Wall clock time and date at job start Tue Mar 31 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47097 * 2 1 4 4 H 1.09001 * 109.46695 * 54.99638 * 3 2 1 5 5 C 1.50700 * 109.46871 * 174.99600 * 3 2 1 6 6 H 1.08002 * 119.99612 * 120.00500 * 5 3 2 7 7 C 1.37875 * 120.00190 * 299.99331 * 5 3 2 8 8 N 1.31517 * 120.00096 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00064 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47407 * 90.00245 * 9 7 5 11 11 H 1.48502 * 109.47281 * 210.00600 * 9 7 5 12 12 H 1.48503 * 109.46796 * 330.00340 * 9 7 5 13 13 N 1.46500 * 109.46874 * 294.99778 * 3 2 1 14 14 C 1.34774 * 120.00209 * 85.00274 * 13 3 2 15 15 O 1.21289 * 119.99735 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99942 * 180.02562 * 14 13 3 17 17 N 1.46509 * 109.47014 * 179.97438 * 16 14 13 18 18 C 1.34779 * 119.99795 * 180.02562 * 17 16 14 19 19 O 1.21578 * 120.00186 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99572 * 179.97438 * 18 17 16 21 21 C 1.47024 * 125.64847 * 359.68614 * 20 18 17 22 22 C 1.54327 * 107.26851 * 181.32598 * 21 20 18 23 23 C 1.55154 * 102.94372 * 22.19158 * 22 21 20 24 24 C 1.47426 * 125.64645 * 179.97438 * 20 18 17 25 25 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47622 * 300.00032 * 1 2 3 27 27 H 1.09008 * 109.47216 * 60.00618 * 1 2 3 28 28 H 1.08996 * 109.47622 * 239.99968 * 2 1 3 29 29 H 1.09008 * 109.47216 * 119.99382 * 2 1 3 30 30 H 0.96992 * 119.99983 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99641 * 264.99684 * 13 3 2 32 32 H 1.08999 * 109.47855 * 59.99748 * 16 14 13 33 33 H 1.08995 * 109.46982 * 299.99024 * 16 14 13 34 34 H 0.97004 * 119.99661 * 359.97438 * 17 16 14 35 35 H 1.08997 * 109.88062 * 300.74548 * 21 20 18 36 36 H 1.09000 * 109.88248 * 61.90735 * 21 20 18 37 37 H 1.09005 * 110.71834 * 263.82776 * 22 21 20 38 38 H 1.08999 * 110.71553 * 140.55738 * 22 21 20 39 39 H 1.09000 * 111.00849 * 206.42090 * 23 22 21 40 40 H 1.09001 * 111.00585 * 82.56882 * 23 22 21 41 41 H 1.09004 * 110.36499 * 274.44757 * 24 20 18 42 42 H 1.08998 * 110.36482 * 36.65820 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1431 0.8785 1.2282 8 7 3.4060 0.3369 2.1731 9 14 6.0048 0.8813 1.3821 10 1 6.4415 2.1142 2.0851 11 1 6.4394 -0.3097 2.1553 12 1 6.6134 0.8416 0.0281 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3671 15 8 -0.3397 2.6320 -0.4345 16 6 0.0363 3.3375 -2.6550 17 7 -1.3227 3.8698 -2.5273 18 6 -1.8928 4.5173 -3.5629 19 8 -1.2792 4.6600 -4.6027 20 7 -3.1432 5.0065 -3.4456 21 6 -3.9968 4.8995 -2.2533 22 6 -5.3439 5.5717 -2.5926 23 6 -5.3776 5.5197 -4.1429 24 6 -3.8836 5.7323 -4.4936 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8291 -0.0615 2.9497 31 1 2.2720 2.1231 -1.9978 32 1 0.0673 2.6129 -3.4686 33 1 0.7276 4.1528 -2.8680 34 1 -1.8123 3.7556 -1.6978 35 1 -4.1580 3.8503 -2.0058 36 1 -3.5274 5.4127 -1.4140 37 1 -5.3595 6.6034 -2.2409 38 1 -6.1743 5.0064 -2.1696 39 1 -5.9921 6.3239 -4.5476 40 1 -5.7271 4.5487 -4.4938 41 1 -3.6349 6.7933 -4.4681 42 1 -3.6594 5.3144 -5.4750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:04 Heat of formation + Delta-G solvation = -93.311940 kcal Electronic energy + Delta-G solvation = -22545.651331 eV Core-core repulsion = 19138.511901 eV Total energy + Delta-G solvation = -3407.139430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49534 -40.58950 -38.50368 -37.07830 -35.45654 -34.34004 -32.99159 -32.45222 -30.05641 -29.41179 -27.95420 -25.03270 -24.30855 -22.26033 -21.95196 -21.21599 -21.02353 -19.68052 -18.58699 -17.74543 -17.39920 -17.08030 -17.04531 -16.53238 -16.18763 -15.79737 -15.35348 -14.66291 -14.52958 -14.46902 -14.28864 -14.08585 -13.87811 -13.56316 -13.35147 -13.17397 -13.11133 -12.88727 -12.68827 -12.20539 -12.16433 -12.13483 -12.06170 -11.58636 -11.57730 -11.45488 -11.05759 -10.80691 -10.52058 -10.37221 -9.68763 -9.55510 -8.16156 -6.32785 1.43193 1.45320 1.47088 1.56302 1.70012 2.02485 2.34926 2.56413 2.99963 3.13810 3.68605 3.71291 3.87803 4.07829 4.30984 4.35132 4.36112 4.49574 4.51429 4.58486 4.64445 4.76495 4.87008 4.93267 5.00278 5.07293 5.12476 5.22310 5.25310 5.30034 5.37462 5.43972 5.54854 5.60576 5.79756 5.90398 5.96996 6.17302 6.74592 6.82862 6.90662 7.31901 7.42061 7.48571 8.89024 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.003158 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.829700 B = 8863.654044 C = 9250.118391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.262 1.262 13 N -0.698 5.698 14 C 0.500 3.500 15 O -0.577 6.577 16 C 0.128 3.872 17 N -0.727 5.727 18 C 0.718 3.282 19 O -0.631 6.631 20 N -0.639 5.639 21 C 0.087 3.913 22 C -0.121 4.121 23 C -0.123 4.123 24 C 0.115 3.885 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.409 0.591 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.695 8.594 -10.621 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.186 1.186 13 N -0.347 5.347 14 C 0.286 3.714 15 O -0.458 6.458 16 C 0.000 4.000 17 N -0.385 5.385 18 C 0.420 3.580 19 O -0.513 6.513 20 N -0.377 5.377 21 C -0.035 4.035 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.008 4.008 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.247 0.753 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.677 8.531 -10.517 20.716 hybrid contribution 1.260 -0.275 0.604 1.424 sum -14.417 8.256 -9.913 19.346 Atomic orbital electron populations 1.21672 0.96800 0.99190 1.00348 1.21798 0.93913 0.99081 1.01362 1.18407 0.93603 0.89229 0.81142 0.97826 1.21591 0.91535 1.38896 1.06677 0.91044 1.25720 1.03079 0.94416 0.95101 1.70032 1.36964 1.38334 1.09852 0.85414 0.79426 0.77373 0.78539 1.20516 1.21019 1.18601 1.46177 1.15164 1.55456 1.17937 1.20715 0.82409 0.78855 0.89469 1.90644 1.52144 1.61214 1.41767 1.20873 0.84178 0.99788 0.95142 1.44742 1.16631 1.60400 1.16767 1.15475 0.80912 0.78523 0.83109 1.90876 1.64100 1.66308 1.29986 1.47688 1.12834 1.59353 1.17857 1.22277 0.92259 1.01622 0.87362 1.22627 0.94945 1.02218 0.96057 1.22800 0.93421 1.04021 0.95845 1.22307 0.91782 0.96075 0.90601 0.93735 0.95211 0.93716 0.94085 0.90977 0.92604 0.75848 0.87640 0.87875 0.75285 0.91451 0.91455 0.89286 0.88077 0.87181 0.90464 0.91164 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.51 71.98 0.61 -4.67 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.68 16 3 C 0.28 13.78 2.24 44.25 0.10 13.88 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.21 16 5 C -0.55 -28.32 8.73 25.60 0.22 -28.10 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -51.23 11.29 21.45 0.24 -50.98 16 9 Si 0.97 41.57 29.54 68.60 2.03 43.60 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 13 N -0.70 -27.32 5.02 -446.09 -2.24 -29.56 16 14 C 0.50 18.40 6.47 87.66 0.57 18.97 16 15 O -0.58 -24.74 12.80 -3.06 -0.04 -24.78 16 16 C 0.13 3.80 6.15 85.63 0.53 4.33 16 17 N -0.73 -21.43 5.49 -482.30 -2.65 -24.08 16 18 C 0.72 21.87 8.49 179.05 1.52 23.39 16 19 O -0.63 -23.29 16.59 -3.96 -0.07 -23.36 16 20 N -0.64 -14.82 3.33 -829.71 -2.76 -17.58 16 21 C 0.09 1.47 6.15 86.73 0.53 2.00 16 22 C -0.12 -1.18 6.95 31.78 0.22 -0.96 16 23 C -0.12 -1.24 7.09 31.99 0.23 -1.02 16 24 C 0.11 2.04 6.91 86.86 0.60 2.65 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.03 1.37 7.85 -2.39 -0.02 1.35 16 27 H 0.04 1.83 5.65 -2.38 -0.01 1.82 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 3.88 5.95 -2.38 -0.01 3.86 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.41 13.51 8.54 -92.71 -0.79 12.72 16 32 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.41 11.90 6.42 -92.71 -0.60 11.30 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 Total: -1.00 -68.41 339.43 -0.09 -68.50 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.36 Total: 32.09 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 5.75 Total: 26.14 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -7.40 Total: -122.19 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.10 Total: -48.14 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.41 -0.09 -68.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.811 kcal (2) G-P(sol) polarization free energy of solvation -68.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds