Wall clock time and date at job start Tue Mar 31 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.63805 * 2 1 4 4 C 1.54317 * 110.72527 * 236.66656 * 2 1 3 5 5 N 1.47019 * 107.27430 * 219.44355 * 4 2 1 6 6 C 1.34776 * 125.64942 * 178.89486 * 5 4 2 7 7 O 1.21280 * 119.99846 * 174.37298 * 6 5 4 8 8 C 1.50697 * 120.00149 * 354.37058 * 6 5 4 9 9 C 1.53002 * 109.47068 * 293.67368 * 8 6 5 10 10 C 1.53005 * 109.46994 * 53.67370 * 8 6 5 11 11 C 1.50695 * 109.47206 * 173.67265 * 8 6 5 12 12 N 1.34773 * 120.00213 * 180.02562 * 11 8 6 13 13 O 1.21279 * 120.00109 * 359.97438 * 11 8 6 14 14 C 1.47425 * 108.70101 * 358.93477 * 5 4 2 15 15 C 1.54918 * 104.82960 * 24.13215 * 14 5 4 16 16 H 1.09001 * 111.03502 * 204.89681 * 15 14 5 17 17 N 1.46499 * 111.00320 * 81.06519 * 15 14 5 18 18 C 1.36938 * 120.00401 * 92.80402 * 17 15 14 19 19 H 1.08004 * 119.99721 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99981 * 179.72422 * 18 17 15 21 21 N 1.31616 * 120.00177 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99711 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47360 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47386 * 119.99983 * 22 20 18 25 25 H 1.48497 * 109.46967 * 239.99624 * 22 20 18 26 26 H 1.08994 * 109.47513 * 296.85746 * 1 2 3 27 27 H 1.09006 * 109.46837 * 56.86159 * 1 2 3 28 28 H 1.09000 * 109.46901 * 176.85434 * 1 2 3 29 29 H 1.09008 * 109.88111 * 338.86046 * 4 2 1 30 30 H 1.09001 * 109.88625 * 100.01978 * 4 2 1 31 31 H 1.08999 * 109.47309 * 63.35729 * 9 8 6 32 32 H 1.08999 * 109.46995 * 183.35713 * 9 8 6 33 33 H 1.08999 * 109.47126 * 303.35467 * 9 8 6 34 34 H 1.09000 * 109.46942 * 44.67542 * 10 8 6 35 35 H 1.08997 * 109.47163 * 164.67993 * 10 8 6 36 36 H 1.09007 * 109.46667 * 284.67547 * 10 8 6 37 37 H 0.97007 * 119.99989 * 0.02562 * 12 11 8 38 38 H 0.97006 * 120.00663 * 179.97438 * 12 11 8 39 39 H 1.08989 * 110.37040 * 265.29404 * 14 5 4 40 40 H 1.09003 * 110.36740 * 142.96652 * 14 5 4 41 41 H 0.97003 * 119.99440 * 272.80122 * 17 15 14 42 42 H 0.96998 * 120.00191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7931 -1.2059 5 7 3.2446 -1.5518 -0.7363 6 6 3.9915 -2.3871 -1.4853 7 8 4.9959 -2.8837 -1.0210 8 6 3.5787 -2.7040 -2.8996 9 6 2.2678 -3.4927 -2.8836 10 6 3.3807 -1.4012 -3.6771 11 6 4.6522 -3.5271 -3.5637 12 7 4.4994 -3.9297 -4.8408 13 8 5.6540 -3.8265 -2.9493 14 6 3.4634 -1.2484 0.6897 15 6 2.0789 -0.7933 1.2151 16 1 2.1842 -0.1484 2.0875 17 7 1.2272 -1.9462 1.5177 18 6 1.2021 -2.4653 2.7847 19 1 1.8107 -2.0250 3.5607 20 6 0.3908 -3.5541 3.0727 21 7 -0.3549 -4.0873 2.1282 22 14 0.3561 -4.2617 4.8011 23 1 1.2773 -3.4878 5.6714 24 1 -1.0241 -4.1784 5.3426 25 1 0.7880 -5.6820 4.7632 26 1 -0.3634 0.4642 0.9167 27 1 -0.3633 0.5618 -0.8606 28 1 -0.3633 -1.0261 -0.0564 29 1 1.3130 -1.4784 -1.5751 30 1 2.3741 -0.1057 -1.9975 31 1 1.4773 -2.8751 -2.4574 32 1 2.0002 -3.7733 -3.9023 33 1 2.3919 -4.3917 -2.2798 34 1 4.2069 -0.7225 -3.4652 35 1 3.3520 -1.6163 -4.7452 36 1 2.4421 -0.9367 -3.3746 37 1 3.6985 -3.6893 -5.3326 38 1 5.1905 -4.4592 -5.2685 39 1 4.1931 -0.4463 0.7993 40 1 3.7961 -2.1404 1.2206 41 1 0.6809 -2.3418 0.8206 42 1 -0.9222 -4.8479 2.3296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054759162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:03 Heat of formation + Delta-G solvation = -79.908306 kcal Electronic energy + Delta-G solvation = -24021.469827 eV Core-core repulsion = 20614.911622 eV Total energy + Delta-G solvation = -3406.558205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.97172 -40.24372 -38.62577 -36.44394 -35.50111 -34.14999 -33.46449 -32.17352 -29.43396 -28.45399 -27.35652 -25.90074 -25.26757 -23.71723 -21.79181 -20.67303 -20.22178 -19.38081 -18.44048 -17.74763 -17.24234 -16.91603 -16.48797 -16.19431 -15.99975 -15.59712 -15.24261 -15.00389 -14.70340 -14.55467 -14.19304 -13.94550 -13.61859 -13.43915 -13.32026 -13.04011 -12.91540 -12.88462 -12.80582 -12.66648 -12.30087 -12.17280 -12.07387 -11.89747 -11.42790 -11.28020 -11.03169 -11.00040 -10.63225 -10.36457 -9.56671 -8.93675 -7.95184 -5.20738 1.44276 1.46955 1.54776 1.55523 1.72132 1.92666 2.54966 2.60822 3.29565 3.40865 3.64287 3.71301 3.88126 3.93161 3.96450 4.14121 4.18689 4.40839 4.55021 4.61840 4.68117 4.71277 4.73451 4.77345 4.80040 4.95518 4.98334 5.05272 5.18266 5.22248 5.30115 5.34603 5.47829 5.53734 5.69860 5.91961 6.28252 6.44494 6.65426 7.22111 7.36016 7.41841 8.11476 8.34859 9.28023 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.005325 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.377050 B = 5256.539124 C = 5813.490805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 H 0.116 0.884 4 C 0.093 3.907 5 N -0.602 5.602 6 C 0.519 3.481 7 O -0.570 6.570 8 C -0.092 4.092 9 C -0.138 4.138 10 C -0.145 4.145 11 C 0.520 3.480 12 N -0.827 5.827 13 O -0.565 6.565 14 C 0.084 3.916 15 C 0.161 3.839 16 H 0.077 0.923 17 N -0.715 5.715 18 C -0.238 4.238 19 H 0.073 0.927 20 C -0.069 4.069 21 N -0.963 5.963 22 Si 0.962 3.038 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.303 1.303 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.419 0.581 38 H 0.410 0.590 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.378 0.622 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 10.431 -18.501 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.121 4.121 3 H 0.134 0.866 4 C -0.028 4.028 5 N -0.335 5.335 6 C 0.306 3.694 7 O -0.448 6.448 8 C -0.099 4.099 9 C -0.195 4.195 10 C -0.202 4.202 11 C 0.303 3.697 12 N -0.394 5.394 13 O -0.442 6.442 14 C -0.043 4.043 15 C 0.050 3.950 16 H 0.095 0.905 17 N -0.354 5.354 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.262 4.262 21 N -0.614 5.614 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.216 1.216 25 H -0.231 1.231 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.252 0.748 38 H 0.242 0.758 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.211 0.789 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.871 10.004 -17.567 20.302 hybrid contribution 0.018 -1.457 0.951 1.740 sum 1.889 8.548 -16.616 18.781 Atomic orbital electron populations 1.21528 0.93199 1.01388 1.02083 1.22549 0.97069 0.99677 0.92841 0.86592 1.22808 0.86930 0.95050 0.98015 1.48330 1.30308 1.44038 1.10843 1.20445 0.82584 0.78078 0.88251 1.90781 1.27207 1.52818 1.74016 1.20827 0.96761 1.00161 0.92119 1.21957 0.93283 0.99171 1.05118 1.22239 1.04648 0.92156 1.01179 1.20264 0.86754 0.79706 0.82938 1.43518 1.26361 1.57220 1.12291 1.90868 1.31968 1.56720 1.64651 1.23084 1.00733 0.99042 0.81398 1.21646 0.87848 0.88876 0.96647 0.90491 1.42401 1.50109 1.34069 1.08829 1.19645 1.19171 1.09435 0.88733 0.90915 1.25385 1.00232 0.99786 1.00786 1.69776 1.31857 1.26547 1.33230 0.85232 0.77180 0.77496 0.80833 1.19356 1.21630 1.23053 0.93355 0.89829 0.94453 0.90651 0.87155 0.89477 0.86607 0.95120 0.92409 0.87586 0.87481 0.74833 0.75808 0.91002 0.95424 0.78863 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 8.71 71.98 0.63 -2.55 16 2 C -0.10 -2.56 3.42 -9.61 -0.03 -2.60 16 3 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 4 C 0.09 2.21 4.57 86.73 0.40 2.60 16 5 N -0.60 -20.48 3.32 -811.80 -2.70 -23.18 16 6 C 0.52 19.93 6.51 87.66 0.57 20.50 16 7 O -0.57 -29.06 14.51 20.37 0.30 -28.76 16 8 C -0.09 -2.39 0.59 -53.67 -0.03 -2.42 16 9 C -0.14 -3.13 8.22 71.98 0.59 -2.53 16 10 C -0.15 -2.15 7.55 71.98 0.54 -1.60 16 11 C 0.52 15.10 6.74 87.66 0.59 15.69 16 12 N -0.83 -12.79 8.51 -173.54 -1.48 -14.27 16 13 O -0.57 -24.31 15.04 20.37 0.31 -24.01 16 14 C 0.08 3.21 6.58 86.86 0.57 3.78 16 15 C 0.16 5.85 3.47 46.38 0.16 6.01 16 16 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 17 N -0.71 -33.94 4.59 -316.37 -1.45 -35.39 16 18 C -0.24 -12.98 9.96 84.03 0.84 -12.15 16 19 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.96 -57.93 13.06 21.65 0.28 -57.65 16 22 Si 0.96 46.84 29.55 68.60 2.03 48.87 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.04 1.20 6.48 -2.39 -0.02 1.19 16 29 H 0.08 1.76 5.19 -2.38 -0.01 1.75 16 30 H 0.11 1.72 5.87 -2.39 -0.01 1.70 16 31 H 0.09 1.90 5.31 -2.39 -0.01 1.89 16 32 H 0.12 1.47 7.47 -2.39 -0.02 1.45 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.00 8.04 -2.39 -0.02 0.98 16 35 H 0.11 0.78 7.21 -2.39 -0.02 0.76 16 36 H 0.11 1.14 4.95 -2.38 -0.01 1.13 16 37 H 0.42 2.82 7.54 -92.70 -0.70 2.12 16 38 H 0.41 5.55 8.93 -92.70 -0.83 4.72 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 41 H 0.38 19.02 6.38 -92.71 -0.59 18.43 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -87.80 328.14 1.53 -86.28 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -1.05 Total: 26.87 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 5.29 Total: 21.24 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.35 Total: -130.49 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: 0.60 Total: -52.77 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -87.80 1.53 -86.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054759162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.367 kcal (2) G-P(sol) polarization free energy of solvation -87.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds