Wall clock time and date at job start Tue Mar 31 2020 02:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 120.00159 * 2 1 4 4 H 1.08001 * 120.00167 * 204.57511 * 3 2 1 5 5 C 1.38812 * 120.00189 * 24.56989 * 3 2 1 6 6 N 1.31618 * 119.99792 * 10.83078 * 5 3 2 7 7 Si 1.86793 * 120.00180 * 190.82933 * 5 3 2 8 8 H 1.48504 * 109.46903 * 60.00331 * 7 5 3 9 9 H 1.48504 * 109.47280 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47435 * 300.00258 * 7 5 3 11 11 C 1.46500 * 119.99841 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64093 * 176.86158 * 11 2 1 13 13 C 1.55160 * 110.87629 * 53.61115 * 11 2 1 14 14 C 1.55132 * 101.48682 * 205.89815 * 13 11 2 15 15 N 1.47426 * 104.72069 * 37.29585 * 14 13 11 16 16 C 1.34776 * 125.64503 * 155.81860 * 15 14 13 17 17 O 1.21278 * 119.99804 * 184.91599 * 16 15 14 18 18 C 1.50693 * 120.00113 * 4.92060 * 16 15 14 19 19 C 1.53002 * 109.47327 * 55.44178 * 18 16 15 20 20 C 1.53005 * 109.47286 * 175.44073 * 18 16 15 21 21 C 1.50697 * 109.47285 * 295.44084 * 18 16 15 22 22 N 1.34777 * 120.00318 * 180.02562 * 21 18 16 23 23 O 1.21285 * 119.99979 * 0.02562 * 21 18 16 24 24 C 1.47024 * 108.70236 * 335.54899 * 15 14 13 25 25 H 1.09004 * 109.46957 * 266.64932 * 1 2 3 26 26 H 1.08996 * 109.46740 * 26.65045 * 1 2 3 27 27 H 1.09003 * 109.46901 * 146.64805 * 1 2 3 28 28 H 0.97002 * 119.99934 * 179.97438 * 6 5 3 29 29 H 1.09002 * 110.99836 * 324.13731 * 13 11 2 30 30 H 1.08994 * 111.00404 * 87.94770 * 13 11 2 31 31 H 1.08995 * 110.49375 * 278.45059 * 14 13 11 32 32 H 1.09002 * 110.34093 * 156.05691 * 14 13 11 33 33 H 1.08998 * 109.47068 * 173.46846 * 19 18 16 34 34 H 1.09005 * 109.47090 * 293.46013 * 19 18 16 35 35 H 1.08995 * 109.47210 * 53.46427 * 19 18 16 36 36 H 1.08999 * 109.46834 * 299.99785 * 20 18 16 37 37 H 1.09000 * 109.46641 * 59.99676 * 20 18 16 38 38 H 1.08997 * 109.46901 * 179.97438 * 20 18 16 39 39 H 0.96998 * 119.99981 * 359.97438 * 22 21 18 40 40 H 0.96996 * 119.99818 * 180.02562 * 22 21 18 41 41 H 1.09004 * 109.88074 * 120.71151 * 24 15 14 42 42 H 1.09005 * 109.88057 * 241.71358 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1563 1.2282 -0.3890 5 6 1.5500 2.3336 0.4998 6 7 0.4171 2.2481 1.1644 7 14 2.3507 3.9994 0.2294 8 1 2.4681 4.2615 -1.2276 9 1 1.5176 5.0568 0.8564 10 1 3.7027 4.0044 0.8438 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0923 -0.0554 13 6 1.7290 -2.1781 -1.1661 14 6 2.0621 -3.5882 -0.6116 15 7 1.7542 -3.5070 0.8279 16 6 1.4460 -4.5490 1.6252 17 8 1.1229 -4.3556 2.7780 18 6 1.5031 -5.9543 1.0842 19 6 2.8939 -6.2220 0.5053 20 6 1.2211 -6.9474 2.2135 21 6 0.4682 -6.1181 0.0011 22 7 0.3353 -7.3012 -0.6307 23 8 -0.2452 -5.1853 -0.3020 24 6 1.8455 -2.1019 1.2510 25 1 -0.3633 -0.0601 1.0260 26 1 -0.3633 0.9185 -0.4609 27 1 -0.3633 -0.8585 -0.5650 28 1 -0.0018 3.0501 1.5140 29 1 0.6592 -2.0668 -1.3428 30 1 2.2963 -1.9725 -2.0737 31 1 3.1170 -3.8178 -0.7616 32 1 1.4370 -4.3413 -1.0913 33 1 2.9729 -7.2710 0.2200 34 1 3.0491 -5.5941 -0.3722 35 1 3.6502 -5.9914 1.2555 36 1 1.9697 -6.8290 2.9968 37 1 0.2303 -6.7567 2.6259 38 1 1.2619 -7.9639 1.8220 39 1 0.9060 -8.0471 -0.3885 40 1 -0.3307 -7.4064 -1.3280 41 1 0.8886 -1.7743 1.6574 42 1 2.6254 -1.9915 2.0045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971724316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:59 Heat of formation + Delta-G solvation = -40.090453 kcal Electronic energy + Delta-G solvation = -23880.105289 eV Core-core repulsion = 20475.273716 eV Total energy + Delta-G solvation = -3404.831573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95642 -38.78227 -37.39925 -34.97203 -34.72878 -33.29466 -31.48905 -29.61051 -28.20083 -27.20017 -25.95243 -24.84092 -23.32497 -22.34142 -21.04206 -19.14317 -18.91948 -17.89904 -17.02512 -16.76693 -16.19213 -15.62471 -15.23186 -14.92258 -14.73471 -14.34504 -13.71619 -13.37985 -13.29523 -12.88202 -12.77338 -12.52581 -12.45530 -12.38242 -11.98921 -11.96871 -11.73266 -11.57901 -11.16442 -10.83283 -10.72369 -10.47765 -10.32171 -10.22572 -10.02611 -9.93985 -9.81344 -9.68235 -9.50708 -8.49370 -8.13608 -6.72183 -5.72102 -3.19359 2.38356 2.69185 3.26886 3.40817 3.44188 3.45940 3.46914 4.31224 4.49794 4.52932 4.61873 4.80857 5.13016 5.22642 5.31212 5.35679 5.44473 5.47553 5.51919 5.61191 5.71961 5.78263 5.93460 5.97531 6.02872 6.12082 6.44900 6.51046 6.52880 6.65228 6.78359 6.97751 7.00591 7.01792 7.44730 7.76878 7.83977 7.94000 8.00502 8.41727 8.46537 9.24707 9.86841 10.37843 11.33749 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033842 B = 0.004205 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.164187 B = 6657.063779 C = 6776.204669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.150 4.150 14 C 0.095 3.905 15 N -0.594 5.594 16 C 0.548 3.452 17 O -0.541 6.541 18 C -0.103 4.103 19 C -0.148 4.148 20 C -0.125 4.125 21 C 0.528 3.472 22 N -0.852 5.852 23 O -0.516 6.516 24 C 0.087 3.913 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.001 0.999 28 H 0.254 0.746 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.400 0.600 40 H 0.403 0.597 41 H 0.073 0.927 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -21.872 -4.970 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.190 4.190 14 C -0.029 4.029 15 N -0.326 5.326 16 C 0.334 3.666 17 O -0.419 6.419 18 C -0.109 4.109 19 C -0.205 4.205 20 C -0.183 4.183 21 C 0.312 3.688 22 N -0.417 5.417 23 O -0.390 6.390 24 C -0.037 4.037 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.229 0.771 40 H 0.235 0.765 41 H 0.091 0.909 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.707 -20.883 -4.283 21.638 hybrid contribution 0.328 0.426 -0.198 0.573 sum 4.035 -20.458 -4.481 21.328 Atomic orbital electron populations 1.20795 0.82405 0.97214 0.98034 1.43888 1.01918 0.99833 1.84837 1.19184 0.99444 0.85640 1.34859 0.91344 1.25097 0.97804 0.98761 0.97707 1.70068 1.18960 1.27746 1.38016 0.86299 0.78551 0.83629 0.77785 1.21011 1.21626 1.20888 1.21361 0.96164 0.86039 0.90177 0.90524 1.23322 1.03035 0.93111 0.99549 1.22611 0.99087 0.99979 0.81185 1.48283 1.66965 1.07591 1.09771 1.19258 0.77256 0.84692 0.85389 1.90693 1.48014 1.85134 1.18020 1.21105 0.96923 0.96400 0.96493 1.22029 0.93292 1.02718 1.02490 1.21652 1.04183 0.95831 0.96592 1.20156 0.83881 0.82766 0.82014 1.43787 1.42033 1.13771 1.42060 1.90869 1.44475 1.39200 1.64498 1.22923 1.02317 0.78566 0.99914 0.96245 0.92457 0.98096 0.93553 0.90147 0.90749 0.92096 0.90526 0.91128 0.90606 0.90607 0.90517 0.91174 0.91780 0.77110 0.76536 0.90852 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.15 8.02 59.85 0.48 4.63 16 2 N -0.58 -14.93 2.93 -171.38 -0.50 -15.44 16 3 C -0.26 -7.21 9.60 -15.06 -0.14 -7.36 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 5 C 0.01 0.15 5.09 -17.43 -0.09 0.06 16 6 N -0.90 -26.88 10.74 55.49 0.60 -26.28 16 7 Si 0.91 21.94 29.57 -169.99 -5.03 16.92 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 C 0.17 3.63 3.43 -66.10 -0.23 3.40 16 12 H 0.08 1.55 7.94 -51.93 -0.41 1.13 16 13 C -0.15 -2.65 6.63 -24.46 -0.16 -2.81 16 14 C 0.09 1.43 4.70 -2.41 -0.01 1.42 16 15 N -0.59 -10.72 3.14 -170.38 -0.54 -11.25 16 16 C 0.55 9.71 5.99 -10.99 -0.07 9.64 16 17 O -0.54 -11.58 16.32 5.56 0.09 -11.49 16 18 C -0.10 -1.22 0.60 -156.81 -0.09 -1.32 16 19 C -0.15 -1.24 8.00 37.16 0.30 -0.94 16 20 C -0.12 -1.24 7.67 37.16 0.29 -0.95 16 21 C 0.53 6.38 5.45 -10.99 -0.06 6.32 16 22 N -0.85 -5.74 8.67 31.22 0.27 -5.47 16 23 O -0.52 -8.81 14.70 5.55 0.08 -8.73 16 24 C 0.09 1.84 6.51 -3.06 -0.02 1.82 16 25 H 0.02 0.54 7.41 -51.93 -0.38 0.16 16 26 H 0.06 1.59 6.81 -51.93 -0.35 1.23 16 27 H 0.00 0.02 6.01 -51.93 -0.31 -0.29 16 28 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.08 1.59 6.02 -51.93 -0.31 1.27 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.76 6.99 -51.93 -0.36 0.39 16 32 H 0.08 1.12 4.70 -51.93 -0.24 0.88 16 33 H 0.07 0.35 7.75 -51.93 -0.40 -0.06 16 34 H 0.08 0.66 4.99 -51.93 -0.26 0.40 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 39 H 0.40 1.39 7.80 -40.82 -0.32 1.07 16 40 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 41 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -35.69 325.66 -6.06 -41.75 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.13 Total: 1.19 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 0.19 Total: 13.90 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.17 Total: -58.44 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.69 -6.06 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971724316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.657 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds