Wall clock time and date at job start Tue Mar 31 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21278 * 120.00191 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99991 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.47227 * 179.97438 * 5 3 2 7 7 O 1.21277 * 119.99833 * 0.02562 * 6 5 3 8 8 N 1.34773 * 120.00068 * 179.97438 * 6 5 3 9 9 C 1.46500 * 119.99996 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47137 * 180.02562 * 9 8 6 11 11 H 1.09000 * 110.88991 * 51.11076 * 10 9 8 12 12 C 1.54911 * 110.99893 * 287.19531 * 10 9 8 13 13 N 1.47433 * 104.83032 * 204.91686 * 12 10 9 14 14 C 1.36937 * 125.64919 * 204.08382 * 13 12 10 15 15 H 1.07997 * 119.99663 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00195 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99822 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00111 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47408 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47320 * 119.99912 * 18 16 14 21 21 H 1.48507 * 109.46931 * 239.99693 * 18 16 14 22 22 C 1.47016 * 108.70278 * 24.12787 * 13 12 10 23 23 C 1.54328 * 107.27321 * 358.94395 * 22 13 12 24 24 H 1.09000 * 110.72485 * 96.16524 * 23 22 13 25 25 C 1.53000 * 110.87087 * 219.37403 * 23 22 13 26 26 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 27 27 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 29 29 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47113 * 299.99858 * 5 3 2 31 31 H 1.09002 * 109.47152 * 59.99940 * 5 3 2 32 32 H 0.96998 * 119.99906 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47197 * 299.99794 * 9 8 6 34 34 H 1.08992 * 109.47610 * 60.00070 * 9 8 6 35 35 H 1.09000 * 110.37219 * 323.75328 * 12 10 9 36 36 H 1.08995 * 110.36922 * 86.07959 * 12 10 9 37 37 H 0.96998 * 119.99511 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.88536 * 239.52770 * 22 13 12 39 39 H 1.08999 * 109.88423 * 118.35434 * 22 13 12 40 40 H 1.09006 * 109.47275 * 173.60589 * 25 23 22 41 41 H 1.08998 * 109.47488 * 293.60511 * 25 23 22 42 42 H 1.09000 * 109.47135 * 53.60623 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1482 2.5881 -0.0002 7 8 3.3600 3.5098 -0.0006 8 7 5.4732 2.8344 0.0007 9 6 5.9615 4.2156 0.0005 10 6 7.4916 4.2156 0.0010 11 1 7.8805 3.5761 -0.7914 12 6 8.0463 3.7884 1.3828 13 7 9.3882 4.3949 1.4547 14 6 10.4248 3.9495 2.2308 15 1 10.2938 3.0820 2.8606 16 6 11.6438 4.6130 2.2080 17 7 11.8035 5.6699 1.4400 18 14 13.0580 4.0050 3.2662 19 1 12.6248 2.8084 4.0316 20 1 14.2083 3.6479 2.3976 21 1 13.4650 5.0759 4.2112 22 6 9.4288 5.5576 0.5559 23 6 8.0477 5.6586 -0.1254 24 1 7.4081 6.3660 0.4025 25 6 8.1930 6.0559 -1.5957 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.9500 -0.8401 0.0004 30 1 4.0089 0.6536 0.8909 31 1 4.0096 0.6532 -0.8891 32 1 6.1035 2.0971 0.0014 33 1 5.5989 4.7291 -0.8899 34 1 5.5976 4.7298 0.8900 35 1 7.4127 4.1737 2.1817 36 1 8.1170 2.7025 1.4440 37 1 12.6555 6.1333 1.4239 38 1 10.2041 5.4171 -0.1972 39 1 9.6261 6.4630 1.1297 40 1 7.2186 6.0102 -2.0824 41 1 8.5844 7.0711 -1.6609 42 1 8.8793 5.3694 -2.0915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101908494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:50 Heat of formation + Delta-G solvation = -52.620328 kcal Electronic energy + Delta-G solvation = -22282.629306 eV Core-core repulsion = 18877.254397 eV Total energy + Delta-G solvation = -3405.374909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33255 -38.90844 -37.83171 -34.85631 -34.42626 -32.94083 -31.31467 -30.71761 -29.04001 -26.73350 -25.88976 -24.92655 -22.82640 -21.21905 -20.39349 -19.97398 -19.16473 -17.54357 -17.26093 -16.70222 -16.17499 -15.66804 -15.60342 -14.96024 -14.69767 -14.20484 -13.83530 -13.62563 -13.52193 -13.30383 -12.95556 -12.84776 -12.56780 -12.49624 -12.13915 -11.74972 -11.62282 -11.37586 -11.19585 -10.81806 -10.77392 -10.28751 -10.10882 -9.97062 -9.91021 -9.82135 -9.59561 -9.37332 -9.35011 -8.86527 -8.60663 -6.82742 -5.71380 -3.04885 2.46435 2.72844 2.77573 3.38855 3.44136 3.45719 3.46837 4.36281 4.48742 4.72987 4.90798 4.95710 5.05877 5.17058 5.21563 5.25145 5.35803 5.50125 5.54157 5.58598 5.79267 5.90704 6.05170 6.11258 6.14945 6.20854 6.31638 6.50120 6.51884 6.58840 6.64703 6.78987 6.96571 7.18193 7.57117 7.60438 7.65712 7.84380 8.05320 8.26193 8.37798 9.22084 9.82510 10.48874 11.40251 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.003084 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.681865 B = 9077.989756 C = 9879.529935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.743 5.743 3 C 0.510 3.490 4 O -0.491 6.491 5 C -0.167 4.167 6 C 0.509 3.491 7 O -0.502 6.502 8 N -0.728 5.728 9 C 0.134 3.866 10 C -0.112 4.112 11 H 0.080 0.920 12 C 0.142 3.858 13 N -0.607 5.607 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.184 3.816 23 C -0.111 4.111 24 H 0.067 0.933 25 C -0.134 4.134 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.400 0.600 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.019 0.981 36 H 0.035 0.965 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.204 -12.633 -5.724 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.398 5.398 3 C 0.294 3.706 4 O -0.362 6.362 5 C -0.210 4.210 6 C 0.292 3.708 7 O -0.375 6.375 8 N -0.381 5.381 9 C 0.011 3.989 10 C -0.132 4.132 11 H 0.098 0.902 12 C 0.016 3.984 13 N -0.333 5.333 14 C -0.356 4.356 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.059 3.941 23 C -0.131 4.131 24 H 0.086 0.914 25 C -0.192 4.192 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.029 -11.065 -5.668 21.084 hybrid contribution 1.438 -1.192 0.591 1.959 sum -15.591 -12.257 -5.077 20.472 Atomic orbital electron populations 1.21497 0.79586 1.01997 1.02396 1.45809 1.07727 1.08526 1.77696 1.20095 0.89338 0.83939 0.77253 1.90876 1.69434 1.30443 1.45485 1.21603 0.94557 0.98136 1.06669 1.19883 0.82663 0.90396 0.77870 1.90854 1.54545 1.45371 1.46716 1.46045 1.06451 1.09672 1.75899 1.21371 0.93746 0.81802 1.02008 1.22670 0.91991 0.98758 0.99752 0.90185 1.21586 0.87851 0.96106 0.92895 1.44484 1.07718 1.31157 1.49967 1.19090 0.89407 1.09560 1.17509 0.90465 1.24810 0.97869 0.97892 0.99997 1.69980 1.24074 1.20998 1.41819 0.86053 0.82411 0.77799 0.79535 1.20549 1.21789 1.21777 1.21218 0.90026 0.90537 0.92332 1.22442 0.99994 0.94338 0.96316 0.91433 1.21689 1.00440 1.01350 0.95674 0.92285 0.90760 0.92304 0.76677 0.86020 0.86145 0.76634 0.91719 0.91457 0.96339 0.94649 0.93817 0.93309 0.94067 0.93640 0.92788 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.74 -5.23 5.71 -67.07 -0.38 -5.62 16 3 C 0.51 5.71 7.82 -10.98 -0.09 5.62 16 4 O -0.49 -8.36 14.18 -18.96 -0.27 -8.63 16 5 C -0.17 -1.39 6.19 -29.03 -0.18 -1.57 16 6 C 0.51 6.84 7.82 -10.99 -0.09 6.76 16 7 O -0.50 -9.45 14.18 -18.96 -0.27 -9.72 16 8 N -0.73 -8.89 5.50 -60.30 -0.33 -9.22 16 9 C 0.13 1.97 5.13 -4.04 -0.02 1.95 16 10 C -0.11 -1.83 2.49 -88.47 -0.22 -2.05 16 11 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 12 C 0.14 2.80 6.65 -2.52 -0.02 2.79 16 13 N -0.61 -15.26 3.39 -170.07 -0.58 -15.84 16 14 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 17 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 18 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.18 4.39 4.97 -3.06 -0.02 4.38 16 23 C -0.11 -2.02 3.01 -88.78 -0.27 -2.29 16 24 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 25 C -0.13 -2.10 9.17 37.16 0.34 -1.76 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.40 1.33 8.83 -40.82 -0.36 0.97 16 30 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.40 3.84 8.47 -40.82 -0.35 3.50 16 33 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 35 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 1.29 7.02 -51.93 -0.36 0.92 16 39 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 40 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -37.36 345.03 -8.13 -45.49 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.88 Total: -0.46 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.16 Total: 8.26 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.72 Total: -57.07 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.54 Total: -18.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.36 -8.13 -45.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101908494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.130 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds