Wall clock time and date at job start Tue Mar 31 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99725 * 2 1 4 4 O 1.21277 * 119.99954 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99734 * 179.97438 * 3 2 1 6 6 C 1.50703 * 109.47058 * 179.97438 * 5 3 2 7 7 O 1.21273 * 120.00144 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00059 * 180.02562 * 6 5 3 9 9 C 1.46495 * 119.99994 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.50291 * 324.93923 * 9 8 6 11 11 C 1.53042 * 109.52352 * 204.85292 * 9 8 6 12 12 C 1.53075 * 109.66159 * 301.33632 * 11 9 8 13 13 C 1.53194 * 109.29497 * 298.84676 * 12 11 9 14 14 H 1.09005 * 109.58703 * 294.56545 * 13 12 11 15 15 C 1.52994 * 109.58695 * 174.28070 * 13 12 11 16 16 N 1.46925 * 108.89111 * 54.41998 * 13 12 11 17 17 C 1.36942 * 120.62630 * 126.44559 * 16 13 12 18 18 H 1.07992 * 119.99953 * 330.87674 * 17 16 13 19 19 C 1.38813 * 119.99851 * 150.88674 * 17 16 13 20 20 N 1.31619 * 120.00115 * 160.76694 * 19 17 16 21 21 Si 1.86802 * 120.00152 * 340.76030 * 19 17 16 22 22 H 1.48494 * 109.46915 * 92.29207 * 21 19 17 23 23 H 1.48492 * 109.47346 * 212.29675 * 21 19 17 24 24 H 1.48507 * 109.46755 * 332.29248 * 21 19 17 25 25 C 1.46928 * 118.74242 * 306.45845 * 16 13 12 26 26 H 1.09002 * 109.47338 * 299.99656 * 1 2 3 27 27 H 1.08997 * 109.47525 * 60.00129 * 1 2 3 28 28 H 1.09005 * 109.47021 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99761 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47311 * 60.00361 * 5 3 2 31 31 H 1.08996 * 109.47282 * 300.00372 * 5 3 2 32 32 H 0.97001 * 119.99808 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.45831 * 61.42561 * 11 9 8 34 34 H 1.09007 * 109.45814 * 181.39228 * 11 9 8 35 35 H 1.08998 * 109.61908 * 178.83043 * 12 11 9 36 36 H 1.08991 * 109.38836 * 58.72132 * 12 11 9 37 37 H 1.09001 * 109.46978 * 300.28193 * 15 13 12 38 38 H 1.09002 * 109.47228 * 180.28443 * 15 13 12 39 39 H 1.09002 * 109.47394 * 60.28395 * 15 13 12 40 40 H 0.97002 * 120.00266 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.58458 * 173.39187 * 25 16 13 42 42 H 1.08997 * 109.58971 * 293.82524 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1481 2.5881 -0.0002 7 8 3.3601 3.5099 -0.0006 8 7 5.4732 2.8344 -0.0003 9 6 5.9614 4.2156 -0.0017 10 1 5.2899 4.8384 -0.5925 11 6 7.3659 4.2610 -0.6079 12 6 8.3053 3.3628 0.2009 13 6 8.3805 3.8766 1.6422 14 1 8.8499 4.8603 1.6554 15 6 9.2025 2.9047 2.4909 16 7 7.0184 3.9735 2.1844 17 6 6.6919 3.3598 3.3643 18 1 7.2106 2.4626 3.6678 19 6 5.6942 3.8911 4.1700 20 7 5.1158 3.1398 5.0829 21 14 5.1726 5.6723 3.9588 22 1 4.0330 5.7451 3.0096 23 1 4.7584 6.2260 5.2730 24 1 6.3119 6.4619 3.4260 25 6 6.0132 4.7410 1.4365 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8401 -0.0004 30 1 4.0095 0.6533 -0.8892 31 1 4.0088 0.6536 0.8907 32 1 6.1035 2.0971 -0.0004 33 1 7.3277 3.9108 -1.6394 34 1 7.7381 5.2853 -0.5857 35 1 9.3003 3.3794 -0.2437 36 1 7.9219 2.3425 0.1980 37 1 8.7316 1.9218 2.4764 38 1 9.2506 3.2694 3.5170 39 1 10.2111 2.8304 2.0841 40 1 4.4188 3.5111 5.6462 41 1 5.0369 4.6186 1.9055 42 1 6.2886 5.7955 1.4306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131973031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:26 Heat of formation + Delta-G solvation = -44.440344 kcal Electronic energy + Delta-G solvation = -23897.701533 eV Core-core repulsion = 20492.681334 eV Total energy + Delta-G solvation = -3405.020199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01566 -38.92993 -37.43321 -34.46004 -34.03108 -32.69328 -31.46513 -30.66058 -29.87479 -26.64208 -26.00632 -24.78811 -22.67871 -21.43952 -20.39473 -20.03009 -18.85981 -17.15747 -16.99109 -16.34444 -15.74240 -15.56009 -15.17413 -14.93914 -14.42538 -14.23898 -13.71487 -13.47613 -13.34979 -13.24229 -12.88581 -12.73710 -12.43274 -12.27703 -12.02437 -11.81203 -11.55833 -11.46235 -11.24940 -10.93264 -10.49104 -10.38873 -10.26487 -9.91174 -9.82708 -9.62447 -9.32666 -9.02933 -8.96413 -8.63739 -8.30127 -6.84938 -5.88751 -3.25539 2.86164 3.11183 3.27851 3.49320 3.57745 3.59415 3.89264 4.63272 4.77205 4.92380 5.09372 5.20493 5.26229 5.29816 5.33061 5.39408 5.50268 5.51871 5.58666 5.78852 5.81882 5.97822 6.02850 6.15786 6.25400 6.29081 6.33582 6.44530 6.46096 6.50785 6.53288 6.80299 6.96931 7.04722 7.14906 7.53615 8.02885 8.10313 8.39955 8.43863 8.88200 9.00332 9.80405 10.17645 11.26672 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.006396 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.554242 B = 4376.908075 C = 5149.898707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.744 5.744 3 C 0.512 3.488 4 O -0.490 6.490 5 C -0.164 4.164 6 C 0.515 3.485 7 O -0.507 6.507 8 N -0.706 5.706 9 C 0.131 3.869 10 H 0.079 0.921 11 C -0.118 4.118 12 C -0.131 4.131 13 C 0.169 3.831 14 H 0.028 0.972 15 C -0.135 4.135 16 N -0.598 5.598 17 C -0.258 4.258 18 H 0.090 0.910 19 C 0.029 3.971 20 N -0.909 5.909 21 Si 0.874 3.126 22 H -0.283 1.283 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.114 3.886 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.399 0.601 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.396 0.604 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -8.245 -13.193 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.399 5.399 3 C 0.296 3.704 4 O -0.361 6.361 5 C -0.207 4.207 6 C 0.298 3.702 7 O -0.380 6.380 8 N -0.358 5.358 9 C 0.025 3.975 10 H 0.097 0.903 11 C -0.156 4.156 12 C -0.170 4.170 13 C 0.063 3.937 14 H 0.046 0.954 15 C -0.193 4.193 16 N -0.322 5.322 17 C -0.386 4.386 18 H 0.107 0.893 19 C -0.170 4.170 20 N -0.552 5.552 21 Si 0.705 3.295 22 H -0.210 1.210 23 H -0.234 1.234 24 H -0.197 1.197 25 C -0.013 4.013 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.231 0.769 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.325 -6.760 -13.031 14.684 hybrid contribution 0.131 0.123 0.120 0.216 sum 0.455 -6.636 -12.912 14.525 Atomic orbital electron populations 1.21460 0.79881 1.01731 1.02271 1.45792 1.07533 1.08541 1.78030 1.20112 0.89428 0.83840 0.77019 1.90860 1.69448 1.30451 1.45357 1.21562 0.94344 0.98481 1.06332 1.19747 0.82755 0.90216 0.77452 1.90820 1.54615 1.45322 1.47284 1.45746 1.06139 1.08671 1.75278 1.21399 0.94297 0.83195 0.98652 0.90335 1.21693 0.94730 1.00913 0.98307 1.22064 0.98099 0.99230 0.97627 1.20468 0.86242 0.96195 0.90824 0.95408 1.21798 0.96975 0.99817 1.00701 1.44379 1.03942 1.61019 1.22885 1.18820 1.19005 1.05742 0.95029 0.89282 1.25269 0.98195 0.97422 0.96151 1.69793 1.26028 1.35243 1.24180 0.87057 0.78722 0.87986 0.75777 1.21042 1.23352 1.19690 1.21772 0.94872 0.93778 0.90878 0.92319 0.92533 0.90952 0.76809 0.86784 0.85757 0.76944 0.92442 0.91122 0.92441 0.92228 0.92548 0.91808 0.94247 0.92914 0.90102 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 10.70 59.85 0.64 1.57 16 2 N -0.74 -8.40 5.71 -67.08 -0.38 -8.79 16 3 C 0.51 8.25 7.82 -10.99 -0.09 8.16 16 4 O -0.49 -10.72 14.18 -18.96 -0.27 -10.99 16 5 C -0.16 -2.26 6.19 -29.04 -0.18 -2.44 16 6 C 0.51 9.78 7.79 -10.98 -0.09 9.69 16 7 O -0.51 -12.27 13.84 -18.95 -0.26 -12.53 16 8 N -0.71 -12.05 4.92 -53.69 -0.26 -12.32 16 9 C 0.13 2.39 2.81 -67.81 -0.19 2.20 16 10 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 11 C -0.12 -1.70 5.58 -26.67 -0.15 -1.85 16 12 C -0.13 -1.89 5.22 -26.59 -0.14 -2.03 16 13 C 0.17 3.09 3.49 -67.60 -0.24 2.86 16 14 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 15 C -0.14 -2.34 7.94 37.15 0.30 -2.04 16 16 N -0.60 -13.57 2.67 -164.77 -0.44 -14.01 16 17 C -0.26 -6.91 9.04 -15.06 -0.14 -7.05 16 18 H 0.09 2.49 6.39 -52.49 -0.34 2.16 16 19 C 0.03 0.84 5.24 -17.43 -0.09 0.75 16 20 N -0.91 -28.17 13.97 55.49 0.78 -27.40 16 21 Si 0.87 23.73 24.34 -169.99 -4.14 19.59 16 22 H -0.28 -7.97 6.63 56.52 0.37 -7.59 16 23 H -0.31 -8.41 7.11 56.52 0.40 -8.01 16 24 H -0.27 -7.13 6.63 56.52 0.37 -6.76 16 25 C 0.11 2.57 3.80 -3.70 -0.01 2.56 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.40 2.96 8.83 -40.82 -0.36 2.60 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.40 5.74 6.79 -40.82 -0.28 5.47 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.84 6.42 -51.93 -0.33 0.51 16 37 H 0.06 1.00 7.43 -51.93 -0.39 0.61 16 38 H 0.06 1.23 7.64 -51.93 -0.40 0.84 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 41 H 0.08 2.17 4.62 -51.93 -0.24 1.93 16 42 H 0.03 0.67 7.03 -51.93 -0.37 0.30 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -37.91 328.08 -6.91 -44.82 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.50 Total: 4.31 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -0.37 Total: 12.37 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.31 Total: -62.51 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.53 Total: -23.52 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.14 Total: 19.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.91 -6.91 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131973031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.377 kcal (2) G-P(sol) polarization free energy of solvation -37.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds