Wall clock time and date at job start Tue Mar 31 2020 02:49:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 O 1.21278 * 119.99985 * 2 1
4 4 N 1.34779 * 119.99944 * 179.97438 * 2 1 3
5 5 C 1.46499 * 119.99872 * 180.02562 * 4 2 1
6 6 C 1.50701 * 109.46992 * 179.97438 * 5 4 2
7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4
8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4
9 9 C 1.47487 * 127.02821 * 179.97438 * 8 6 5
10 10 C 1.54005 * 107.07988 * 154.52318 * 9 8 6
11 11 H 1.08996 * 110.32737 * 120.19511 * 10 9 8
12 12 C 1.53003 * 110.32284 * 242.31153 * 10 9 8
13 13 N 1.46498 * 109.46999 * 293.54000 * 12 10 9
14 14 C 1.36934 * 119.99929 * 179.97438 * 13 12 10
15 15 H 1.08005 * 120.00183 * 0.02562 * 14 13 12
16 16 C 1.38819 * 120.00165 * 180.02562 * 14 13 12
17 17 N 1.31614 * 119.99547 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00012 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.47467 * 60.00238 * 18 16 14
20 20 H 1.48497 * 109.46626 * 180.02562 * 18 16 14
21 21 H 1.48497 * 109.47133 * 299.99886 * 18 16 14
22 22 C 1.54622 * 105.04717 * 1.30255 * 10 9 8
23 23 H 1.09003 * 110.74100 * 263.51913 * 22 10 9
24 24 C 1.52998 * 110.73958 * 140.36837 * 22 10 9
25 25 C 1.48112 * 127.03304 * 359.69098 * 8 6 5
26 26 H 1.08998 * 109.46985 * 270.00382 * 1 2 3
27 27 H 1.09000 * 109.47031 * 30.00252 * 1 2 3
28 28 H 1.09004 * 109.46893 * 150.00573 * 1 2 3
29 29 H 0.97000 * 119.99708 * 359.97438 * 4 2 1
30 30 H 1.09002 * 109.47391 * 59.99686 * 5 4 2
31 31 H 1.09001 * 109.46813 * 299.99742 * 5 4 2
32 32 H 1.09004 * 109.91183 * 273.87751 * 9 8 6
33 33 H 1.08998 * 109.91756 * 35.16169 * 9 8 6
34 34 H 1.09004 * 109.47448 * 53.54670 * 12 10 9
35 35 H 1.09010 * 109.46783 * 173.54677 * 12 10 9
36 36 H 0.97001 * 120.00003 * 0.02562 * 13 12 10
37 37 H 0.97002 * 119.99658 * 179.97438 * 17 16 14
38 38 H 1.08998 * 109.46899 * 60.00218 * 24 22 10
39 39 H 1.09002 * 109.46569 * 180.02562 * 24 22 10
40 40 H 1.08998 * 109.47202 * 300.00020 * 24 22 10
41 41 H 1.09002 * 110.66412 * 337.76416 * 25 8 6
42 42 H 1.09002 * 110.66214 * 100.88169 * 25 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1809 -1.1672 0.0005
5 6 3.6459 -1.1672 0.0011
6 6 4.1482 -2.5880 0.0022
7 8 3.3601 -3.5098 0.0021
8 7 5.4733 -2.8343 0.0024
9 6 6.1314 -4.1542 0.0040
10 6 7.5225 -3.9668 -0.6296
11 1 8.3020 -4.2506 0.0774
12 6 7.6395 -4.7965 -1.9098
13 7 7.5999 -6.2218 -1.5733
14 6 7.6883 -7.1621 -2.5648
15 1 7.7877 -6.8530 -3.5949
16 6 7.6502 -8.5126 -2.2460
17 7 7.5286 -8.8892 -0.9908
18 14 7.7716 -9.7953 -3.5985
19 1 9.0592 -9.6334 -4.3203
20 1 7.7063 -11.1529 -3.0004
21 1 6.6452 -9.6195 -4.5501
22 6 7.6157 -2.4580 -0.9546
23 1 7.3504 -2.2700 -1.9950
24 6 9.0165 -1.9235 -0.6496
25 6 6.5664 -1.8348 -0.0048
26 1 -0.3633 0.0001 1.0276
27 1 -0.3633 0.8900 -0.5139
28 1 -0.3633 -0.8901 -0.5138
29 1 1.6959 -2.0072 0.0013
30 1 4.0089 -0.6531 0.8911
31 1 4.0095 -0.6536 -0.8889
32 1 6.2352 -4.5161 1.0270
33 1 5.5473 -4.8611 -0.5852
34 1 6.8100 -4.5570 -2.5752
35 1 8.5821 -4.5667 -2.4069
36 1 7.5102 -6.4993 -0.6482
37 1 7.5016 -9.8329 -0.7680
38 1 9.7491 -2.4593 -1.2531
39 1 9.0588 -0.8601 -0.8852
40 1 9.2392 -2.0702 0.4073
41 1 6.2128 -0.8809 -0.3963
42 1 6.9812 -1.7112 0.9956
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001105767797.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:37
Heat of formation + Delta-G solvation = -91.396485 kcal
Electronic energy + Delta-G solvation = -22345.275195 eV
Core-core repulsion = 18938.218825 eV
Total energy + Delta-G solvation = -3407.056370 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.50768 -40.46851 -39.17046 -36.48135 -35.55009 -34.26425 -33.09583 -31.60344
-30.63530 -28.54716 -27.23233 -26.55527 -24.95095 -22.56441 -21.67493 -21.11070
-20.54645 -19.22420 -18.47303 -17.84476 -17.29612 -17.09243 -16.75437 -16.51643
-16.01093 -15.62534 -15.40448 -15.21543 -14.94887 -14.47980 -14.23440 -13.99288
-13.82742 -13.61211 -13.32421 -13.24418 -13.12755 -12.93456 -12.87778 -12.74018
-12.53195 -12.21152 -11.95779 -11.87932 -11.50743 -11.38828 -11.16539 -11.09085
-10.95307 -10.30847 -9.82818 -9.02610 -7.97218 -5.26193 1.37281 1.45092
1.48436 1.54497 1.58052 1.60542 2.34905 2.54093 3.24134 3.36298
3.51255 3.67285 3.76347 3.91341 4.16957 4.21203 4.24849 4.27721
4.44152 4.52259 4.53377 4.55811 4.65670 4.66888 4.77423 4.86062
4.91696 4.96507 5.05399 5.09201 5.20974 5.23399 5.26289 5.37952
5.46120 5.56089 6.24946 6.39326 6.44724 6.89441 7.12916 7.31357
8.06720 8.29783 9.26034
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.019219 B = 0.003493 C = 0.003095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1456.522895 B = 8014.609502 C = 9045.445865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.511 3.489
3 O -0.592 6.592
4 N -0.720 5.720
5 C 0.112 3.888
6 C 0.520 3.480
7 O -0.581 6.581
8 N -0.614 5.614
9 C 0.117 3.883
10 C -0.093 4.093
11 H 0.091 0.909
12 C 0.164 3.836
13 N -0.745 5.745
14 C -0.249 4.249
15 H 0.073 0.927
16 C -0.074 4.074
17 N -0.968 5.968
18 Si 0.973 3.027
19 H -0.275 1.275
20 H -0.294 1.294
21 H -0.281 1.281
22 C -0.091 4.091
23 H 0.082 0.918
24 C -0.135 4.135
25 C 0.100 3.900
26 H 0.112 0.888
27 H 0.100 0.900
28 H 0.099 0.901
29 H 0.416 0.584
30 H 0.114 0.886
31 H 0.110 0.890
32 H 0.065 0.935
33 H 0.045 0.955
34 H 0.007 0.993
35 H 0.029 0.971
36 H 0.374 0.626
37 H 0.252 0.748
38 H 0.053 0.947
39 H 0.081 0.919
40 H 0.066 0.934
41 H 0.111 0.889
42 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.389 21.214 3.876 22.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.300 3.700
3 O -0.473 6.473
4 N -0.375 5.375
5 C -0.015 4.015
6 C 0.310 3.690
7 O -0.462 6.462
8 N -0.346 5.346
9 C -0.006 4.006
10 C -0.113 4.113
11 H 0.109 0.891
12 C 0.037 3.963
13 N -0.388 5.388
14 C -0.381 4.381
15 H 0.091 0.909
16 C -0.267 4.267
17 N -0.619 5.619
18 Si 0.802 3.198
19 H -0.201 1.201
20 H -0.220 1.220
21 H -0.207 1.207
22 C -0.111 4.111
23 H 0.101 0.899
24 C -0.192 4.192
25 C -0.021 4.021
26 H 0.130 0.870
27 H 0.119 0.881
28 H 0.118 0.882
29 H 0.254 0.746
30 H 0.132 0.868
31 H 0.128 0.872
32 H 0.083 0.917
33 H 0.063 0.937
34 H 0.025 0.975
35 H 0.047 0.953
36 H 0.206 0.794
37 H 0.061 0.939
38 H 0.072 0.928
39 H 0.100 0.900
40 H 0.085 0.915
41 H 0.129 0.871
42 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -6.455 21.427 3.703 22.682
hybrid contribution -0.116 -1.963 -0.345 1.996
sum -6.570 19.464 3.357 20.816
Atomic orbital electron populations
1.21907 0.87864 1.06236 1.06410 1.21548 0.92321 0.82077 0.74023
1.90701 1.71956 1.32617 1.52026 1.45984 1.06041 1.10373 1.75114
1.21025 0.82672 0.91886 1.05920 1.20634 0.80914 0.91757 0.75734
1.90710 1.55314 1.47645 1.52486 1.48818 1.04977 1.09338 1.71482
1.21957 0.93377 0.84948 1.00367 1.22277 0.95430 0.96460 0.97093
0.89082 1.20822 0.97401 0.83132 0.94927 1.42567 1.88632 1.01080
1.06480 1.19580 1.41115 0.87688 0.89712 0.90869 1.25575 1.03487
0.99138 0.98469 1.69803 1.58868 1.15376 1.17815 0.85216 0.78214
0.78034 0.78330 1.20060 1.22017 1.20697 1.22228 0.97041 0.91647
1.00202 0.89935 1.21708 0.93311 1.01848 1.02383 1.22964 0.85622
0.92076 1.01407 0.86958 0.88147 0.88180 0.74598 0.86837 0.87222
0.91712 0.93681 0.97478 0.95292 0.79367 0.93949 0.92803 0.90049
0.91484 0.87068 0.88199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.73 10.30 71.24 0.73 -1.00 16
2 C 0.51 9.94 7.94 87.66 0.70 10.64 16
3 O -0.59 -16.03 17.10 -3.02 -0.05 -16.08 16
4 N -0.72 -14.14 5.53 -466.78 -2.58 -16.72 16
5 C 0.11 2.22 5.09 85.63 0.44 2.65 16
6 C 0.52 14.14 7.96 87.66 0.70 14.84 16
7 O -0.58 -20.84 16.00 -3.03 -0.05 -20.88 16
8 N -0.61 -15.73 3.29 -809.99 -2.67 -18.39 16
9 C 0.12 3.80 6.31 86.53 0.55 4.35 16
10 C -0.09 -2.74 2.64 -9.90 -0.03 -2.76 16
11 H 0.09 2.65 7.85 -2.39 -0.02 2.63 16
12 C 0.16 6.44 5.35 86.38 0.46 6.90 16
13 N -0.74 -38.20 5.33 -343.43 -1.83 -40.03 16
14 C -0.25 -14.19 9.99 84.04 0.84 -13.35 16
15 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16
16 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16
17 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16
18 Si 0.97 46.85 29.55 68.60 2.03 48.88 16
19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16
20 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16
21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
22 C -0.09 -1.81 3.19 -9.68 -0.03 -1.84 16
23 H 0.08 1.71 7.87 -2.39 -0.02 1.69 16
24 C -0.13 -2.04 9.17 71.98 0.66 -1.38 16
25 C 0.10 1.65 6.39 86.63 0.55 2.21 16
26 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.42 8.07 7.44 -92.71 -0.69 7.38 16
30 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16
31 H 0.11 1.94 7.90 -2.39 -0.02 1.92 16
32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16
33 H 0.04 1.90 7.48 -2.39 -0.02 1.88 16
34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16
35 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16
36 H 0.37 20.33 7.51 -92.71 -0.70 19.63 16
37 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16
38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16
41 H 0.11 1.23 7.23 -2.39 -0.02 1.21 16
42 H 0.10 1.29 8.02 -2.39 -0.02 1.27 16
Total: -1.00 -77.81 349.84 0.80 -77.01
By element:
Atomic # 1 Polarization: 29.03 SS G_CDS: -0.36 Total: 28.66 kcal
Atomic # 6 Polarization: 11.34 SS G_CDS: 6.03 Total: 17.38 kcal
Atomic # 7 Polarization: -128.17 SS G_CDS: -6.80 Total: -134.96 kcal
Atomic # 8 Polarization: -36.87 SS G_CDS: -0.10 Total: -36.97 kcal
Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal
Total: -77.81 0.80 -77.01 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001105767797.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal
(2) G-P(sol) polarization free energy of solvation -77.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.011 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds