Wall clock time and date at job start Tue Mar 31 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.66217 * 2 1 4 4 C 1.50441 * 109.57180 * 239.70195 * 2 1 3 5 5 O 1.21279 * 118.48402 * 47.46647 * 4 2 1 6 6 N 1.33377 * 123.02379 * 227.44970 * 4 2 1 7 7 C 1.46498 * 117.70168 * 184.34027 * 6 4 2 8 8 C 1.45678 * 124.60588 * 4.31296 * 6 4 2 9 9 H 1.09006 * 109.24531 * 217.80457 * 8 6 4 10 10 C 1.52994 * 109.20115 * 98.46492 * 8 6 4 11 11 C 1.52985 * 110.75574 * 338.14818 * 8 6 4 12 12 H 1.09002 * 109.71891 * 286.98180 * 11 8 6 13 13 C 1.53001 * 109.71887 * 166.36918 * 11 8 6 14 14 N 1.47054 * 109.56924 * 120.29404 * 2 1 3 15 15 C 1.34775 * 121.35427 * 342.53974 * 14 2 1 16 16 O 1.21596 * 119.99478 * 25.43500 * 15 14 2 17 17 N 1.34771 * 120.00248 * 205.44143 * 15 14 2 18 18 C 1.46500 * 119.99877 * 181.61576 * 17 15 14 19 19 C 1.50709 * 109.46960 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99582 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99396 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00566 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47183 * 89.99598 * 23 21 19 25 25 H 1.48497 * 109.46914 * 209.99782 * 23 21 19 26 26 H 1.48508 * 109.46865 * 329.99772 * 23 21 19 27 27 H 1.09002 * 109.47531 * 309.66735 * 1 2 3 28 28 H 1.08999 * 109.47340 * 69.67152 * 1 2 3 29 29 H 1.08997 * 109.47100 * 189.67170 * 1 2 3 30 30 H 1.08994 * 109.47361 * 359.97438 * 7 6 4 31 31 H 1.09000 * 109.47115 * 120.00062 * 7 6 4 32 32 H 1.09002 * 109.47002 * 239.99401 * 7 6 4 33 33 H 1.09007 * 109.46766 * 298.74499 * 10 8 6 34 34 H 1.08994 * 109.47642 * 58.74336 * 10 8 6 35 35 H 1.08998 * 109.47393 * 178.74897 * 10 8 6 36 36 H 1.08997 * 109.47186 * 273.74987 * 13 11 8 37 37 H 1.09001 * 109.46971 * 33.75272 * 13 11 8 38 38 H 1.08999 * 109.46915 * 153.74607 * 13 11 8 39 39 H 0.96991 * 120.00008 * 1.61215 * 17 15 14 40 40 H 1.09000 * 109.47331 * 299.99662 * 18 17 15 41 41 H 1.09000 * 109.47649 * 59.99853 * 18 17 15 42 42 H 0.97002 * 119.99397 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8967 1.0265 0.0000 4 6 2.0339 -0.7151 -1.2239 5 8 1.5487 -0.4336 -2.2991 6 7 2.9900 -1.6442 -1.1809 7 6 3.4604 -2.1967 -2.4535 8 6 3.5998 -2.1478 0.0425 9 1 4.6632 -2.3151 -0.1286 10 6 2.9379 -3.4727 0.4262 11 6 3.4251 -1.1476 1.1869 12 1 4.0836 -0.2929 1.0320 13 6 3.7602 -1.8228 2.5183 14 7 2.0225 -0.6989 1.1964 15 6 1.2229 -0.9196 2.2587 16 8 0.0176 -0.9801 2.1100 17 7 1.7592 -1.0730 3.4855 18 6 0.8929 -1.3480 4.6344 19 6 1.7339 -1.4757 5.8785 20 1 2.8063 -1.3628 5.8193 21 6 1.1340 -1.7356 7.0924 22 7 1.8680 -1.8475 8.1780 23 14 -0.7210 -1.9302 7.1950 24 1 -1.0811 -3.3566 6.9928 25 1 -1.1922 -1.4853 8.5312 26 1 -1.3644 -1.1032 6.1426 27 1 -0.3634 0.6560 0.7911 28 1 -0.3634 0.3570 -0.9636 29 1 -0.3633 -1.0130 0.1726 30 1 2.9181 -1.7291 -3.2752 31 1 4.5269 -1.9999 -2.5630 32 1 3.2860 -3.2725 -2.4691 33 1 1.8760 -3.3086 0.6095 34 1 3.0599 -4.1886 -0.3866 35 1 3.4061 -3.8648 1.3290 36 1 2.8738 -2.3272 2.9031 37 1 4.5558 -2.5522 2.3657 38 1 4.0898 -1.0702 3.2346 39 1 2.7187 -1.0014 3.6078 40 1 0.1826 -0.5305 4.7579 41 1 0.3503 -2.2783 4.4661 42 1 1.4459 -2.0307 9.0319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922230570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:30 Heat of formation + Delta-G solvation = 7.941521 kcal Electronic energy + Delta-G solvation = -24259.548670 eV Core-core repulsion = 20856.799920 eV Total energy + Delta-G solvation = -3402.748750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41281 -39.44074 -37.31575 -35.31282 -35.01157 -32.95266 -32.10991 -30.36780 -28.51167 -28.02958 -27.36324 -24.86730 -24.03041 -22.00611 -21.53609 -20.40970 -18.64555 -17.81359 -17.24953 -16.63888 -15.89867 -15.82909 -15.45141 -15.34930 -14.57165 -14.45336 -14.19763 -13.81166 -13.52931 -13.14394 -13.11375 -12.78612 -12.51516 -12.45374 -12.25085 -11.99266 -11.86689 -11.75028 -11.67009 -11.51186 -11.25517 -11.03233 -10.84250 -10.71863 -10.10878 -9.96746 -9.48059 -9.07024 -8.94801 -8.77512 -8.52291 -7.88917 -6.23922 -4.26108 2.47553 2.64711 2.96498 3.25716 3.33328 3.41768 3.52066 4.18759 4.29370 4.32260 4.68778 4.71499 4.84674 5.05660 5.09757 5.12027 5.15705 5.19067 5.26576 5.32997 5.41794 5.55155 5.63650 5.68267 5.72169 5.97044 6.05267 6.14838 6.18482 6.21581 6.50267 6.70289 6.74839 7.08563 7.21712 7.24740 7.31777 7.45073 8.00032 8.20270 8.58457 8.74480 9.10821 9.37493 10.87838 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004927 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.001862 B = 5681.803937 C = 6264.252626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.157 3.843 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.547 6.547 6 N -0.600 5.600 7 C 0.068 3.932 8 C 0.132 3.868 9 H 0.094 0.906 10 C -0.169 4.169 11 C 0.137 3.863 12 H 0.081 0.919 13 C -0.205 4.205 14 N -0.645 5.645 15 C 0.704 3.296 16 O -0.584 6.584 17 N -0.728 5.728 18 C 0.228 3.772 19 C -0.542 4.542 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.892 5.892 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.260 1.260 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -0.534 -16.544 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.114 0.886 4 C 0.303 3.697 5 O -0.424 6.424 6 N -0.332 5.332 7 C -0.074 4.074 8 C 0.027 3.973 9 H 0.112 0.888 10 C -0.227 4.227 11 C 0.033 3.967 12 H 0.099 0.901 13 C -0.263 4.263 14 N -0.388 5.388 15 C 0.407 3.593 16 O -0.462 6.462 17 N -0.394 5.394 18 C 0.105 3.895 19 C -0.580 4.580 20 H 0.096 0.904 21 C -0.125 4.125 22 N -0.530 5.530 23 Si 0.702 3.298 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.184 1.184 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.254 0.746 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.884 -0.461 -16.920 17.920 hybrid contribution -0.206 -0.143 0.329 0.414 sum 5.678 -0.604 -16.590 17.545 Atomic orbital electron populations 1.22054 0.89772 1.05572 1.01486 1.21092 0.98192 0.95115 0.80645 0.88591 1.20540 0.78604 0.79351 0.91253 1.90682 1.56671 1.65080 1.29975 1.47215 1.38492 1.39960 1.07574 1.21783 0.99594 0.99042 0.87022 1.21440 0.97678 0.94499 0.83640 0.88820 1.22282 1.02447 0.95909 1.02045 1.21441 0.83366 0.96306 0.95633 0.90112 1.23194 1.05873 1.02220 0.94989 1.47480 1.11178 1.63973 1.16135 1.15956 0.84783 0.78129 0.80466 1.90885 1.13276 1.57479 1.84545 1.47439 1.13029 1.73036 1.05880 1.19421 0.91042 0.95965 0.83098 1.21042 0.95360 1.51170 0.90419 0.90415 1.24770 0.98457 0.93974 0.95282 1.69879 1.35877 1.48023 0.99186 0.86825 0.85607 0.79366 0.77957 1.19895 1.20984 1.18427 0.90617 0.92291 0.89820 0.89066 0.92203 0.92265 0.91723 0.92386 0.90435 0.86399 0.90340 0.90010 0.74551 0.95962 0.96305 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.59 37.16 0.28 -1.80 16 2 C 0.16 2.24 3.68 -68.91 -0.25 1.99 16 3 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.52 7.34 7.09 -11.73 -0.08 7.26 16 5 O -0.55 -9.11 15.18 5.56 0.08 -9.02 16 6 N -0.60 -6.91 2.80 -175.07 -0.49 -7.40 16 7 C 0.07 0.63 10.36 59.85 0.62 1.25 16 8 C 0.13 1.30 2.72 -68.38 -0.19 1.11 16 9 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 10 C -0.17 -1.78 8.80 37.15 0.33 -1.46 16 11 C 0.14 1.52 3.28 -67.52 -0.22 1.30 16 12 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.21 -2.30 6.23 37.16 0.23 -2.07 16 14 N -0.64 -9.45 2.73 -164.71 -0.45 -9.89 16 15 C 0.70 13.19 7.49 -86.92 -0.65 12.54 16 16 O -0.58 -12.80 12.43 5.28 0.07 -12.73 16 17 N -0.73 -14.11 3.75 -66.41 -0.25 -14.36 16 18 C 0.23 5.39 4.50 -5.19 -0.02 5.36 16 19 C -0.54 -14.23 9.83 -34.44 -0.34 -14.57 16 20 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 21 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 23 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 27 H 0.07 1.27 7.22 -51.93 -0.38 0.90 16 28 H 0.06 0.88 7.58 -51.93 -0.39 0.48 16 29 H 0.08 1.52 6.59 -51.93 -0.34 1.18 16 30 H 0.09 0.99 6.59 -51.93 -0.34 0.65 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 33 H 0.06 0.90 7.97 -51.92 -0.41 0.48 16 34 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 35 H 0.08 0.75 6.45 -51.93 -0.33 0.41 16 36 H 0.12 1.73 4.95 -54.30 -0.27 1.46 16 37 H 0.08 0.67 7.24 -51.93 -0.38 0.29 16 38 H 0.08 0.93 6.77 -51.93 -0.35 0.58 16 39 H 0.41 6.93 3.41 -57.84 -0.20 6.73 16 40 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 41 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -32.12 319.71 -6.74 -38.86 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.23 Total: 5.41 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -0.39 Total: 12.97 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.42 Total: -56.63 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.15 Total: -21.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.12 -6.74 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922230570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.801 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds