -0.59 -20.01 2.47 -818.02 -2.02 -22.04 16 12 C 0.10 4.01 6.58 86.41 0.57 4.58 16 13 C 0.17 8.10 5.48 86.42 0.47 8.57 16 14 N -0.61 -29.29 2.97 -698.20 -2.07 -31.36 16 15 C -0.26 -13.64 9.59 84.03 0.81 -12.83 16 16 H 0.08 3.76 7.86 -2.91 -0.02 3.74 16 17 C -0.05 -2.70 5.03 84.86 0.43 -2.27 16 18 N -0.94 -54.55 10.96 21.65 0.24 -54.32 16 19 Si 0.97 43.52 29.57 68.60 2.03 45.55 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 C 0.12 4.73 6.67 86.41 0.58 5.31 16 24 C 0.09 2.85 4.14 86.42 0.36 3.21 16 25 H 0.07 1.37 5.80 -2.39 -0.01 1.35 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.09 6.18 -2.39 -0.01 1.07 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.07 5.67 -2.39 -0.01 1.05 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.05 1.17 7.77 -2.39 -0.02 1.16 16 32 H 0.42 7.85 7.96 -92.71 -0.74 7.11 16 33 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.08 3.08 7.02 -2.39 -0.02 3.06 16 35 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.08 4.11 5.91 -2.39 -0.01 4.09 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 40 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.08 2.38 7.73 -2.39 -0.02 2.36 16 42 H 0.11 2.69 3.75 -2.39 -0.01 2.68 16 Total: -1.00 -68.83 320.85 2.40 -66.43 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.30 Total: 19.07 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 6.32 Total: 30.67 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -6.16 Total: -124.84 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.09 Total: -36.88 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -68.83 2.40 -66.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859487526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.184 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds