Wall clock time and date at job start Tue Mar 31 2020 02:49:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 O 1.21278 * 119.99985 * 2 1
4 4 N 1.34779 * 119.99944 * 179.97438 * 2 1 3
5 5 C 1.46499 * 119.99872 * 180.02562 * 4 2 1
6 6 C 1.50701 * 109.46992 * 179.97438 * 5 4 2
7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4
8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4
9 9 C 1.47487 * 127.02821 * 179.97438 * 8 6 5
10 10 C 1.54005 * 107.07988 * 154.52318 * 9 8 6
11 11 H 1.08996 * 110.32737 * 120.19511 * 10 9 8
12 12 C 1.53003 * 110.32284 * 242.31153 * 10 9 8
13 13 N 1.46498 * 109.46999 * 293.54000 * 12 10 9
14 14 C 1.36934 * 119.99929 * 179.97438 * 13 12 10
15 15 H 1.08005 * 120.00183 * 0.02562 * 14 13 12
16 16 C 1.38819 * 120.00165 * 180.02562 * 14 13 12
17 17 N 1.31614 * 119.99547 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00012 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.47467 * 60.00238 * 18 16 14
20 20 H 1.48497 * 109.46626 * 180.02562 * 18 16 14
21 21 H 1.48497 * 109.47133 * 299.99886 * 18 16 14
22 22 C 1.54622 * 105.04717 * 1.30255 * 10 9 8
23 23 H 1.09003 * 110.74100 * 263.51913 * 22 10 9
24 24 C 1.52998 * 110.73958 * 140.36837 * 22 10 9
25 25 C 1.48112 * 127.03304 * 359.69098 * 8 6 5
26 26 H 1.08998 * 109.46985 * 270.00382 * 1 2 3
27 27 H 1.09000 * 109.47031 * 30.00252 * 1 2 3
28 28 H 1.09004 * 109.46893 * 150.00573 * 1 2 3
29 29 H 0.97000 * 119.99708 * 359.97438 * 4 2 1
30 30 H 1.09002 * 109.47391 * 59.99686 * 5 4 2
31 31 H 1.09001 * 109.46813 * 299.99742 * 5 4 2
32 32 H 1.09004 * 109.91183 * 273.87751 * 9 8 6
33 33 H 1.08998 * 109.91756 * 35.16169 * 9 8 6
34 34 H 1.09004 * 109.47448 * 53.54670 * 12 10 9
35 35 H 1.09010 * 109.46783 * 173.54677 * 12 10 9
36 36 H 0.97001 * 120.00003 * 0.02562 * 13 12 10
37 37 H 0.97002 * 119.99658 * 179.97438 * 17 16 14
38 38 H 1.08998 * 109.46899 * 60.00218 * 24 22 10
39 39 H 1.09002 * 109.46569 * 180.02562 * 24 22 10
40 40 H 1.08998 * 109.47202 * 300.00020 * 24 22 10
41 41 H 1.09002 * 110.66412 * 337.76416 * 25 8 6
42 42 H 1.09002 * 110.66214 * 100.88169 * 25 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1809 -1.1672 0.0005
5 6 3.6459 -1.1672 0.0011
6 6 4.1482 -2.5880 0.0022
7 8 3.3601 -3.5098 0.0021
8 7 5.4733 -2.8343 0.0024
9 6 6.1314 -4.1542 0.0040
10 6 7.5225 -3.9668 -0.6296
11 1 8.3020 -4.2506 0.0774
12 6 7.6395 -4.7965 -1.9098
13 7 7.5999 -6.2218 -1.5733
14 6 7.6883 -7.1621 -2.5648
15 1 7.7877 -6.8530 -3.5949
16 6 7.6502 -8.5126 -2.2460
17 7 7.5286 -8.8892 -0.9908
18 14 7.7716 -9.7953 -3.5985
19 1 9.0592 -9.6334 -4.3203
20 1 7.7063 -11.1529 -3.0004
21 1 6.6452 -9.6195 -4.5501
22 6 7.6157 -2.4580 -0.9546
23 1 7.3504 -2.2700 -1.9950
24 6 9.0165 -1.9235 -0.6496
25 6 6.5664 -1.8348 -0.0048
26 1 -0.3633 0.0001 1.0276
27 1 -0.3633 0.8900 -0.5139
28 1 -0.3633 -0.8901 -0.5138
29 1 1.6959 -2.0072 0.0013
30 1 4.0089 -0.6531 0.8911
31 1 4.0095 -0.6536 -0.8889
32 1 6.2352 -4.5161 1.0270
33 1 5.5473 -4.8611 -0.5852
34 1 6.8100 -4.5570 -2.5752
35 1 8.5821 -4.5667 -2.4069
36 1 7.5102 -6.4993 -0.6482
37 1 7.5016 -9.8329 -0.7680
38 1 9.7491 -2.4593 -1.2531
39 1 9.0588 -0.8601 -0.8852
40 1 9.2392 -2.0702 0.4073
41 1 6.2128 -0.8809 -0.3963
42 1 6.9812 -1.7112 0.9956
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001105767797.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:37
Heat of formation + Delta-G solvation = -65.025881 kcal
Electronic energy + Delta-G solvation = -22344.131680 eV
Core-core repulsion = 18938.218825 eV
Total energy + Delta-G solvation = -3405.912854 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.46166 -39.53446 -38.01410 -34.69287 -34.63501 -32.96462 -31.46821 -30.78247
-29.28525 -27.45974 -26.35350 -25.05182 -23.22825 -21.23236 -20.85608 -20.01653
-19.42775 -17.68485 -17.11588 -16.79412 -16.30207 -16.12649 -15.61985 -15.06802
-14.77175 -14.38232 -14.16680 -13.65941 -13.54365 -13.31740 -13.19425 -12.88824
-12.84431 -12.68486 -12.58569 -12.25020 -11.98153 -11.82312 -11.47626 -11.10649
-10.88143 -10.65667 -10.53600 -10.36316 -10.23522 -10.02998 -9.99712 -9.66959
-9.44546 -8.88766 -8.69834 -6.93843 -5.76738 -3.05822 2.34749 2.48415
2.57623 3.20102 3.44506 3.48798 3.49833 4.20796 4.47434 4.57267
4.58716 4.77770 4.87397 4.94647 5.02552 5.10788 5.13090 5.29278
5.31361 5.41698 5.48421 5.52620 5.57652 5.68326 5.74153 5.92498
6.00363 6.04766 6.11006 6.15368 6.21768 6.37722 6.41427 6.69266
6.82880 7.23224 7.45426 7.69141 7.91822 8.00195 8.41822 9.53063
10.09474 10.44049 11.45999
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.019219 B = 0.003493 C = 0.003095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1456.522895 B = 8014.609502 C = 9045.445865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.513 3.487
3 O -0.552 6.552
4 N -0.719 5.719
5 C 0.104 3.896
6 C 0.524 3.476
7 O -0.536 6.536
8 N -0.614 5.614
9 C 0.112 3.888
10 C -0.103 4.103
11 H 0.088 0.912
12 C 0.163 3.837
13 N -0.732 5.732
14 C -0.242 4.242
15 H 0.069 0.931
16 C -0.012 4.012
17 N -0.933 5.933
18 Si 0.908 3.092
19 H -0.286 1.286
20 H -0.291 1.291
21 H -0.286 1.286
22 C -0.100 4.100
23 H 0.085 0.915
24 C -0.140 4.140
25 C 0.099 3.901
26 H 0.095 0.905
27 H 0.094 0.906
28 H 0.082 0.918
29 H 0.414 0.586
30 H 0.097 0.903
31 H 0.098 0.902
32 H 0.066 0.934
33 H 0.092 0.908
34 H 0.019 0.981
35 H 0.022 0.978
36 H 0.384 0.616
37 H 0.256 0.744
38 H 0.064 0.936
39 H 0.055 0.945
40 H 0.057 0.943
41 H 0.080 0.920
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.561 19.101 4.122 20.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.300 3.700
3 O -0.430 6.430
4 N -0.375 5.375
5 C -0.023 4.023
6 C 0.311 3.689
7 O -0.413 6.413
8 N -0.348 5.348
9 C -0.010 4.010
10 C -0.122 4.122
11 H 0.106 0.894
12 C 0.035 3.965
13 N -0.377 5.377
14 C -0.373 4.373
15 H 0.087 0.913
16 C -0.208 4.208
17 N -0.581 5.581
18 Si 0.738 3.262
19 H -0.213 1.213
20 H -0.217 1.217
21 H -0.213 1.213
22 C -0.120 4.120
23 H 0.103 0.897
24 C -0.197 4.197
25 C -0.024 4.024
26 H 0.113 0.887
27 H 0.113 0.887
28 H 0.101 0.899
29 H 0.252 0.748
30 H 0.115 0.885
31 H 0.116 0.884
32 H 0.085 0.915
33 H 0.111 0.889
34 H 0.037 0.963
35 H 0.040 0.960
36 H 0.217 0.783
37 H 0.066 0.934
38 H 0.083 0.917
39 H 0.074 0.926
40 H 0.076 0.924
41 H 0.098 0.902
42 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -6.648 19.263 3.972 20.761
hybrid contribution -0.056 -1.339 -0.405 1.401
sum -6.705 17.923 3.567 19.466
Atomic orbital electron populations
1.21863 0.91118 1.05108 1.04965 1.20841 0.90803 0.82981 0.75337
1.90722 1.70855 1.31426 1.50010 1.45874 1.06068 1.10093 1.75419
1.21020 0.82278 0.94418 1.04630 1.20034 0.81175 0.90857 0.76815
1.90734 1.54116 1.46012 1.50451 1.48741 1.04285 1.09623 1.72119
1.22236 0.93268 0.84168 1.01350 1.22401 0.96156 0.94191 0.99479
0.89396 1.20696 0.97922 0.85243 0.92630 1.42353 1.88798 0.99089
1.07438 1.19161 1.42501 0.86740 0.88872 0.91285 1.24739 1.02824
0.97037 0.96250 1.69643 1.57153 1.15439 1.15882 0.86262 0.77849
0.81026 0.81015 1.21275 1.21668 1.21262 1.22237 0.95019 0.94884
0.99854 0.89681 1.21729 0.95430 1.00590 1.01991 1.22685 0.87320
0.92060 1.00298 0.88682 0.88721 0.89881 0.74809 0.88526 0.88432
0.91525 0.88944 0.96324 0.95975 0.78251 0.93431 0.91673 0.92584
0.92366 0.90176 0.90433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.08 10.30 36.01 0.37 -0.71 16
2 C 0.51 5.39 7.94 -10.98 -0.09 5.30 16
3 O -0.55 -7.85 17.10 5.56 0.10 -7.76 16
4 N -0.72 -7.52 5.53 -61.47 -0.34 -7.86 16
5 C 0.10 1.12 5.09 -5.19 -0.03 1.09 16
6 C 0.52 7.25 7.96 -10.98 -0.09 7.16 16
7 O -0.54 -9.37 16.00 5.56 0.09 -9.28 16
8 N -0.61 -8.15 3.29 -169.95 -0.56 -8.71 16
9 C 0.11 1.78 6.31 -2.98 -0.02 1.76 16
10 C -0.10 -1.53 2.64 -89.24 -0.24 -1.76 16
11 H 0.09 1.31 7.85 -51.93 -0.41 0.90 16
12 C 0.16 3.16 5.35 -4.04 -0.02 3.14 16
13 N -0.73 -18.28 5.33 -59.90 -0.32 -18.60 16
14 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16
15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16
16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
17 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16
18 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16
19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
20 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
22 C -0.10 -1.11 3.19 -88.91 -0.28 -1.39 16
23 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16
24 C -0.14 -1.28 9.17 37.16 0.34 -0.94 16
25 C 0.10 0.97 6.39 -2.29 -0.01 0.96 16
26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.41 4.16 7.44 -40.82 -0.30 3.86 16
30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.10 0.99 7.90 -51.93 -0.41 0.58 16
32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
33 H 0.09 1.84 7.48 -51.93 -0.39 1.45 16
34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
35 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16
36 H 0.38 10.02 7.51 -40.82 -0.31 9.72 16
37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16
41 H 0.08 0.62 7.23 -51.93 -0.38 0.24 16
42 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16
LS Contribution 349.84 15.07 5.27 5.27
Total: -1.00 -34.81 349.84 -7.16 -41.97
By element:
Atomic # 1 Polarization: 14.52 SS G_CDS: -6.79 Total: 7.73 kcal
Atomic # 6 Polarization: 7.54 SS G_CDS: -0.31 Total: 7.23 kcal
Atomic # 7 Polarization: -62.20 SS G_CDS: -0.49 Total: -62.69 kcal
Atomic # 8 Polarization: -17.22 SS G_CDS: 0.18 Total: -17.04 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -34.81 -7.16 -41.97 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001105767797.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.053 kcal
(2) G-P(sol) polarization free energy of solvation -34.812 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds