Wall clock time and date at job start Tue Mar 31 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21278 * 120.00191 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99991 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.47227 * 179.97438 * 5 3 2 7 7 O 1.21277 * 119.99833 * 0.02562 * 6 5 3 8 8 N 1.34773 * 120.00068 * 179.97438 * 6 5 3 9 9 C 1.46500 * 119.99996 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47137 * 180.02562 * 9 8 6 11 11 H 1.09000 * 110.88991 * 51.11076 * 10 9 8 12 12 C 1.54911 * 110.99893 * 287.19531 * 10 9 8 13 13 N 1.47433 * 104.83032 * 204.91686 * 12 10 9 14 14 C 1.36937 * 125.64919 * 204.08382 * 13 12 10 15 15 H 1.07997 * 119.99663 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00195 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99822 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00111 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47408 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47320 * 119.99912 * 18 16 14 21 21 H 1.48507 * 109.46931 * 239.99693 * 18 16 14 22 22 C 1.47016 * 108.70278 * 24.12787 * 13 12 10 23 23 C 1.54328 * 107.27321 * 358.94395 * 22 13 12 24 24 H 1.09000 * 110.72485 * 96.16524 * 23 22 13 25 25 C 1.53000 * 110.87087 * 219.37403 * 23 22 13 26 26 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 27 27 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 29 29 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47113 * 299.99858 * 5 3 2 31 31 H 1.09002 * 109.47152 * 59.99940 * 5 3 2 32 32 H 0.96998 * 119.99906 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47197 * 299.99794 * 9 8 6 34 34 H 1.08992 * 109.47610 * 60.00070 * 9 8 6 35 35 H 1.09000 * 110.37219 * 323.75328 * 12 10 9 36 36 H 1.08995 * 110.36922 * 86.07959 * 12 10 9 37 37 H 0.96998 * 119.99511 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.88536 * 239.52770 * 22 13 12 39 39 H 1.08999 * 109.88423 * 118.35434 * 22 13 12 40 40 H 1.09006 * 109.47275 * 173.60589 * 25 23 22 41 41 H 1.08998 * 109.47488 * 293.60511 * 25 23 22 42 42 H 1.09000 * 109.47135 * 53.60623 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1482 2.5881 -0.0002 7 8 3.3600 3.5098 -0.0006 8 7 5.4732 2.8344 0.0007 9 6 5.9615 4.2156 0.0005 10 6 7.4916 4.2156 0.0010 11 1 7.8805 3.5761 -0.7914 12 6 8.0463 3.7884 1.3828 13 7 9.3882 4.3949 1.4547 14 6 10.4248 3.9495 2.2308 15 1 10.2938 3.0820 2.8606 16 6 11.6438 4.6130 2.2080 17 7 11.8035 5.6699 1.4400 18 14 13.0580 4.0050 3.2662 19 1 12.6248 2.8084 4.0316 20 1 14.2083 3.6479 2.3976 21 1 13.4650 5.0759 4.2112 22 6 9.4288 5.5576 0.5559 23 6 8.0477 5.6586 -0.1254 24 1 7.4081 6.3660 0.4025 25 6 8.1930 6.0559 -1.5957 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.9500 -0.8401 0.0004 30 1 4.0089 0.6536 0.8909 31 1 4.0096 0.6532 -0.8891 32 1 6.1035 2.0971 0.0014 33 1 5.5989 4.7291 -0.8899 34 1 5.5976 4.7298 0.8900 35 1 7.4127 4.1737 2.1817 36 1 8.1170 2.7025 1.4440 37 1 12.6555 6.1333 1.4239 38 1 10.2041 5.4171 -0.1972 39 1 9.6261 6.4630 1.1297 40 1 7.2186 6.0102 -2.0824 41 1 8.5844 7.0711 -1.6609 42 1 8.8793 5.3694 -2.0915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101908494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:50 Heat of formation + Delta-G solvation = -81.299760 kcal Electronic energy + Delta-G solvation = -22283.872939 eV Core-core repulsion = 18877.254397 eV Total energy + Delta-G solvation = -3406.618543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27884 -40.06713 -39.23874 -36.00427 -35.45181 -34.62051 -32.53274 -32.21701 -30.38785 -27.89469 -27.33316 -26.34997 -24.42269 -22.25107 -21.55845 -21.38250 -20.59537 -18.85997 -18.32720 -18.06863 -17.09963 -16.89223 -16.58399 -16.34543 -15.96394 -15.58055 -15.53756 -14.77077 -14.55899 -14.38832 -14.26214 -14.10956 -13.91415 -13.42527 -13.27628 -13.08702 -13.03582 -12.87178 -12.76966 -12.64287 -12.38131 -11.88794 -11.82327 -11.54072 -11.39761 -11.34575 -11.11857 -10.70233 -10.45496 -10.05856 -9.98343 -8.87587 -7.82940 -5.18535 1.46923 1.48112 1.58213 1.67793 1.79745 1.96073 2.50811 2.63561 3.35342 3.60347 3.64274 3.79781 3.96946 3.97923 4.11733 4.40223 4.43981 4.46856 4.51804 4.56137 4.62537 4.65525 4.76183 4.86508 4.88770 4.98480 5.00012 5.10624 5.18449 5.35755 5.43353 5.49611 5.50788 5.56088 5.72924 5.83412 6.22099 6.61571 6.68688 7.12238 7.33437 7.46675 7.80218 8.45026 9.27636 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.003084 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.681865 B = 9077.989756 C = 9879.529935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.501 3.499 4 O -0.561 6.561 5 C -0.153 4.153 6 C 0.503 3.497 7 O -0.562 6.562 8 N -0.716 5.716 9 C 0.146 3.854 10 C -0.087 4.087 11 H 0.094 0.906 12 C 0.138 3.862 13 N -0.630 5.630 14 C -0.238 4.238 15 H 0.086 0.914 16 C -0.070 4.070 17 N -0.953 5.953 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.292 1.292 21 H -0.297 1.297 22 C 0.192 3.808 23 C -0.104 4.104 24 H 0.069 0.931 25 C -0.127 4.127 26 H 0.042 0.958 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.422 0.578 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.055 0.945 37 H 0.245 0.755 38 H 0.018 0.982 39 H -0.003 1.003 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.798 -15.871 -6.146 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.286 3.714 4 O -0.438 6.438 5 C -0.195 4.195 6 C 0.289 3.711 7 O -0.439 6.439 8 N -0.370 5.370 9 C 0.021 3.979 10 C -0.107 4.107 11 H 0.112 0.888 12 C 0.013 3.987 13 N -0.356 5.356 14 C -0.367 4.367 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.602 5.602 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.219 1.219 21 H -0.224 1.224 22 C 0.067 3.933 23 C -0.124 4.124 24 H 0.087 0.913 25 C -0.184 4.184 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.179 0.821 31 H 0.182 0.818 32 H 0.253 0.747 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.015 0.985 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.622 -14.424 -6.088 23.572 hybrid contribution 1.575 -0.234 0.758 1.763 sum -16.047 -14.658 -5.330 22.378 Atomic orbital electron populations 1.21610 0.79318 1.04108 1.00923 1.45681 1.08045 1.08473 1.75573 1.20685 0.90651 0.83865 0.76186 1.90861 1.70903 1.33035 1.49021 1.21650 0.92348 0.94999 1.10527 1.20753 0.82139 0.92047 0.76194 1.90847 1.55974 1.47696 1.49354 1.45895 1.06751 1.09069 1.75247 1.21056 0.92002 0.83410 1.01402 1.22457 0.93004 0.97229 0.98008 0.88764 1.21773 0.85383 0.96926 0.94645 1.44823 1.09223 1.31793 1.49752 1.19519 0.90207 1.09496 1.17475 0.89668 1.25676 1.00571 0.98378 1.01684 1.70211 1.24172 1.22315 1.43512 0.85008 0.79037 0.77534 0.77744 1.18682 1.21880 1.22401 1.20964 0.92595 0.88603 0.91126 1.22324 0.96515 0.96001 0.97542 0.91277 1.21630 1.01971 1.01149 0.93673 0.93932 0.86756 0.93764 0.74076 0.82144 0.81751 0.74679 0.91411 0.93204 0.96830 0.92671 0.94549 0.96401 0.98505 0.90785 0.92918 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.70 127.77 1.37 2.33 16 2 N -0.72 -8.14 5.71 -484.51 -2.77 -10.91 16 3 C 0.50 10.27 7.82 87.66 0.69 10.95 16 4 O -0.56 -19.37 14.18 20.42 0.29 -19.08 16 5 C -0.15 -1.96 6.19 29.10 0.18 -1.78 16 6 C 0.50 12.45 7.82 87.66 0.69 13.14 16 7 O -0.56 -21.13 14.18 20.42 0.29 -20.84 16 8 N -0.72 -15.41 5.50 -463.07 -2.55 -17.96 16 9 C 0.15 4.00 5.13 86.38 0.44 4.45 16 10 C -0.09 -2.70 2.49 -9.40 -0.02 -2.72 16 11 H 0.09 2.71 8.05 -2.39 -0.02 2.69 16 12 C 0.14 5.26 6.65 86.85 0.58 5.83 16 13 N -0.63 -31.87 3.39 -691.99 -2.35 -34.22 16 14 C -0.24 -13.15 10.28 84.03 0.86 -12.29 16 15 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 17 N -0.95 -57.68 10.31 21.65 0.22 -57.46 16 18 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 22 C 0.19 9.48 4.97 86.73 0.43 9.92 16 23 C -0.10 -3.75 3.01 -9.60 -0.03 -3.78 16 24 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 25 C -0.13 -3.81 9.17 71.98 0.66 -3.15 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.42 0.99 8.83 -92.71 -0.82 0.17 16 30 H 0.16 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.17 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.42 6.25 8.47 -92.71 -0.79 5.46 16 33 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 34 H 0.05 1.57 7.96 -2.39 -0.02 1.55 16 35 H 0.01 0.55 7.91 -2.39 -0.02 0.53 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.02 0.98 7.02 -2.39 -0.02 0.96 16 39 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 16 40 H 0.07 1.83 8.09 -2.38 -0.02 1.81 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.58 8.07 -2.39 -0.02 1.57 16 Total: -1.00 -87.67 345.03 0.89 -86.78 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -0.58 Total: 6.79 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.31 Total: 19.36 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -7.44 Total: -120.54 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: 0.58 Total: -39.92 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -87.67 0.89 -86.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101908494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.481 kcal (2) G-P(sol) polarization free energy of solvation -87.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds