Wall clock time and date at job start Tue Mar 31 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.44646 * 2 1 4 4 C 1.53039 * 109.46010 * 240.04010 * 2 1 3 5 5 C 1.53191 * 109.31416 * 178.61107 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34784 * 120.62829 * 126.41175 * 6 5 4 8 8 O 1.21276 * 119.99470 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 6 5 10 10 C 1.50697 * 109.46886 * 179.97438 * 9 7 6 11 11 N 1.34783 * 119.99956 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00465 * 0.02562 * 10 9 7 13 13 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 14 14 C 1.53070 * 109.45504 * 119.82784 * 2 1 3 15 15 H 1.08997 * 109.38860 * 61.36510 * 14 2 1 16 16 C 1.52997 * 109.62317 * 301.25976 * 14 2 1 17 17 N 1.46493 * 109.47466 * 175.10532 * 16 14 2 18 18 C 1.36942 * 120.00327 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99623 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99882 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00403 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46918 * 60.00063 * 22 20 18 24 24 H 1.48498 * 109.46651 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47139 * 299.99849 * 22 20 18 26 26 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47301 * 299.96157 * 1 2 3 28 28 H 1.09005 * 109.47321 * 59.95962 * 1 2 3 29 29 H 1.09002 * 109.49876 * 58.66085 * 4 2 1 30 30 H 1.09005 * 109.52615 * 298.58334 * 4 2 1 31 31 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 32 32 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 33 33 H 1.09000 * 109.47595 * 299.99863 * 9 7 6 34 34 H 1.09005 * 109.47205 * 60.00098 * 9 7 6 35 35 H 0.96997 * 119.99593 * 359.97438 * 11 10 9 36 36 H 0.97000 * 119.99845 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.58751 * 173.39743 * 13 6 5 38 38 H 1.08996 * 109.58750 * 293.67928 * 13 6 5 39 39 H 1.09004 * 109.47223 * 295.10786 * 16 14 2 40 40 H 1.09000 * 109.47085 * 55.10317 * 16 14 2 41 41 H 0.97004 * 119.99550 * 0.02562 * 17 16 14 42 42 H 0.96996 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7206 -1.2501 5 6 3.5713 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9621 -2.2572 -0.0003 8 8 5.3646 -2.7107 1.0500 9 6 5.4617 -2.8210 -1.3055 10 6 6.4453 -3.9291 -1.0302 11 7 7.0266 -4.5841 -2.0548 12 8 6.7138 -4.2316 0.1132 13 6 3.5714 -0.6886 1.2641 14 6 2.0398 -0.7179 1.2521 15 1 1.6957 -1.7521 1.2416 16 6 1.5058 -0.0141 2.5012 17 7 1.8982 -0.7700 3.6931 18 6 1.5307 -0.3280 4.9360 19 1 0.9512 0.5777 5.0375 20 6 1.9030 -1.0441 6.0654 21 7 2.6097 -2.1476 5.9417 22 14 1.4011 -0.4415 7.7609 23 1 -0.0802 -0.3814 7.8463 24 1 1.9184 -1.3769 8.7917 25 1 1.9657 0.9124 7.9922 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5132 0.8903 28 1 -0.3634 0.5145 -0.8897 29 1 1.6572 -0.2205 -2.1399 30 1 1.6978 -1.7555 -1.2391 31 1 3.9142 0.3411 -1.3675 32 1 3.9416 -1.2843 -2.0986 33 1 4.6210 -3.2146 -1.8769 34 1 5.9528 -2.0335 -1.8773 35 1 6.8116 -4.3424 -2.9692 36 1 7.6594 -5.2976 -1.8776 37 1 3.9418 -1.2846 2.0982 38 1 3.9164 0.3400 1.3685 39 1 1.9206 0.9925 2.5564 40 1 0.4186 0.0434 2.4490 41 1 2.4190 -1.5833 3.6019 42 1 2.8701 -2.6478 6.7309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132718826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:24 Heat of formation + Delta-G solvation = -66.741459 kcal Electronic energy + Delta-G solvation = -23062.961606 eV Core-core repulsion = 19656.974359 eV Total energy + Delta-G solvation = -3405.987247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44938 -39.15152 -37.51482 -34.92586 -33.82975 -33.52660 -31.90492 -30.68200 -29.62135 -27.91533 -25.46828 -23.42461 -23.14737 -21.36089 -21.16931 -19.79972 -18.89656 -17.55229 -17.36969 -16.93470 -15.95884 -15.82503 -15.54190 -14.79835 -14.58766 -14.35988 -13.85782 -13.68290 -13.63189 -13.31004 -13.16222 -13.00368 -12.55683 -12.50334 -12.06302 -11.82117 -11.70160 -11.48035 -10.94725 -10.83978 -10.74490 -10.54555 -10.29794 -10.10585 -10.06628 -9.84826 -9.78136 -9.53169 -9.26223 -8.77051 -8.38461 -6.80600 -5.63543 -2.93674 2.56494 2.87341 2.91903 3.51428 3.53645 3.55122 3.57392 4.36416 4.62008 4.69890 4.75294 4.84643 4.91295 5.01037 5.02554 5.19425 5.30803 5.38191 5.66262 5.69445 5.71145 5.75195 5.84700 5.92673 6.00575 6.06204 6.24165 6.29480 6.36908 6.49451 6.63470 6.65598 6.73200 6.87239 6.95839 7.15128 7.58555 7.78853 8.19686 8.47445 8.53875 9.64526 10.23279 10.57177 11.58553 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.004671 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.057583 B = 5992.660095 C = 7600.147337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.107 3.893 6 N -0.615 5.615 7 C 0.507 3.493 8 O -0.484 6.484 9 C -0.165 4.165 10 C 0.511 3.489 11 N -0.863 5.863 12 O -0.489 6.489 13 C 0.122 3.878 14 C -0.101 4.101 15 H 0.073 0.927 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.026 0.974 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 1.636 -25.523 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.351 5.351 7 C 0.291 3.709 8 O -0.356 6.356 9 C -0.208 4.208 10 C 0.293 3.707 11 N -0.430 5.430 12 O -0.360 6.360 13 C 0.000 4.000 14 C -0.121 4.121 15 H 0.092 0.908 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.375 4.375 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.225 0.775 36 H 0.232 0.768 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.166 1.402 -23.926 24.175 hybrid contribution -0.050 -0.061 0.287 0.298 sum 3.116 1.340 -23.639 23.881 Atomic orbital electron populations 1.21881 0.95016 1.01934 1.01676 1.21087 0.95913 0.99371 0.93972 0.91119 1.21986 0.94701 1.01604 0.98447 1.21721 0.94791 0.99162 0.85988 1.48177 1.43622 1.35737 1.07593 1.19901 0.80105 0.80277 0.90600 1.90932 1.55028 1.57238 1.32358 1.21623 1.00666 0.99205 0.99272 1.20079 0.81889 0.83266 0.85432 1.43871 1.49132 1.40836 1.09117 1.90961 1.60208 1.64286 1.20535 1.21690 0.93528 0.99018 0.85763 1.21715 0.94624 1.00705 0.95062 0.90847 1.20707 0.96742 0.94021 0.85417 1.42418 1.65425 1.29179 1.00750 1.19146 1.28163 1.06364 0.83814 0.91338 1.24757 1.00799 0.97505 0.97764 1.69666 1.42124 1.17228 1.28627 0.86297 0.77911 0.77651 0.84472 1.21365 1.21715 1.21318 0.92803 0.91630 0.93283 0.90942 0.91496 0.91398 0.90346 0.86307 0.86381 0.77519 0.76762 0.87823 0.91777 0.96481 0.95626 0.78068 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.82 37.16 0.33 -1.38 16 2 C -0.08 -1.01 2.22 -90.57 -0.20 -1.22 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.18 5.36 -26.61 -0.14 -1.33 16 5 C 0.11 0.94 6.34 -3.71 -0.02 0.92 16 6 N -0.62 -8.52 2.97 -172.77 -0.51 -9.03 16 7 C 0.51 7.95 7.69 -10.98 -0.08 7.86 16 8 O -0.48 -10.77 13.59 -18.95 -0.26 -11.03 16 9 C -0.16 -1.56 4.53 -29.04 -0.13 -1.69 16 10 C 0.51 6.26 8.09 -10.98 -0.09 6.17 16 11 N -0.86 -5.87 8.87 31.22 0.28 -5.60 16 12 O -0.49 -9.37 15.02 -18.96 -0.28 -9.65 16 13 C 0.12 2.11 5.51 -3.71 -0.02 2.09 16 14 C -0.10 -1.67 1.92 -90.48 -0.17 -1.85 16 15 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.16 3.25 5.42 -4.05 -0.02 3.23 16 17 N -0.73 -19.42 5.38 -59.91 -0.32 -19.75 16 18 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -29.81 13.06 55.49 0.72 -29.08 16 22 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 33 H 0.12 0.74 7.69 -51.93 -0.40 0.34 16 34 H 0.12 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.40 1.11 8.83 -40.82 -0.36 0.75 16 36 H 0.40 2.57 8.93 -40.82 -0.36 2.20 16 37 H 0.10 2.30 6.21 -51.93 -0.32 1.98 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.52 6.16 -51.93 -0.32 0.20 16 41 H 0.39 11.02 6.89 -40.82 -0.28 10.74 16 42 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -40.04 335.47 -7.60 -47.63 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.45 Total: 8.06 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.81 Total: 5.10 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 0.17 Total: -63.46 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.54 Total: -20.69 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -40.04 -7.60 -47.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132718826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.107 kcal (2) G-P(sol) polarization free energy of solvation -40.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds