Wall clock time and date at job start Tue Mar 31 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99725 * 2 1 4 4 O 1.21277 * 119.99954 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99734 * 179.97438 * 3 2 1 6 6 C 1.50703 * 109.47058 * 179.97438 * 5 3 2 7 7 O 1.21273 * 120.00144 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00059 * 180.02562 * 6 5 3 9 9 C 1.46495 * 119.99994 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.50291 * 324.93923 * 9 8 6 11 11 C 1.53042 * 109.52352 * 204.85292 * 9 8 6 12 12 C 1.53075 * 109.66159 * 301.33632 * 11 9 8 13 13 C 1.53194 * 109.29497 * 298.84676 * 12 11 9 14 14 H 1.09005 * 109.58703 * 294.56545 * 13 12 11 15 15 C 1.52994 * 109.58695 * 174.28070 * 13 12 11 16 16 N 1.46925 * 108.89111 * 54.41998 * 13 12 11 17 17 C 1.36942 * 120.62630 * 126.44559 * 16 13 12 18 18 H 1.07992 * 119.99953 * 330.87674 * 17 16 13 19 19 C 1.38813 * 119.99851 * 150.88674 * 17 16 13 20 20 N 1.31619 * 120.00115 * 160.76694 * 19 17 16 21 21 Si 1.86802 * 120.00152 * 340.76030 * 19 17 16 22 22 H 1.48494 * 109.46915 * 92.29207 * 21 19 17 23 23 H 1.48492 * 109.47346 * 212.29675 * 21 19 17 24 24 H 1.48507 * 109.46755 * 332.29248 * 21 19 17 25 25 C 1.46928 * 118.74242 * 306.45845 * 16 13 12 26 26 H 1.09002 * 109.47338 * 299.99656 * 1 2 3 27 27 H 1.08997 * 109.47525 * 60.00129 * 1 2 3 28 28 H 1.09005 * 109.47021 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99761 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47311 * 60.00361 * 5 3 2 31 31 H 1.08996 * 109.47282 * 300.00372 * 5 3 2 32 32 H 0.97001 * 119.99808 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.45831 * 61.42561 * 11 9 8 34 34 H 1.09007 * 109.45814 * 181.39228 * 11 9 8 35 35 H 1.08998 * 109.61908 * 178.83043 * 12 11 9 36 36 H 1.08991 * 109.38836 * 58.72132 * 12 11 9 37 37 H 1.09001 * 109.46978 * 300.28193 * 15 13 12 38 38 H 1.09002 * 109.47228 * 180.28443 * 15 13 12 39 39 H 1.09002 * 109.47394 * 60.28395 * 15 13 12 40 40 H 0.97002 * 120.00266 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.58458 * 173.39187 * 25 16 13 42 42 H 1.08997 * 109.58971 * 293.82524 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1481 2.5881 -0.0002 7 8 3.3601 3.5099 -0.0006 8 7 5.4732 2.8344 -0.0003 9 6 5.9614 4.2156 -0.0017 10 1 5.2899 4.8384 -0.5925 11 6 7.3659 4.2610 -0.6079 12 6 8.3053 3.3628 0.2009 13 6 8.3805 3.8766 1.6422 14 1 8.8499 4.8603 1.6554 15 6 9.2025 2.9047 2.4909 16 7 7.0184 3.9735 2.1844 17 6 6.6919 3.3598 3.3643 18 1 7.2106 2.4626 3.6678 19 6 5.6942 3.8911 4.1700 20 7 5.1158 3.1398 5.0829 21 14 5.1726 5.6723 3.9588 22 1 4.0330 5.7451 3.0096 23 1 4.7584 6.2260 5.2730 24 1 6.3119 6.4619 3.4260 25 6 6.0132 4.7410 1.4365 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8401 -0.0004 30 1 4.0095 0.6533 -0.8892 31 1 4.0088 0.6536 0.8907 32 1 6.1035 2.0971 -0.0004 33 1 7.3277 3.9108 -1.6394 34 1 7.7381 5.2853 -0.5857 35 1 9.3003 3.3794 -0.2437 36 1 7.9219 2.3425 0.1980 37 1 8.7316 1.9218 2.4764 38 1 9.2506 3.2694 3.5170 39 1 10.2111 2.8304 2.0841 40 1 4.4188 3.5111 5.6462 41 1 5.0369 4.6186 1.9055 42 1 6.2886 5.7955 1.4306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131973031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:26 Heat of formation + Delta-G solvation = -75.277348 kcal Electronic energy + Delta-G solvation = -23899.038726 eV Core-core repulsion = 20492.681334 eV Total energy + Delta-G solvation = -3406.357391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39719 -40.31347 -38.95392 -35.84218 -35.45729 -34.47256 -32.85316 -32.53675 -31.12942 -28.02254 -27.26566 -26.46662 -24.37112 -22.74752 -21.89362 -21.28927 -20.46819 -18.54862 -18.32771 -18.07071 -17.27807 -16.92745 -16.56970 -16.50095 -15.97868 -15.71412 -15.25213 -15.07730 -14.69963 -14.56331 -14.35696 -14.23092 -13.90496 -13.74583 -13.43545 -13.22386 -13.06610 -12.84846 -12.60265 -12.51695 -12.37578 -12.10336 -11.80977 -11.62068 -11.35699 -11.17220 -11.09559 -10.70768 -10.44940 -10.08932 -9.92003 -8.78978 -8.15736 -5.42603 1.26182 1.31322 1.36172 1.65294 1.81975 2.03121 2.41212 2.67138 3.07941 3.33568 3.62425 3.91242 4.03488 4.11562 4.15928 4.33754 4.36983 4.45224 4.51575 4.57584 4.61995 4.62138 4.70128 4.84054 4.90401 4.94150 5.03229 5.06949 5.14518 5.24016 5.32288 5.48142 5.56870 5.66240 5.71154 5.94563 6.21110 6.59875 6.75159 6.97032 7.34061 7.51985 7.69268 8.10995 9.03339 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.006396 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.554242 B = 4376.908075 C = 5149.898707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.722 5.722 3 C 0.501 3.499 4 O -0.561 6.561 5 C -0.153 4.153 6 C 0.500 3.500 7 O -0.568 6.568 8 N -0.694 5.694 9 C 0.134 3.866 10 H 0.066 0.934 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.156 3.844 14 H 0.032 0.968 15 C -0.130 4.130 16 N -0.606 5.606 17 C -0.212 4.212 18 H 0.081 0.919 19 C -0.029 4.029 20 N -0.953 5.953 21 Si 0.918 3.082 22 H -0.310 1.310 23 H -0.316 1.316 24 H -0.258 1.258 25 C 0.112 3.888 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.118 0.882 29 H 0.422 0.578 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.080 0.920 40 H 0.253 0.747 41 H 0.032 0.968 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -10.436 -15.965 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.377 5.377 3 C 0.287 3.713 4 O -0.437 6.437 5 C -0.195 4.195 6 C 0.286 3.714 7 O -0.446 6.446 8 N -0.347 5.347 9 C 0.027 3.973 10 H 0.085 0.915 11 C -0.146 4.146 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.049 0.951 15 C -0.187 4.187 16 N -0.331 5.331 17 C -0.342 4.342 18 H 0.098 0.902 19 C -0.224 4.224 20 N -0.601 5.601 21 Si 0.751 3.249 22 H -0.239 1.239 23 H -0.245 1.245 24 H -0.182 1.182 25 C -0.015 4.015 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.259 0.741 30 H 0.189 0.811 31 H 0.159 0.841 32 H 0.249 0.751 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.197 -9.021 -15.851 18.517 hybrid contribution -0.663 0.749 0.911 1.353 sum 2.534 -8.272 -14.941 17.265 Atomic orbital electron populations 1.21618 0.79155 1.04245 1.00802 1.45640 1.08115 1.08247 1.75670 1.20645 0.90562 0.84008 0.76129 1.90842 1.70835 1.33129 1.48940 1.21603 0.92712 0.95463 1.09691 1.20715 0.82790 0.91852 0.76043 1.90805 1.56180 1.47681 1.49916 1.45690 1.06064 1.08766 1.74198 1.21267 0.97061 0.83570 0.95379 0.91544 1.21682 0.91405 1.01817 0.99726 1.21976 1.00362 0.99173 0.94356 1.20862 0.83382 0.97024 0.93524 0.95060 1.21745 0.99137 0.98757 0.99092 1.44554 1.06291 1.60500 1.21793 1.18890 1.16043 1.04289 0.95020 0.90192 1.25709 1.00008 0.99304 0.97335 1.69875 1.27815 1.36086 1.26282 0.86357 0.77830 0.86548 0.74200 1.23935 1.24515 1.18234 1.21659 0.92415 0.93922 0.93497 0.94612 0.93342 0.86317 0.74098 0.81119 0.84063 0.75065 0.88932 0.90372 0.88442 0.91387 0.93217 0.94792 0.90083 0.93782 0.94920 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.66 10.70 127.77 1.37 3.03 16 2 N -0.72 -14.95 5.71 -484.52 -2.77 -17.71 16 3 C 0.50 15.92 7.82 87.66 0.69 16.61 16 4 O -0.56 -25.66 14.18 20.42 0.29 -25.37 16 5 C -0.15 -3.87 6.19 29.10 0.18 -3.69 16 6 C 0.50 18.78 7.79 87.66 0.68 19.47 16 7 O -0.57 -28.67 13.84 20.43 0.28 -28.39 16 8 N -0.69 -22.31 4.92 -442.17 -2.17 -24.49 16 9 C 0.13 4.68 2.81 45.07 0.13 4.81 16 10 H 0.07 2.50 7.58 -2.39 -0.02 2.49 16 11 C -0.11 -2.62 5.58 30.63 0.17 -2.45 16 12 C -0.12 -2.79 5.22 30.68 0.16 -2.63 16 13 C 0.16 5.18 3.49 44.97 0.16 5.34 16 14 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 15 C -0.13 -4.04 7.94 71.98 0.57 -3.47 16 16 N -0.61 -26.79 2.67 -675.21 -1.80 -28.59 16 17 C -0.21 -11.40 9.04 84.03 0.76 -10.64 16 18 H 0.08 4.45 6.39 -2.91 -0.02 4.43 16 19 C -0.03 -1.76 5.24 84.86 0.44 -1.32 16 20 N -0.95 -61.21 13.97 21.65 0.30 -60.91 16 21 Si 0.92 51.40 24.34 68.60 1.67 53.07 16 22 H -0.31 -18.55 6.63 99.48 0.66 -17.89 16 23 H -0.32 -17.95 7.11 99.48 0.71 -17.24 16 24 H -0.26 -13.54 6.63 99.48 0.66 -12.88 16 25 C 0.11 5.05 3.80 86.37 0.33 5.38 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.42 4.79 8.83 -92.71 -0.82 3.97 16 30 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.41 10.37 6.79 -92.71 -0.63 9.74 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.51 6.42 -2.39 -0.02 1.49 16 37 H 0.05 1.60 7.43 -2.39 -0.02 1.58 16 38 H 0.03 1.24 7.64 -2.39 -0.02 1.22 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 41 H 0.03 1.81 4.62 -2.39 -0.01 1.80 16 42 H 0.03 1.14 7.03 -2.39 -0.02 1.12 16 Total: -1.00 -91.35 328.08 0.93 -90.42 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.50 Total: 11.54 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 5.64 Total: 30.42 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -6.44 Total: -131.70 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: 0.57 Total: -53.75 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 1.67 Total: 53.07 kcal Total: -91.35 0.93 -90.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131973031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.141 kcal (2) G-P(sol) polarization free energy of solvation -91.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds