Wall clock time and date at job start Tue Mar 31 2020 02:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00082 * 2 1 4 4 H 1.08001 * 120.00631 * 202.06287 * 3 2 1 5 5 C 1.38819 * 119.99871 * 22.06839 * 3 2 1 6 6 N 1.31616 * 119.99746 * 8.69306 * 5 3 2 7 7 Si 1.86798 * 120.00049 * 188.69910 * 5 3 2 8 8 H 1.48499 * 109.47319 * 89.99613 * 7 5 3 9 9 H 1.48500 * 109.47000 * 209.99740 * 7 5 3 10 10 H 1.48497 * 109.47058 * 329.99616 * 7 5 3 11 11 C 1.46493 * 120.00175 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64604 * 178.30620 * 11 2 1 13 13 C 1.55160 * 110.72047 * 301.45120 * 11 2 1 14 14 C 1.54914 * 101.58297 * 154.03976 * 13 11 2 15 15 N 1.47425 * 104.83263 * 322.99296 * 14 13 11 16 16 C 1.34773 * 125.64752 * 203.85823 * 15 14 13 17 17 O 1.21279 * 120.00277 * 355.08522 * 16 15 14 18 18 C 1.50701 * 119.99983 * 175.07994 * 16 15 14 19 19 C 1.52991 * 109.47447 * 301.54502 * 18 16 15 20 20 C 1.52996 * 109.46843 * 61.54541 * 18 16 15 21 21 C 1.50703 * 109.47137 * 181.54098 * 18 16 15 22 22 N 1.34778 * 120.00009 * 180.02562 * 21 18 16 23 23 O 1.21279 * 120.00164 * 0.02562 * 21 18 16 24 24 C 1.47017 * 108.70395 * 24.12703 * 15 14 13 25 25 H 1.09002 * 109.46960 * 275.36281 * 1 2 3 26 26 H 1.09002 * 109.47481 * 35.36597 * 1 2 3 27 27 H 1.08994 * 109.47145 * 155.36560 * 1 2 3 28 28 H 0.97008 * 119.99700 * 180.02562 * 6 5 3 29 29 H 1.09004 * 111.00326 * 35.97314 * 13 11 2 30 30 H 1.08995 * 111.00293 * 272.11550 * 13 11 2 31 31 H 1.08997 * 110.36847 * 204.15249 * 14 13 11 32 32 H 1.09004 * 110.45444 * 81.87794 * 14 13 11 33 33 H 1.09005 * 109.47315 * 74.08452 * 19 18 16 34 34 H 1.09002 * 109.47426 * 194.08728 * 19 18 16 35 35 H 1.09003 * 109.47279 * 314.08519 * 19 18 16 36 36 H 1.09003 * 109.47726 * 43.73296 * 20 18 16 37 37 H 1.09009 * 109.47377 * 163.73005 * 20 18 16 38 38 H 1.08998 * 109.47619 * 283.72754 * 20 18 16 39 39 H 0.96995 * 119.99985 * 0.02562 * 22 21 18 40 40 H 0.97003 * 119.99968 * 180.02562 * 22 21 18 41 41 H 1.09001 * 109.88829 * 118.35684 * 24 15 14 42 42 H 1.09000 * 109.88475 * 239.52143 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2202 -0.3513 5 6 1.5319 2.3440 0.4517 6 7 0.3550 2.2766 1.0371 7 14 2.3707 3.9981 0.2285 8 1 1.9661 4.5866 -1.0735 9 1 1.9689 4.9095 1.3299 10 1 3.8439 3.8131 0.2516 11 6 2.1975 -1.2686 -0.0006 12 1 3.2726 -1.0917 -0.0306 13 6 1.8163 -2.1232 1.2371 14 6 2.1053 -3.5569 0.7262 15 7 1.6993 -3.5415 -0.6910 16 6 1.3401 -4.6187 -1.4169 17 8 1.4189 -5.7287 -0.9345 18 6 0.8405 -4.4441 -2.8279 19 6 -0.3917 -3.5373 -2.8241 20 6 1.9388 -3.8086 -3.6827 21 6 0.4730 -5.7887 -3.4007 22 7 -0.0006 -5.8783 -4.6593 23 8 0.6034 -6.7901 -2.7291 24 6 1.7573 -2.1573 -1.1830 25 1 -0.3633 0.0960 1.0232 26 1 -0.3634 0.8380 -0.5948 27 1 -0.3633 -0.9341 -0.4283 28 1 -0.0769 3.0860 1.3524 29 1 0.7618 -2.0023 1.4855 30 1 2.4479 -1.8779 2.0908 31 1 1.5140 -4.2842 1.2823 32 1 3.1674 -3.7856 0.8140 33 1 -0.0834 -2.5061 -2.6512 34 1 -0.8983 -3.6086 -3.7866 35 1 -1.0713 -3.8510 -2.0317 36 1 2.8935 -4.2859 -3.4614 37 1 1.7014 -3.9431 -4.7381 38 1 2.0041 -2.7441 -3.4578 39 1 -0.1046 -5.0775 -5.1966 40 1 -0.2375 -6.7438 -5.0279 41 1 2.4824 -2.0819 -1.9934 42 1 0.7730 -1.8469 -1.5336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971724317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:01 Heat of formation + Delta-G solvation = -58.376129 kcal Electronic energy + Delta-G solvation = -23834.249318 eV Core-core repulsion = 20428.624818 eV Total energy + Delta-G solvation = -3405.624500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98388 -40.15863 -38.61562 -36.56681 -36.09147 -34.12567 -33.22267 -31.16901 -29.28333 -28.47493 -27.99827 -26.02504 -24.71313 -24.04774 -21.81015 -20.96758 -20.18460 -18.88761 -18.45672 -17.79682 -17.41387 -16.96893 -16.53568 -16.23557 -15.97213 -15.42536 -15.06354 -14.99212 -14.83036 -14.52327 -14.26231 -14.11361 -13.67561 -13.38264 -13.20108 -13.14220 -12.87656 -12.76015 -12.63634 -12.51002 -12.30261 -12.27232 -12.08907 -11.93281 -11.75938 -11.42835 -11.08005 -10.61917 -10.59096 -10.38525 -9.56469 -8.76003 -7.77206 -5.25868 1.52083 1.53093 1.54371 1.62146 1.69297 1.83256 2.53387 2.60531 3.23136 3.36914 3.65370 3.71307 3.84251 3.88730 3.95359 4.10807 4.29697 4.31374 4.42899 4.54730 4.58701 4.71354 4.73908 4.76485 4.81448 4.95490 5.02766 5.12837 5.18706 5.23415 5.31106 5.41243 5.46319 5.71171 5.82479 5.93063 6.36073 6.42953 6.55499 7.14125 7.20732 7.40369 7.90491 8.33871 9.25774 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.004332 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.032971 B = 6462.200185 C = 6869.675880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.600 5.600 3 C -0.259 4.259 4 H 0.079 0.921 5 C -0.049 4.049 6 N -0.940 5.940 7 Si 0.967 3.033 8 H -0.286 1.286 9 H -0.302 1.302 10 H -0.268 1.268 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.113 3.887 15 N -0.609 5.609 16 C 0.527 3.473 17 O -0.557 6.557 18 C -0.095 4.095 19 C -0.145 4.145 20 C -0.144 4.144 21 C 0.525 3.475 22 N -0.829 5.829 23 O -0.561 6.561 24 C 0.079 3.921 25 H -0.001 1.001 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.246 0.754 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.418 0.582 40 H 0.411 0.589 41 H 0.091 0.909 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -9.087 -13.318 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.321 5.321 3 C -0.389 4.389 4 H 0.097 0.903 5 C -0.244 4.244 6 N -0.587 5.587 7 Si 0.796 3.204 8 H -0.212 1.212 9 H -0.229 1.229 10 H -0.193 1.193 11 C 0.056 3.944 12 H 0.102 0.898 13 C -0.181 4.181 14 C -0.010 4.010 15 N -0.343 5.343 16 C 0.315 3.685 17 O -0.435 6.435 18 C -0.101 4.101 19 C -0.202 4.202 20 C -0.201 4.201 21 C 0.307 3.693 22 N -0.396 5.396 23 O -0.438 6.438 24 C -0.045 4.045 25 H 0.017 0.983 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.251 0.749 40 H 0.243 0.757 41 H 0.109 0.891 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.546 -10.125 -12.487 16.086 hybrid contribution -0.049 0.965 0.238 0.995 sum 0.497 -9.160 -12.250 15.304 Atomic orbital electron populations 1.20491 0.82658 0.95697 0.97528 1.44022 1.01938 1.00721 1.85426 1.19617 0.98068 0.86134 1.35108 0.90301 1.25729 0.98066 1.01637 0.99001 1.70247 1.17425 1.27247 1.43770 0.85270 0.78501 0.80070 0.76586 1.21245 1.22921 1.19289 1.21485 0.96288 0.84798 0.91858 0.89837 1.23225 1.01658 0.93355 0.99885 1.22161 1.00156 0.97398 0.81242 1.48436 1.66246 1.07491 1.12141 1.20268 0.77454 0.82875 0.87916 1.90795 1.54761 1.25259 1.72647 1.20821 1.00803 0.95657 0.92846 1.22099 0.94086 0.99425 1.04572 1.22101 0.95382 1.02295 1.00310 1.20134 0.76624 0.89817 0.82691 1.43552 1.67641 1.14552 1.13808 1.90863 1.53435 1.39075 1.60408 1.23084 1.03067 0.79626 0.98716 0.98304 0.95922 0.95316 0.94481 0.92466 0.90166 0.92009 0.90588 0.89209 0.87559 0.93388 0.92671 0.87708 0.88804 0.74949 0.75692 0.89124 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.14 7.65 127.77 0.98 9.12 16 2 N -0.60 -26.55 2.94 -696.14 -2.05 -28.60 16 3 C -0.26 -12.84 9.64 84.04 0.81 -12.03 16 4 H 0.08 3.72 7.81 -2.91 -0.02 3.70 16 5 C -0.05 -2.57 5.19 84.86 0.44 -2.13 16 6 N -0.94 -52.62 10.42 21.65 0.23 -52.40 16 7 Si 0.97 42.29 29.56 68.60 2.03 44.31 16 8 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 9 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 C 0.16 5.75 3.43 46.18 0.16 5.91 16 12 H 0.08 2.86 7.92 -2.39 -0.02 2.84 16 13 C -0.14 -4.71 6.65 31.99 0.21 -4.50 16 14 C 0.11 3.50 6.89 86.86 0.60 4.10 16 15 N -0.61 -18.59 3.31 -811.79 -2.69 -21.28 16 16 C 0.53 17.45 6.45 87.66 0.57 18.02 16 17 O -0.56 -24.00 14.48 20.41 0.30 -23.71 16 18 C -0.09 -2.20 0.59 -53.68 -0.03 -2.23 16 19 C -0.14 -2.72 8.12 71.98 0.58 -2.13 16 20 C -0.14 -2.36 7.99 71.98 0.58 -1.78 16 21 C 0.52 13.37 6.74 87.66 0.59 13.96 16 22 N -0.83 -10.92 8.41 -173.53 -1.46 -12.38 16 23 O -0.56 -21.44 15.02 20.41 0.31 -21.13 16 24 C 0.08 2.23 4.73 86.73 0.41 2.64 16 25 H 0.00 -0.07 7.38 -2.39 -0.02 -0.09 16 26 H 0.02 1.10 7.17 -2.39 -0.02 1.08 16 27 H 0.03 1.09 6.28 -2.39 -0.02 1.07 16 28 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 29 H 0.06 2.12 7.28 -2.39 -0.02 2.11 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.06 2.01 8.09 -2.39 -0.02 2.00 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 1.69 4.84 -2.38 -0.01 1.68 16 34 H 0.11 1.18 7.23 -2.39 -0.02 1.17 16 35 H 0.05 1.10 8.06 -2.39 -0.02 1.08 16 36 H 0.05 1.06 8.03 -2.39 -0.02 1.04 16 37 H 0.10 0.97 7.19 -2.38 -0.02 0.95 16 38 H 0.09 1.43 5.09 -2.39 -0.01 1.42 16 39 H 0.42 2.31 7.50 -92.71 -0.70 1.62 16 40 H 0.41 4.56 8.93 -92.71 -0.83 3.73 16 41 H 0.09 2.18 5.94 -2.39 -0.01 2.17 16 42 H 0.08 2.38 3.32 -2.39 -0.01 2.37 16 Total: -1.00 -75.84 322.22 2.10 -73.74 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -0.46 Total: 12.52 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 5.89 Total: 28.93 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -5.97 Total: -114.65 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: 0.60 Total: -44.84 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -75.84 2.10 -73.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971724317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.363 kcal (2) G-P(sol) polarization free energy of solvation -75.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds