Wall clock time and date at job start Tue Mar 31 2020 02:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00082 * 2 1 4 4 H 1.08001 * 120.00631 * 202.06287 * 3 2 1 5 5 C 1.38819 * 119.99871 * 22.06839 * 3 2 1 6 6 N 1.31616 * 119.99746 * 8.69306 * 5 3 2 7 7 Si 1.86798 * 120.00049 * 188.69910 * 5 3 2 8 8 H 1.48499 * 109.47319 * 89.99613 * 7 5 3 9 9 H 1.48500 * 109.47000 * 209.99740 * 7 5 3 10 10 H 1.48497 * 109.47058 * 329.99616 * 7 5 3 11 11 C 1.46493 * 120.00175 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64604 * 178.30620 * 11 2 1 13 13 C 1.55160 * 110.72047 * 301.45120 * 11 2 1 14 14 C 1.54914 * 101.58297 * 154.03976 * 13 11 2 15 15 N 1.47425 * 104.83263 * 322.99296 * 14 13 11 16 16 C 1.34773 * 125.64752 * 203.85823 * 15 14 13 17 17 O 1.21279 * 120.00277 * 355.08522 * 16 15 14 18 18 C 1.50701 * 119.99983 * 175.07994 * 16 15 14 19 19 C 1.52991 * 109.47447 * 301.54502 * 18 16 15 20 20 C 1.52996 * 109.46843 * 61.54541 * 18 16 15 21 21 C 1.50703 * 109.47137 * 181.54098 * 18 16 15 22 22 N 1.34778 * 120.00009 * 180.02562 * 21 18 16 23 23 O 1.21279 * 120.00164 * 0.02562 * 21 18 16 24 24 C 1.47017 * 108.70395 * 24.12703 * 15 14 13 25 25 H 1.09002 * 109.46960 * 275.36281 * 1 2 3 26 26 H 1.09002 * 109.47481 * 35.36597 * 1 2 3 27 27 H 1.08994 * 109.47145 * 155.36560 * 1 2 3 28 28 H 0.97008 * 119.99700 * 180.02562 * 6 5 3 29 29 H 1.09004 * 111.00326 * 35.97314 * 13 11 2 30 30 H 1.08995 * 111.00293 * 272.11550 * 13 11 2 31 31 H 1.08997 * 110.36847 * 204.15249 * 14 13 11 32 32 H 1.09004 * 110.45444 * 81.87794 * 14 13 11 33 33 H 1.09005 * 109.47315 * 74.08452 * 19 18 16 34 34 H 1.09002 * 109.47426 * 194.08728 * 19 18 16 35 35 H 1.09003 * 109.47279 * 314.08519 * 19 18 16 36 36 H 1.09003 * 109.47726 * 43.73296 * 20 18 16 37 37 H 1.09009 * 109.47377 * 163.73005 * 20 18 16 38 38 H 1.08998 * 109.47619 * 283.72754 * 20 18 16 39 39 H 0.96995 * 119.99985 * 0.02562 * 22 21 18 40 40 H 0.97003 * 119.99968 * 180.02562 * 22 21 18 41 41 H 1.09001 * 109.88829 * 118.35684 * 24 15 14 42 42 H 1.09000 * 109.88475 * 239.52143 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2202 -0.3513 5 6 1.5319 2.3440 0.4517 6 7 0.3550 2.2766 1.0371 7 14 2.3707 3.9981 0.2285 8 1 1.9661 4.5866 -1.0735 9 1 1.9689 4.9095 1.3299 10 1 3.8439 3.8131 0.2516 11 6 2.1975 -1.2686 -0.0006 12 1 3.2726 -1.0917 -0.0306 13 6 1.8163 -2.1232 1.2371 14 6 2.1053 -3.5569 0.7262 15 7 1.6993 -3.5415 -0.6910 16 6 1.3401 -4.6187 -1.4169 17 8 1.4189 -5.7287 -0.9345 18 6 0.8405 -4.4441 -2.8279 19 6 -0.3917 -3.5373 -2.8241 20 6 1.9388 -3.8086 -3.6827 21 6 0.4730 -5.7887 -3.4007 22 7 -0.0006 -5.8783 -4.6593 23 8 0.6034 -6.7901 -2.7291 24 6 1.7573 -2.1573 -1.1830 25 1 -0.3633 0.0960 1.0232 26 1 -0.3634 0.8380 -0.5948 27 1 -0.3633 -0.9341 -0.4283 28 1 -0.0769 3.0860 1.3524 29 1 0.7618 -2.0023 1.4855 30 1 2.4479 -1.8779 2.0908 31 1 1.5140 -4.2842 1.2823 32 1 3.1674 -3.7856 0.8140 33 1 -0.0834 -2.5061 -2.6512 34 1 -0.8983 -3.6086 -3.7866 35 1 -1.0713 -3.8510 -2.0317 36 1 2.8935 -4.2859 -3.4614 37 1 1.7014 -3.9431 -4.7381 38 1 2.0041 -2.7441 -3.4578 39 1 -0.1046 -5.0775 -5.1966 40 1 -0.2375 -6.7438 -5.0279 41 1 2.4824 -2.0819 -1.9934 42 1 0.7730 -1.8469 -1.5336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971724317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:01 Heat of formation + Delta-G solvation = -33.861228 kcal Electronic energy + Delta-G solvation = -23833.186272 eV Core-core repulsion = 20428.624818 eV Total energy + Delta-G solvation = -3404.561454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81187 -38.91664 -37.16555 -35.24452 -34.62516 -33.19335 -31.47487 -29.70380 -27.84349 -27.62944 -26.13091 -24.80151 -23.37421 -22.55740 -20.66015 -19.40611 -19.06111 -17.49973 -17.07516 -16.67036 -15.88595 -15.76735 -15.17724 -15.04574 -14.57020 -14.09026 -13.90429 -13.52444 -13.42390 -13.16925 -12.96828 -12.55790 -12.49884 -12.30868 -12.02232 -11.90530 -11.46704 -11.38256 -11.23941 -10.94756 -10.83400 -10.56544 -10.49356 -10.23977 -9.96433 -9.92105 -9.89831 -9.73099 -9.13155 -8.63523 -8.23596 -6.88733 -5.80962 -3.28794 2.59186 2.91402 2.99212 3.32493 3.39174 3.40565 3.56476 4.33140 4.44390 4.58481 4.81097 4.87929 5.17674 5.23612 5.26970 5.31459 5.44764 5.45528 5.51533 5.58210 5.68832 5.75374 5.80623 5.94988 5.99099 6.14390 6.24165 6.40238 6.57394 6.62186 6.68225 6.72509 6.86618 7.19644 7.31528 7.65974 7.73959 7.82922 8.21555 8.29379 8.48679 9.14179 9.75636 10.23618 11.23464 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.004332 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.032971 B = 6462.200185 C = 6869.675880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.588 5.588 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.908 5.908 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.110 3.890 15 N -0.611 5.611 16 C 0.535 3.465 17 O -0.509 6.509 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.147 4.147 21 C 0.527 3.473 22 N -0.859 5.859 23 O -0.498 6.498 24 C 0.066 3.934 25 H 0.031 0.969 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.253 0.747 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.399 0.601 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -9.355 -10.795 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.309 5.309 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.013 4.013 15 N -0.346 5.346 16 C 0.321 3.679 17 O -0.383 6.383 18 C -0.106 4.106 19 C -0.205 4.205 20 C -0.204 4.204 21 C 0.309 3.691 22 N -0.425 5.425 23 O -0.369 6.369 24 C -0.059 4.059 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.227 0.773 40 H 0.232 0.768 41 H 0.084 0.916 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.167 -10.409 -9.889 14.359 hybrid contribution 0.158 1.110 -0.527 1.239 sum -0.010 -9.299 -10.417 13.964 Atomic orbital electron populations 1.20824 0.82343 0.95284 0.99751 1.43886 1.01897 0.99833 1.85267 1.19244 0.97798 0.85185 1.36688 0.91118 1.25034 0.97340 0.98577 0.98383 1.70071 1.15974 1.27150 1.42037 0.86215 0.78924 0.83840 0.77286 1.21462 1.21708 1.20463 1.21296 0.96359 0.85913 0.90268 0.90334 1.23388 1.02775 0.92781 1.00161 1.22211 0.99435 0.98612 0.81034 1.48380 1.66640 1.07319 1.12253 1.19458 0.78395 0.83684 0.86375 1.90813 1.52774 1.23457 1.71232 1.20789 0.99232 0.95293 0.95250 1.22075 0.95146 1.00241 1.03083 1.22055 0.97041 1.02532 0.98816 1.19932 0.77025 0.90382 0.81727 1.43822 1.70074 1.12982 1.15590 1.90879 1.50383 1.37227 1.58430 1.23231 1.02230 0.80794 0.99635 0.95053 0.93477 0.98376 0.93650 0.90712 0.90425 0.91292 0.91964 0.89302 0.91283 0.91495 0.91574 0.91284 0.89483 0.77277 0.76794 0.91622 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.65 59.85 0.46 4.11 16 2 N -0.59 -13.29 2.94 -171.39 -0.50 -13.80 16 3 C -0.26 -6.57 9.64 -15.06 -0.15 -6.72 16 4 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 5 C 0.01 0.13 5.19 -17.43 -0.09 0.04 16 6 N -0.91 -25.01 10.42 55.49 0.58 -24.43 16 7 Si 0.91 20.69 29.56 -169.99 -5.03 15.67 16 8 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 C 0.17 3.15 3.43 -66.09 -0.23 2.92 16 12 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 13 C -0.15 -2.57 6.65 -24.58 -0.16 -2.73 16 14 C 0.11 1.74 6.89 -2.53 -0.02 1.72 16 15 N -0.61 -9.73 3.31 -170.52 -0.56 -10.30 16 16 C 0.54 9.08 6.45 -10.99 -0.07 9.01 16 17 O -0.51 -10.79 14.48 -18.96 -0.27 -11.07 16 18 C -0.10 -1.26 0.59 -156.82 -0.09 -1.36 16 19 C -0.15 -1.61 8.12 37.15 0.30 -1.31 16 20 C -0.15 -1.48 7.99 37.16 0.30 -1.18 16 21 C 0.53 7.18 6.74 -10.98 -0.07 7.10 16 22 N -0.86 -7.05 8.41 31.22 0.26 -6.79 16 23 O -0.50 -9.47 15.02 -18.96 -0.28 -9.76 16 24 C 0.07 1.01 4.73 -3.06 -0.01 0.99 16 25 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 26 H 0.05 1.15 7.17 -51.93 -0.37 0.78 16 27 H 0.00 -0.04 6.28 -51.93 -0.33 -0.37 16 28 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.07 1.39 7.28 -51.93 -0.38 1.01 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.99 4.84 -51.93 -0.25 0.74 16 34 H 0.07 0.54 7.23 -51.93 -0.38 0.16 16 35 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 36 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 37 H 0.07 0.49 7.19 -51.92 -0.37 0.12 16 38 H 0.09 0.85 5.09 -51.93 -0.26 0.59 16 39 H 0.40 2.04 7.50 -40.82 -0.31 1.74 16 40 H 0.40 2.80 8.93 -40.82 -0.36 2.44 16 41 H 0.07 0.91 5.94 -51.93 -0.31 0.60 16 42 H 0.08 1.26 3.32 -51.93 -0.17 1.09 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -33.70 322.22 -6.73 -40.43 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.93 Total: 2.57 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 0.16 Total: 12.61 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.23 Total: -55.32 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.56 Total: -20.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.70 -6.73 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971724317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.570 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds