Wall clock time and date at job start Tue Mar 31 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99954 * 2 1 4 4 H 1.09008 * 109.46913 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47356 * 119.99945 * 3 2 1 6 6 O 1.42895 * 109.47023 * 240.00091 * 3 2 1 7 7 N 1.41604 * 114.00171 * 154.99674 * 6 3 2 8 8 C 1.34774 * 120.00011 * 180.27101 * 7 6 3 9 9 O 1.21588 * 119.99964 * 354.74709 * 8 7 6 10 10 N 1.34777 * 120.00071 * 174.73898 * 8 7 6 11 11 C 1.47075 * 120.88228 * 184.71796 * 10 8 7 12 12 C 1.53696 * 108.27743 * 128.75832 * 11 10 8 13 13 N 1.46907 * 109.25715 * 54.08217 * 12 11 10 14 14 C 1.46893 * 111.00111 * 172.61246 * 13 12 11 15 15 C 1.50705 * 109.47000 * 294.30190 * 14 13 12 16 16 H 1.07999 * 119.99895 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00035 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99617 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46996 * 119.99933 * 19 17 15 22 22 H 1.48506 * 109.46901 * 239.99984 * 19 17 15 23 23 C 1.46906 * 111.26792 * 296.76259 * 13 12 11 24 24 C 1.47079 * 120.87849 * 5.00196 * 10 8 7 25 25 H 1.08000 * 120.00178 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00101 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00101 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47338 * 180.02562 * 5 3 2 29 29 H 1.09008 * 109.47107 * 299.99578 * 5 3 2 30 30 H 1.08993 * 109.47316 * 59.99620 * 5 3 2 31 31 H 0.96995 * 119.99912 * 0.02562 * 7 6 3 32 32 H 1.08995 * 109.63517 * 248.52641 * 11 10 8 33 33 H 1.08998 * 109.62944 * 9.10924 * 11 10 8 34 34 H 1.09002 * 109.64610 * 294.08260 * 12 11 10 35 35 H 1.08998 * 109.42744 * 173.94944 * 12 11 10 36 36 H 1.09000 * 109.47498 * 54.30216 * 14 13 12 37 37 H 1.08999 * 109.46968 * 174.30711 * 14 13 12 38 38 H 0.97007 * 119.99556 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.48736 * 303.13882 * 23 13 12 40 40 H 1.08995 * 109.48907 * 183.06478 * 23 13 12 41 41 H 1.08993 * 109.63106 * 350.89867 * 24 10 8 42 42 H 1.09009 * 109.62958 * 111.47623 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 8 2.8850 1.3808 -1.1668 7 7 3.1895 2.7030 -1.5720 8 6 3.9527 2.9147 -2.6625 9 8 4.4584 1.9734 -3.2426 10 7 4.1551 4.1698 -3.1101 11 6 4.8978 4.4166 -4.3553 12 6 4.0536 5.3434 -5.2445 13 7 3.6962 6.5494 -4.4856 14 6 3.0393 7.5395 -5.3493 15 6 4.0192 8.0340 -6.3820 16 1 5.0291 7.6513 -6.3950 17 6 3.6268 8.9757 -7.3095 18 7 2.3975 9.4428 -7.2926 19 14 4.8412 9.5881 -8.5900 20 1 6.1487 8.9117 -8.3955 21 1 4.3235 9.2845 -9.9482 22 1 5.0169 11.0555 -8.4437 23 6 2.8546 6.2203 -3.3274 24 6 3.6444 5.3292 -2.3629 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.4878 2.3304 1.2494 29 1 2.3164 1.3286 2.1392 30 1 3.6513 0.5578 1.2493 31 1 2.8459 3.4564 -1.0668 32 1 5.8506 4.8932 -4.1251 33 1 5.0727 3.4722 -4.8706 34 1 3.1454 4.8264 -5.5546 35 1 4.6307 5.6255 -6.1250 36 1 2.1874 7.0779 -5.8485 37 1 2.6952 8.3782 -4.7441 38 1 2.1213 10.1051 -7.9454 39 1 1.9631 5.6912 -3.6643 40 1 2.5622 7.1384 -2.8177 41 1 2.9904 4.9884 -1.5604 42 1 4.4791 5.8919 -1.9448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875700172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:43 Heat of formation + Delta-G solvation = -2.410463 kcal Electronic energy + Delta-G solvation = -22485.007039 eV Core-core repulsion = 19081.809393 eV Total energy + Delta-G solvation = -3403.197646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41322 -39.47369 -38.66424 -36.03287 -35.49426 -34.42707 -32.98346 -31.77439 -30.68976 -29.69500 -27.18703 -24.77743 -24.21950 -23.97337 -22.48698 -21.36776 -20.35622 -19.67674 -18.70910 -18.38901 -17.17108 -16.88684 -16.57726 -16.16782 -15.94562 -15.71032 -15.49559 -15.30536 -15.05827 -14.79837 -14.47965 -14.25999 -13.99549 -13.56503 -13.16361 -13.10002 -12.84035 -12.74062 -12.58761 -12.37779 -12.32325 -12.16574 -12.10269 -11.91242 -11.74864 -11.40330 -11.19873 -10.60850 -10.58254 -10.17349 -9.63858 -9.03574 -8.19458 -6.28595 0.42755 1.31006 1.43153 1.44484 1.57424 2.00338 2.37670 2.42662 3.13204 3.22186 3.48299 3.72846 3.90497 3.91804 4.03770 4.10145 4.11697 4.26694 4.39592 4.44714 4.54156 4.71937 4.74253 4.76542 4.85313 4.96452 4.97038 5.02989 5.16684 5.18394 5.22803 5.36898 5.54423 5.57913 5.63347 5.67569 5.96488 6.05333 6.26144 6.59480 6.73711 6.87564 7.41268 7.46068 8.91832 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.003047 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.055741 B = 9187.335883 C = 9468.346768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.173 4.173 3 C 0.079 3.921 4 H 0.096 0.904 5 C -0.169 4.169 6 O -0.150 6.150 7 N -0.601 5.601 8 C 0.722 3.278 9 O -0.624 6.624 10 N -0.618 5.618 11 C 0.147 3.853 12 C 0.056 3.944 13 N -0.537 5.537 14 C 0.208 3.792 15 C -0.521 4.521 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.279 1.279 23 C 0.036 3.964 24 C 0.124 3.876 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.418 0.582 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.011 0.989 35 H 0.083 0.917 36 H -0.041 1.041 37 H 0.013 0.987 38 H 0.264 0.736 39 H 0.020 0.980 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -13.217 18.662 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.192 4.192 3 C 0.022 3.978 4 H 0.114 0.886 5 C -0.226 4.226 6 O -0.154 6.154 7 N -0.310 5.310 8 C 0.424 3.576 9 O -0.504 6.504 10 N -0.358 5.358 11 C 0.024 3.976 12 C -0.073 4.073 13 N -0.262 5.262 14 C 0.082 3.918 15 C -0.559 4.559 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.093 4.093 24 C 0.002 3.998 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.029 0.971 35 H 0.101 0.899 36 H -0.024 1.024 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.627 -13.761 18.282 22.940 hybrid contribution -0.888 0.519 -0.860 1.341 sum -2.515 -13.242 17.422 22.027 Atomic orbital electron populations 1.24224 0.95027 1.03815 0.95630 1.22641 0.96111 0.96762 1.03710 1.21981 0.92521 0.98195 0.85101 0.88647 1.22279 1.00383 1.02927 0.97026 1.90633 1.72633 1.04545 1.47552 1.46115 1.56452 0.98462 1.29931 1.15351 0.79101 0.83306 0.79835 1.90880 1.55929 1.42491 1.61055 1.47303 1.58892 1.03260 1.26333 1.21686 0.94268 0.98867 0.82757 1.22393 0.98068 0.89946 0.96920 1.62003 1.43866 1.10767 1.09552 1.19380 0.92050 0.89546 0.90807 1.21515 0.98297 1.22762 1.13360 0.91535 1.25879 0.97061 0.96650 1.00019 1.70086 1.18921 1.31117 1.37434 0.85367 0.79207 0.78063 0.78196 1.18550 1.20827 1.20477 1.22543 0.93958 0.99736 0.93052 1.21952 0.99177 0.85525 0.93174 0.85970 0.87236 0.86501 0.91677 0.89115 0.92312 0.73602 0.89532 0.89578 0.97114 0.89885 1.02372 0.96911 0.92762 0.96199 0.88811 0.87490 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 14.32 67.78 0.97 -0.69 16 2 C -0.17 -2.54 9.15 25.65 0.23 -2.30 16 3 C 0.08 1.26 3.22 29.85 0.10 1.36 16 4 H 0.10 1.14 7.59 -2.38 -0.02 1.12 16 5 C -0.17 -2.13 9.54 71.98 0.69 -1.45 16 6 O -0.15 -3.87 10.74 -21.51 -0.23 -4.10 16 7 N -0.60 -14.61 6.29 -184.75 -1.16 -15.77 16 8 C 0.72 23.16 8.45 179.05 1.51 24.67 16 9 O -0.62 -25.87 16.23 13.29 0.22 -25.65 16 10 N -0.62 -17.94 3.00 -835.07 -2.51 -20.45 16 11 C 0.15 4.73 6.61 86.50 0.57 5.30 16 12 C 0.06 2.14 5.47 86.54 0.47 2.61 16 13 N -0.54 -21.62 4.62 -898.86 -4.15 -25.78 16 14 C 0.21 10.63 4.72 85.56 0.40 11.04 16 15 C -0.52 -28.54 8.41 25.60 0.22 -28.33 16 16 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 17 C 0.00 0.10 5.46 84.66 0.46 0.57 16 18 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 19 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.04 1.12 5.62 86.38 0.49 1.60 16 24 C 0.12 2.81 6.59 86.35 0.57 3.38 16 25 H 0.12 1.00 8.06 -2.91 -0.02 0.97 16 26 H 0.11 0.99 7.83 -2.91 -0.02 0.97 16 27 H 0.12 1.74 8.06 -2.91 -0.02 1.71 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.42 6.74 5.92 -92.71 -0.55 6.19 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.09 2.88 7.09 -2.39 -0.02 2.87 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 3.42 6.67 -2.39 -0.02 3.40 16 36 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 37 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 38 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 39 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 41 H 0.11 1.53 5.63 -2.39 -0.01 1.52 16 42 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -73.85 345.96 1.61 -72.24 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.45 Total: 11.15 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.68 Total: 17.77 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -7.54 Total: -116.96 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.02 Total: -29.75 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -73.85 1.61 -72.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875700172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.829 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds