Wall clock time and date at job start Tue Mar 31 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47097 * 2 1 4 4 H 1.09001 * 109.46695 * 54.99638 * 3 2 1 5 5 C 1.50700 * 109.46871 * 174.99600 * 3 2 1 6 6 H 1.08002 * 119.99612 * 120.00500 * 5 3 2 7 7 C 1.37875 * 120.00190 * 299.99331 * 5 3 2 8 8 N 1.31517 * 120.00096 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00064 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47407 * 90.00245 * 9 7 5 11 11 H 1.48502 * 109.47281 * 210.00600 * 9 7 5 12 12 H 1.48503 * 109.46796 * 330.00340 * 9 7 5 13 13 N 1.46500 * 109.46874 * 294.99778 * 3 2 1 14 14 C 1.34774 * 120.00209 * 85.00274 * 13 3 2 15 15 O 1.21289 * 119.99735 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99942 * 180.02562 * 14 13 3 17 17 N 1.46509 * 109.47014 * 179.97438 * 16 14 13 18 18 C 1.34779 * 119.99795 * 180.02562 * 17 16 14 19 19 O 1.21578 * 120.00186 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99572 * 179.97438 * 18 17 16 21 21 C 1.47024 * 125.64847 * 359.68614 * 20 18 17 22 22 C 1.54327 * 107.26851 * 181.32598 * 21 20 18 23 23 C 1.55154 * 102.94372 * 22.19158 * 22 21 20 24 24 C 1.47426 * 125.64645 * 179.97438 * 20 18 17 25 25 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47622 * 300.00032 * 1 2 3 27 27 H 1.09008 * 109.47216 * 60.00618 * 1 2 3 28 28 H 1.08996 * 109.47622 * 239.99968 * 2 1 3 29 29 H 1.09008 * 109.47216 * 119.99382 * 2 1 3 30 30 H 0.96992 * 119.99983 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99641 * 264.99684 * 13 3 2 32 32 H 1.08999 * 109.47855 * 59.99748 * 16 14 13 33 33 H 1.08995 * 109.46982 * 299.99024 * 16 14 13 34 34 H 0.97004 * 119.99661 * 359.97438 * 17 16 14 35 35 H 1.08997 * 109.88062 * 300.74548 * 21 20 18 36 36 H 1.09000 * 109.88248 * 61.90735 * 21 20 18 37 37 H 1.09005 * 110.71834 * 263.82776 * 22 21 20 38 38 H 1.08999 * 110.71553 * 140.55738 * 22 21 20 39 39 H 1.09000 * 111.00849 * 206.42090 * 23 22 21 40 40 H 1.09001 * 111.00585 * 82.56882 * 23 22 21 41 41 H 1.09004 * 110.36499 * 274.44757 * 24 20 18 42 42 H 1.08998 * 110.36482 * 36.65820 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1431 0.8785 1.2282 8 7 3.4060 0.3369 2.1731 9 14 6.0048 0.8813 1.3821 10 1 6.4415 2.1142 2.0851 11 1 6.4394 -0.3097 2.1553 12 1 6.6134 0.8416 0.0281 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3671 15 8 -0.3397 2.6320 -0.4345 16 6 0.0363 3.3375 -2.6550 17 7 -1.3227 3.8698 -2.5273 18 6 -1.8928 4.5173 -3.5629 19 8 -1.2792 4.6600 -4.6027 20 7 -3.1432 5.0065 -3.4456 21 6 -3.9968 4.8995 -2.2533 22 6 -5.3439 5.5717 -2.5926 23 6 -5.3776 5.5197 -4.1429 24 6 -3.8836 5.7323 -4.4936 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8291 -0.0615 2.9497 31 1 2.2720 2.1231 -1.9978 32 1 0.0673 2.6129 -3.4686 33 1 0.7276 4.1528 -2.8680 34 1 -1.8123 3.7556 -1.6978 35 1 -4.1580 3.8503 -2.0058 36 1 -3.5274 5.4127 -1.4140 37 1 -5.3595 6.6034 -2.2409 38 1 -6.1743 5.0064 -2.1696 39 1 -5.9921 6.3239 -4.5476 40 1 -5.7271 4.5487 -4.4938 41 1 -3.6349 6.7933 -4.4681 42 1 -3.6594 5.3144 -5.4750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:04 Heat of formation + Delta-G solvation = -71.225067 kcal Electronic energy + Delta-G solvation = -22544.693573 eV Core-core repulsion = 19138.511901 eV Total energy + Delta-G solvation = -3406.181671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34219 -39.11716 -37.54605 -35.32521 -34.11665 -32.48423 -31.78233 -30.98555 -29.28619 -27.85472 -26.37632 -23.61526 -22.91875 -21.46407 -20.46902 -19.96818 -19.42568 -18.52429 -16.94637 -16.72917 -16.09212 -15.63491 -15.38264 -15.14923 -14.65024 -14.54283 -13.88274 -13.81227 -13.39859 -13.26644 -12.88426 -12.71597 -12.70013 -12.40250 -11.83694 -11.64449 -11.51270 -11.47103 -11.29252 -11.06710 -11.00601 -10.87461 -10.36017 -10.27849 -10.17545 -9.67980 -9.18592 -9.14406 -9.09197 -8.61231 -8.53817 -7.92447 -6.15951 -4.25480 2.50560 3.15836 3.23021 3.27107 3.30157 3.32177 3.80597 4.13378 4.29749 4.35351 4.40008 4.60912 4.98656 5.09375 5.15608 5.32893 5.37493 5.41953 5.54796 5.55216 5.58985 5.59725 5.68723 5.84400 6.10028 6.34497 6.40363 6.46401 6.60720 6.98900 7.00002 7.13356 7.29638 7.36089 7.56829 7.67460 7.84604 7.95952 8.13191 8.52887 8.61558 8.71290 8.99911 9.41739 10.89384 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.003158 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.829700 B = 8863.654044 C = 9250.118391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.701 5.701 14 C 0.496 3.504 15 O -0.549 6.549 16 C 0.116 3.884 17 N -0.727 5.727 18 C 0.724 3.276 19 O -0.594 6.594 20 N -0.639 5.639 21 C 0.096 3.904 22 C -0.129 4.129 23 C -0.135 4.135 24 C 0.125 3.875 25 H 0.023 0.977 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 8.009 -9.513 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.280 3.720 15 O -0.429 6.429 16 C -0.012 4.012 17 N -0.385 5.385 18 C 0.426 3.574 19 O -0.473 6.473 20 N -0.378 5.378 21 C -0.027 4.027 22 C -0.167 4.167 23 C -0.173 4.173 24 C 0.002 3.998 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.925 7.924 -9.387 19.331 hybrid contribution 1.104 -0.131 0.247 1.139 sum -13.822 7.793 -9.140 18.311 Atomic orbital electron populations 1.21834 0.98373 0.98096 1.01097 1.21944 0.92591 0.99752 1.02430 1.18830 0.94328 0.89193 0.80725 0.93194 1.21232 0.90633 1.39131 1.06376 0.91970 1.24884 0.98679 0.94728 0.95364 1.69889 1.35185 1.37549 1.09347 0.86442 0.84752 0.77646 0.78241 1.20567 1.21069 1.19801 1.46440 1.14230 1.55324 1.18846 1.20244 0.83324 0.79655 0.88729 1.90651 1.51447 1.60413 1.40401 1.20992 0.83635 0.99416 0.97198 1.44773 1.16781 1.60303 1.16687 1.15314 0.79980 0.78432 0.83690 1.90912 1.62804 1.64820 1.28779 1.47521 1.13683 1.60383 1.16240 1.22041 0.91114 1.01180 0.88414 1.22605 0.96378 1.01575 0.96175 1.22812 0.95700 1.02975 0.95789 1.22057 0.89831 0.96208 0.91732 0.95814 0.93152 0.94399 0.94915 0.88197 0.92531 0.77549 0.89114 0.89025 0.75441 0.91354 0.91317 0.90441 0.89893 0.89724 0.90527 0.91725 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.15 0.32 -2.63 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.83 5.02 -54.93 -0.28 -14.10 16 14 C 0.50 9.24 6.47 -10.99 -0.07 9.16 16 15 O -0.55 -11.69 12.80 5.55 0.07 -11.62 16 16 C 0.12 1.78 6.15 -5.19 -0.03 1.74 16 17 N -0.73 -10.94 5.49 -66.41 -0.36 -11.30 16 18 C 0.72 11.21 8.49 -86.91 -0.74 10.47 16 19 O -0.59 -11.05 16.59 5.30 0.09 -10.96 16 20 N -0.64 -7.69 3.33 -176.22 -0.59 -8.28 16 21 C 0.10 0.87 6.15 -3.06 -0.02 0.86 16 22 C -0.13 -0.81 6.95 -24.90 -0.17 -0.99 16 23 C -0.13 -0.86 7.09 -24.57 -0.17 -1.03 16 24 C 0.12 1.19 6.91 -2.52 -0.02 1.17 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 27 H 0.04 0.79 5.65 -51.92 -0.29 0.49 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.63 5.95 -51.92 -0.31 2.32 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.41 6.01 6.42 -40.82 -0.26 5.74 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -31.35 339.43 -8.57 -39.92 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.62 Total: 9.98 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -1.60 Total: 9.56 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.60 Total: -57.33 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.16 Total: -22.59 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.35 -8.57 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.301 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds