Wall clock time and date at job start Tue Mar 31 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.66217 * 2 1 4 4 C 1.50441 * 109.57180 * 239.70195 * 2 1 3 5 5 O 1.21279 * 118.48402 * 47.46647 * 4 2 1 6 6 N 1.33377 * 123.02379 * 227.44970 * 4 2 1 7 7 C 1.46498 * 117.70168 * 184.34027 * 6 4 2 8 8 C 1.45678 * 124.60588 * 4.31296 * 6 4 2 9 9 H 1.09006 * 109.24531 * 217.80457 * 8 6 4 10 10 C 1.52994 * 109.20115 * 98.46492 * 8 6 4 11 11 C 1.52985 * 110.75574 * 338.14818 * 8 6 4 12 12 H 1.09002 * 109.71891 * 286.98180 * 11 8 6 13 13 C 1.53001 * 109.71887 * 166.36918 * 11 8 6 14 14 N 1.47054 * 109.56924 * 120.29404 * 2 1 3 15 15 C 1.34775 * 121.35427 * 342.53974 * 14 2 1 16 16 O 1.21596 * 119.99478 * 25.43500 * 15 14 2 17 17 N 1.34771 * 120.00248 * 205.44143 * 15 14 2 18 18 C 1.46500 * 119.99877 * 181.61576 * 17 15 14 19 19 C 1.50709 * 109.46960 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99582 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99396 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00566 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47183 * 89.99598 * 23 21 19 25 25 H 1.48497 * 109.46914 * 209.99782 * 23 21 19 26 26 H 1.48508 * 109.46865 * 329.99772 * 23 21 19 27 27 H 1.09002 * 109.47531 * 309.66735 * 1 2 3 28 28 H 1.08999 * 109.47340 * 69.67152 * 1 2 3 29 29 H 1.08997 * 109.47100 * 189.67170 * 1 2 3 30 30 H 1.08994 * 109.47361 * 359.97438 * 7 6 4 31 31 H 1.09000 * 109.47115 * 120.00062 * 7 6 4 32 32 H 1.09002 * 109.47002 * 239.99401 * 7 6 4 33 33 H 1.09007 * 109.46766 * 298.74499 * 10 8 6 34 34 H 1.08994 * 109.47642 * 58.74336 * 10 8 6 35 35 H 1.08998 * 109.47393 * 178.74897 * 10 8 6 36 36 H 1.08997 * 109.47186 * 273.74987 * 13 11 8 37 37 H 1.09001 * 109.46971 * 33.75272 * 13 11 8 38 38 H 1.08999 * 109.46915 * 153.74607 * 13 11 8 39 39 H 0.96991 * 120.00008 * 1.61215 * 17 15 14 40 40 H 1.09000 * 109.47331 * 299.99662 * 18 17 15 41 41 H 1.09000 * 109.47649 * 59.99853 * 18 17 15 42 42 H 0.97002 * 119.99397 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8967 1.0265 0.0000 4 6 2.0339 -0.7151 -1.2239 5 8 1.5487 -0.4336 -2.2991 6 7 2.9900 -1.6442 -1.1809 7 6 3.4604 -2.1967 -2.4535 8 6 3.5998 -2.1478 0.0425 9 1 4.6632 -2.3151 -0.1286 10 6 2.9379 -3.4727 0.4262 11 6 3.4251 -1.1476 1.1869 12 1 4.0836 -0.2929 1.0320 13 6 3.7602 -1.8228 2.5183 14 7 2.0225 -0.6989 1.1964 15 6 1.2229 -0.9196 2.2587 16 8 0.0176 -0.9801 2.1100 17 7 1.7592 -1.0730 3.4855 18 6 0.8929 -1.3480 4.6344 19 6 1.7339 -1.4757 5.8785 20 1 2.8063 -1.3628 5.8193 21 6 1.1340 -1.7356 7.0924 22 7 1.8680 -1.8475 8.1780 23 14 -0.7210 -1.9302 7.1950 24 1 -1.0811 -3.3566 6.9928 25 1 -1.1922 -1.4853 8.5312 26 1 -1.3644 -1.1032 6.1426 27 1 -0.3634 0.6560 0.7911 28 1 -0.3634 0.3570 -0.9636 29 1 -0.3633 -1.0130 0.1726 30 1 2.9181 -1.7291 -3.2752 31 1 4.5269 -1.9999 -2.5630 32 1 3.2860 -3.2725 -2.4691 33 1 1.8760 -3.3086 0.6095 34 1 3.0599 -4.1886 -0.3866 35 1 3.4061 -3.8648 1.3290 36 1 2.8738 -2.3272 2.9031 37 1 4.5558 -2.5522 2.3657 38 1 4.0898 -1.0702 3.2346 39 1 2.7187 -1.0014 3.6078 40 1 0.1826 -0.5305 4.7579 41 1 0.3503 -2.2783 4.4661 42 1 1.4459 -2.0307 9.0319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922230570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:29 Heat of formation + Delta-G solvation = -14.124960 kcal Electronic energy + Delta-G solvation = -24260.505544 eV Core-core repulsion = 20856.799920 eV Total energy + Delta-G solvation = -3403.705625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.56617 -40.71575 -38.43817 -36.82913 -36.21165 -34.76235 -33.48744 -31.63906 -29.67233 -29.45729 -28.49329 -25.89174 -25.27994 -23.64329 -22.65682 -21.86307 -19.90062 -18.96497 -18.71914 -18.09459 -17.10756 -17.08632 -16.70985 -16.46583 -16.13716 -15.76333 -15.58331 -15.08694 -14.94700 -14.50748 -14.23913 -14.15070 -13.87495 -13.70741 -13.26221 -13.24351 -13.03058 -12.93973 -12.82977 -12.71574 -12.59042 -12.49707 -12.20833 -12.01757 -11.86387 -11.48850 -11.27411 -10.86274 -10.59726 -9.93965 -9.79466 -9.34622 -8.36139 -6.41535 1.34297 1.36041 1.38596 1.50079 1.52704 1.92526 2.06313 2.31267 3.00164 3.11689 3.23613 3.54586 3.79610 3.91105 4.01270 4.10983 4.27101 4.31733 4.47781 4.48432 4.63335 4.67914 4.72226 4.79830 4.81995 4.87763 4.90786 4.97637 5.07985 5.12613 5.21413 5.31344 5.32647 5.37458 5.53095 5.61806 5.93302 6.20500 6.28087 6.59704 6.95648 7.08764 7.23415 7.64972 8.78106 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004927 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.001862 B = 5681.803937 C = 6264.252626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.153 3.847 3 H 0.118 0.882 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.595 5.595 7 C 0.066 3.934 8 C 0.133 3.867 9 H 0.141 0.859 10 C -0.165 4.165 11 C 0.131 3.869 12 H 0.111 0.889 13 C -0.203 4.203 14 N -0.638 5.638 15 C 0.706 3.294 16 O -0.622 6.622 17 N -0.723 5.723 18 C 0.241 3.759 19 C -0.538 4.538 20 H 0.063 0.937 21 C 0.032 3.968 22 N -0.929 5.929 23 Si 0.931 3.069 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.263 1.263 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.417 0.583 40 H 0.005 0.995 41 H 0.009 0.991 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.978 -0.907 -17.814 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.046 3.954 3 H 0.136 0.864 4 C 0.300 3.700 5 O -0.457 6.457 6 N -0.326 5.326 7 C -0.076 4.076 8 C 0.030 3.970 9 H 0.158 0.842 10 C -0.223 4.223 11 C 0.028 3.972 12 H 0.128 0.872 13 C -0.260 4.260 14 N -0.379 5.379 15 C 0.408 3.592 16 O -0.503 6.503 17 N -0.391 5.391 18 C 0.117 3.883 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.169 4.169 22 N -0.568 5.568 23 Si 0.755 3.245 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.188 1.188 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.268 0.732 40 H 0.023 0.977 41 H 0.027 0.973 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.903 -0.852 -18.215 19.874 hybrid contribution -0.717 -0.065 0.664 0.979 sum 7.186 -0.917 -17.552 18.988 Atomic orbital electron populations 1.21840 0.91414 1.03374 1.01168 1.21174 0.97045 0.96412 0.80728 0.86415 1.20395 0.79148 0.80035 0.90416 1.90675 1.57934 1.66388 1.30730 1.47307 1.37401 1.38750 1.09125 1.21953 1.01092 0.99441 0.85096 1.21658 0.99877 0.93172 0.82339 0.84158 1.22262 0.99940 0.96943 1.03204 1.21827 0.81345 0.97802 0.96206 0.87151 1.23056 1.05389 1.02714 0.94850 1.47435 1.12398 1.63291 1.14801 1.16041 0.84570 0.77632 0.80961 1.90870 1.15235 1.58998 1.85180 1.47290 1.13044 1.73587 1.05176 1.18992 0.90823 0.94749 0.83782 1.21216 0.95019 1.50011 0.91340 0.91840 1.25475 1.02281 0.93977 0.95162 1.69968 1.37566 1.49482 0.99805 0.85956 0.81010 0.79515 0.77989 1.19133 1.20132 1.18785 0.92030 0.91620 0.92620 0.90999 0.88991 0.90934 0.95818 0.90896 0.89368 0.89853 0.86753 0.90063 0.73166 0.97718 0.97342 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 7.59 71.98 0.55 -3.36 16 2 C 0.15 4.24 3.68 44.06 0.16 4.40 16 3 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.51 13.84 7.09 87.79 0.62 14.46 16 5 O -0.58 -18.79 15.18 -3.03 -0.05 -18.84 16 6 N -0.60 -11.92 2.80 -826.98 -2.32 -14.24 16 7 C 0.07 1.00 10.36 127.77 1.32 2.32 16 8 C 0.13 2.08 2.72 45.14 0.12 2.20 16 9 H 0.14 1.07 8.07 -2.38 -0.02 1.05 16 10 C -0.17 -3.07 8.80 71.98 0.63 -2.44 16 11 C 0.13 2.48 3.28 44.84 0.15 2.63 16 12 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.20 -4.01 6.23 71.98 0.45 -3.56 16 14 N -0.64 -17.94 2.73 -793.29 -2.16 -20.11 16 15 C 0.71 26.56 7.49 179.06 1.34 27.90 16 16 O -0.62 -28.13 12.43 -4.02 -0.05 -28.18 16 17 N -0.72 -28.07 3.75 -482.28 -1.81 -29.88 16 18 C 0.24 11.55 4.50 85.64 0.39 11.94 16 19 C -0.54 -28.48 9.83 25.60 0.25 -28.23 16 20 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 21 C 0.03 1.73 5.47 84.65 0.46 2.20 16 22 N -0.93 -53.89 13.96 21.45 0.30 -53.59 16 23 Si 0.93 43.50 27.47 68.60 1.88 45.38 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 27 H 0.06 2.14 7.22 -2.39 -0.02 2.12 16 28 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 29 H 0.05 2.11 6.59 -2.39 -0.02 2.10 16 30 H 0.07 1.42 6.59 -2.39 -0.02 1.41 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.92 7.71 -2.39 -0.02 0.91 16 33 H 0.02 0.63 7.97 -2.38 -0.02 0.61 16 34 H 0.07 1.13 7.71 -2.39 -0.02 1.11 16 35 H 0.09 1.44 6.45 -2.39 -0.02 1.43 16 36 H 0.08 2.35 4.95 -7.06 -0.03 2.31 16 37 H 0.11 1.46 7.24 -2.39 -0.02 1.44 16 38 H 0.08 1.65 6.77 -2.39 -0.02 1.64 16 39 H 0.42 13.95 3.41 -108.70 -0.37 13.58 16 40 H 0.00 0.25 7.20 -2.39 -0.02 0.23 16 41 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 42 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -71.78 319.71 2.82 -68.95 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.58 Total: 20.03 kcal Atomic # 6 Polarization: 24.01 SS G_CDS: 6.45 Total: 30.46 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -5.99 Total: -117.81 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.10 Total: -47.01 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Total: -71.78 2.82 -68.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922230570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.829 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds