Wall clock time and date at job start Tue Mar 31 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.63805 * 2 1 4 4 C 1.54317 * 110.72527 * 236.66656 * 2 1 3 5 5 N 1.47019 * 107.27430 * 219.44355 * 4 2 1 6 6 C 1.34776 * 125.64942 * 178.89486 * 5 4 2 7 7 O 1.21280 * 119.99846 * 174.37298 * 6 5 4 8 8 C 1.50697 * 120.00149 * 354.37058 * 6 5 4 9 9 C 1.53002 * 109.47068 * 293.67368 * 8 6 5 10 10 C 1.53005 * 109.46994 * 53.67370 * 8 6 5 11 11 C 1.50695 * 109.47206 * 173.67265 * 8 6 5 12 12 N 1.34773 * 120.00213 * 180.02562 * 11 8 6 13 13 O 1.21279 * 120.00109 * 359.97438 * 11 8 6 14 14 C 1.47425 * 108.70101 * 358.93477 * 5 4 2 15 15 C 1.54918 * 104.82960 * 24.13215 * 14 5 4 16 16 H 1.09001 * 111.03502 * 204.89681 * 15 14 5 17 17 N 1.46499 * 111.00320 * 81.06519 * 15 14 5 18 18 C 1.36938 * 120.00401 * 92.80402 * 17 15 14 19 19 H 1.08004 * 119.99721 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99981 * 179.72422 * 18 17 15 21 21 N 1.31616 * 120.00177 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99711 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47360 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47386 * 119.99983 * 22 20 18 25 25 H 1.48497 * 109.46967 * 239.99624 * 22 20 18 26 26 H 1.08994 * 109.47513 * 296.85746 * 1 2 3 27 27 H 1.09006 * 109.46837 * 56.86159 * 1 2 3 28 28 H 1.09000 * 109.46901 * 176.85434 * 1 2 3 29 29 H 1.09008 * 109.88111 * 338.86046 * 4 2 1 30 30 H 1.09001 * 109.88625 * 100.01978 * 4 2 1 31 31 H 1.08999 * 109.47309 * 63.35729 * 9 8 6 32 32 H 1.08999 * 109.46995 * 183.35713 * 9 8 6 33 33 H 1.08999 * 109.47126 * 303.35467 * 9 8 6 34 34 H 1.09000 * 109.46942 * 44.67542 * 10 8 6 35 35 H 1.08997 * 109.47163 * 164.67993 * 10 8 6 36 36 H 1.09007 * 109.46667 * 284.67547 * 10 8 6 37 37 H 0.97007 * 119.99989 * 0.02562 * 12 11 8 38 38 H 0.97006 * 120.00663 * 179.97438 * 12 11 8 39 39 H 1.08989 * 110.37040 * 265.29404 * 14 5 4 40 40 H 1.09003 * 110.36740 * 142.96652 * 14 5 4 41 41 H 0.97003 * 119.99440 * 272.80122 * 17 15 14 42 42 H 0.96998 * 120.00191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7931 -1.2059 5 7 3.2446 -1.5518 -0.7363 6 6 3.9915 -2.3871 -1.4853 7 8 4.9959 -2.8837 -1.0210 8 6 3.5787 -2.7040 -2.8996 9 6 2.2678 -3.4927 -2.8836 10 6 3.3807 -1.4012 -3.6771 11 6 4.6522 -3.5271 -3.5637 12 7 4.4994 -3.9297 -4.8408 13 8 5.6540 -3.8265 -2.9493 14 6 3.4634 -1.2484 0.6897 15 6 2.0789 -0.7933 1.2151 16 1 2.1842 -0.1484 2.0875 17 7 1.2272 -1.9462 1.5177 18 6 1.2021 -2.4653 2.7847 19 1 1.8107 -2.0250 3.5607 20 6 0.3908 -3.5541 3.0727 21 7 -0.3549 -4.0873 2.1282 22 14 0.3561 -4.2617 4.8011 23 1 1.2773 -3.4878 5.6714 24 1 -1.0241 -4.1784 5.3426 25 1 0.7880 -5.6820 4.7632 26 1 -0.3634 0.4642 0.9167 27 1 -0.3633 0.5618 -0.8606 28 1 -0.3633 -1.0261 -0.0564 29 1 1.3130 -1.4784 -1.5751 30 1 2.3741 -0.1057 -1.9975 31 1 1.4773 -2.8751 -2.4574 32 1 2.0002 -3.7733 -3.9023 33 1 2.3919 -4.3917 -2.2798 34 1 4.2069 -0.7225 -3.4652 35 1 3.3520 -1.6163 -4.7452 36 1 2.4421 -0.9367 -3.3746 37 1 3.6985 -3.6893 -5.3326 38 1 5.1905 -4.4592 -5.2685 39 1 4.1931 -0.4463 0.7993 40 1 3.7961 -2.1404 1.2206 41 1 0.6809 -2.3418 0.8206 42 1 -0.9222 -4.8479 2.3296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054759162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:04 Heat of formation + Delta-G solvation = -50.997394 kcal Electronic energy + Delta-G solvation = -24020.216155 eV Core-core repulsion = 20614.911622 eV Total energy + Delta-G solvation = -3405.304534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71534 -38.95124 -37.16261 -35.17422 -33.76740 -33.03250 -32.05606 -30.45134 -27.84683 -27.54999 -26.15896 -24.33277 -23.78821 -22.33231 -20.57067 -19.32667 -18.95192 -17.59280 -17.25036 -16.53570 -15.78743 -15.62543 -15.09258 -14.84178 -14.51444 -14.03269 -13.93636 -13.64475 -13.31165 -13.16007 -12.88069 -12.74406 -12.42909 -12.28688 -12.08686 -11.78072 -11.62350 -11.35089 -11.26012 -11.06885 -10.91502 -10.68615 -10.44141 -10.22240 -9.95052 -9.79607 -9.65052 -9.63385 -9.05870 -8.93727 -8.10329 -6.99736 -5.81500 -3.09822 2.70269 3.09445 3.13694 3.42517 3.49377 3.50676 3.68550 4.47082 4.56318 4.64284 4.87348 4.89289 4.97430 5.16388 5.31320 5.32846 5.46100 5.56335 5.57749 5.62160 5.69543 5.73978 5.77195 5.94388 5.98540 6.17386 6.21953 6.27825 6.34547 6.38404 6.58004 6.74110 6.77108 6.83291 6.94320 7.28362 7.68571 8.00610 8.32270 8.36948 8.68060 9.49317 10.03805 10.38708 11.41010 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.005325 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.377050 B = 5256.539124 C = 5813.490805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.097 3.903 5 N -0.603 5.603 6 C 0.536 3.464 7 O -0.504 6.504 8 C -0.100 4.100 9 C -0.142 4.142 10 C -0.150 4.150 11 C 0.526 3.474 12 N -0.859 5.859 13 O -0.496 6.496 14 C 0.081 3.919 15 C 0.171 3.829 16 H 0.074 0.926 17 N -0.707 5.707 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.397 0.603 38 H 0.401 0.599 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 8.082 -15.847 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.026 4.026 5 N -0.337 5.337 6 C 0.321 3.679 7 O -0.377 6.377 8 C -0.106 4.106 9 C -0.199 4.199 10 C -0.207 4.207 11 C 0.308 3.692 12 N -0.425 5.425 13 O -0.367 6.367 14 C -0.045 4.045 15 C 0.058 3.942 16 H 0.092 0.908 17 N -0.347 5.347 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.226 0.774 38 H 0.231 0.769 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.221 0.779 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.113 7.589 -14.847 16.962 hybrid contribution -0.396 -0.775 0.161 0.885 sum 2.716 6.814 -14.685 16.415 Atomic orbital electron populations 1.21598 0.93475 1.02917 1.00851 1.22547 0.97004 0.98615 0.95474 0.90254 1.22486 0.88237 0.94613 0.97225 1.48208 1.29619 1.44129 1.11764 1.19364 0.83363 0.79009 0.86177 1.90817 1.24217 1.50499 1.72203 1.20812 0.96922 0.97782 0.95125 1.21916 0.94067 1.01033 1.02887 1.22163 1.04036 0.94946 0.99579 1.19947 0.87447 0.80007 0.81764 1.43820 1.25465 1.58976 1.14272 1.90887 1.29220 1.53925 1.62633 1.23289 1.00172 1.00800 0.80224 1.21397 0.88641 0.89882 0.94282 0.90831 1.42312 1.49510 1.32735 1.10174 1.19299 1.20654 1.10012 0.87329 0.90976 1.24710 0.99432 0.98731 0.97657 1.69652 1.30587 1.25940 1.31725 0.86132 0.77141 0.78891 0.84107 1.20493 1.21898 1.21900 0.92140 0.93872 0.91262 0.91174 0.91663 0.89926 0.91372 0.91139 0.91632 0.91457 0.89529 0.77423 0.76864 0.93034 0.90196 0.77950 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.71 37.16 0.32 -1.54 16 2 C -0.12 -1.65 3.42 -88.79 -0.30 -1.96 16 3 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 4 C 0.10 1.31 4.57 -3.07 -0.01 1.30 16 5 N -0.60 -10.41 3.32 -170.52 -0.57 -10.97 16 6 C 0.54 10.12 6.51 -10.99 -0.07 10.05 16 7 O -0.50 -12.08 14.51 -18.92 -0.27 -12.36 16 8 C -0.10 -1.37 0.59 -156.81 -0.09 -1.47 16 9 C -0.14 -1.75 8.22 37.16 0.31 -1.44 16 10 C -0.15 -1.44 7.55 37.16 0.28 -1.16 16 11 C 0.53 7.83 6.74 -10.99 -0.07 7.76 16 12 N -0.86 -7.83 8.51 31.22 0.27 -7.57 16 13 O -0.50 -10.24 15.04 -18.91 -0.28 -10.52 16 14 C 0.08 1.52 6.58 -2.52 -0.02 1.50 16 15 C 0.17 3.15 3.47 -65.78 -0.23 2.92 16 16 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 17 N -0.71 -16.51 4.59 -51.35 -0.24 -16.75 16 18 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.17 6.48 -51.93 -0.34 0.84 16 29 H 0.07 0.94 5.19 -51.92 -0.27 0.67 16 30 H 0.07 0.70 5.87 -51.93 -0.30 0.39 16 31 H 0.08 1.01 5.31 -51.93 -0.28 0.73 16 32 H 0.07 0.58 7.47 -51.93 -0.39 0.19 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.69 8.04 -51.93 -0.42 0.28 16 35 H 0.07 0.45 7.21 -51.93 -0.37 0.08 16 36 H 0.09 0.72 4.95 -51.93 -0.26 0.46 16 37 H 0.40 2.27 7.54 -40.82 -0.31 1.96 16 38 H 0.40 3.18 8.93 -40.82 -0.36 2.82 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 41 H 0.39 9.51 6.38 -40.82 -0.26 9.25 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -36.28 328.14 -6.64 -42.92 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.06 Total: 10.59 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -0.14 Total: 9.00 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.19 Total: -61.83 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.56 Total: -22.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.28 -6.64 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054759162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.077 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds