Wall clock time and date at job start Tue Mar 31 2020 02:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.44646 * 2 1 4 4 C 1.53039 * 109.46010 * 240.04010 * 2 1 3 5 5 C 1.53191 * 109.31416 * 178.61107 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34784 * 120.62829 * 126.41175 * 6 5 4 8 8 O 1.21276 * 119.99470 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 6 5 10 10 C 1.50697 * 109.46886 * 179.97438 * 9 7 6 11 11 N 1.34783 * 119.99956 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00465 * 0.02562 * 10 9 7 13 13 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 14 14 C 1.53070 * 109.45504 * 119.82784 * 2 1 3 15 15 H 1.08997 * 109.38860 * 61.36510 * 14 2 1 16 16 C 1.52997 * 109.62317 * 301.25976 * 14 2 1 17 17 N 1.46493 * 109.47466 * 175.10532 * 16 14 2 18 18 C 1.36942 * 120.00327 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99623 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99882 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00403 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46918 * 60.00063 * 22 20 18 24 24 H 1.48498 * 109.46651 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47139 * 299.99849 * 22 20 18 26 26 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47301 * 299.96157 * 1 2 3 28 28 H 1.09005 * 109.47321 * 59.95962 * 1 2 3 29 29 H 1.09002 * 109.49876 * 58.66085 * 4 2 1 30 30 H 1.09005 * 109.52615 * 298.58334 * 4 2 1 31 31 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 32 32 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 33 33 H 1.09000 * 109.47595 * 299.99863 * 9 7 6 34 34 H 1.09005 * 109.47205 * 60.00098 * 9 7 6 35 35 H 0.96997 * 119.99593 * 359.97438 * 11 10 9 36 36 H 0.97000 * 119.99845 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.58751 * 173.39743 * 13 6 5 38 38 H 1.08996 * 109.58750 * 293.67928 * 13 6 5 39 39 H 1.09004 * 109.47223 * 295.10786 * 16 14 2 40 40 H 1.09000 * 109.47085 * 55.10317 * 16 14 2 41 41 H 0.97004 * 119.99550 * 0.02562 * 17 16 14 42 42 H 0.96996 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7206 -1.2501 5 6 3.5713 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9621 -2.2572 -0.0003 8 8 5.3646 -2.7107 1.0500 9 6 5.4617 -2.8210 -1.3055 10 6 6.4453 -3.9291 -1.0302 11 7 7.0266 -4.5841 -2.0548 12 8 6.7138 -4.2316 0.1132 13 6 3.5714 -0.6886 1.2641 14 6 2.0398 -0.7179 1.2521 15 1 1.6957 -1.7521 1.2416 16 6 1.5058 -0.0141 2.5012 17 7 1.8982 -0.7700 3.6931 18 6 1.5307 -0.3280 4.9360 19 1 0.9512 0.5777 5.0375 20 6 1.9030 -1.0441 6.0654 21 7 2.6097 -2.1476 5.9417 22 14 1.4011 -0.4415 7.7609 23 1 -0.0802 -0.3814 7.8463 24 1 1.9184 -1.3769 8.7917 25 1 1.9657 0.9124 7.9922 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5132 0.8903 28 1 -0.3634 0.5145 -0.8897 29 1 1.6572 -0.2205 -2.1399 30 1 1.6978 -1.7555 -1.2391 31 1 3.9142 0.3411 -1.3675 32 1 3.9416 -1.2843 -2.0986 33 1 4.6210 -3.2146 -1.8769 34 1 5.9528 -2.0335 -1.8773 35 1 6.8116 -4.3424 -2.9692 36 1 7.6594 -5.2976 -1.8776 37 1 3.9418 -1.2846 2.0982 38 1 3.9164 0.3400 1.3685 39 1 1.9206 0.9925 2.5564 40 1 0.4186 0.0434 2.4490 41 1 2.4190 -1.5833 3.6019 42 1 2.8701 -2.6478 6.7309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132718826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:23 Heat of formation + Delta-G solvation = -99.936900 kcal Electronic energy + Delta-G solvation = -23064.401068 eV Core-core repulsion = 19656.974359 eV Total energy + Delta-G solvation = -3407.426710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54413 -40.19490 -38.75135 -36.59202 -35.09836 -34.55890 -33.51655 -31.96792 -30.94649 -29.00522 -27.17147 -25.02247 -24.35150 -22.54894 -22.31738 -21.01073 -19.90642 -19.14792 -18.47350 -18.13938 -16.93489 -16.81537 -16.73956 -16.70335 -15.63331 -15.58242 -15.46797 -15.08650 -14.88757 -14.52329 -14.34125 -14.16385 -14.00391 -13.89607 -13.06158 -13.04058 -12.94729 -12.73091 -12.61517 -12.55725 -12.20942 -11.98111 -11.90620 -11.74122 -11.35436 -11.16721 -10.98579 -10.89679 -10.57190 -10.48961 -9.54964 -9.01274 -7.95133 -5.26321 1.42914 1.48156 1.54566 1.66368 1.78166 1.91806 2.54579 2.73812 3.37327 3.44695 3.70708 3.85906 3.89422 4.10828 4.12978 4.23619 4.31063 4.37633 4.39535 4.54343 4.62831 4.66033 4.78618 4.83684 4.89759 4.99672 5.02883 5.12561 5.17038 5.27344 5.32873 5.46336 5.49529 5.62033 5.63042 5.97424 6.24721 6.49096 6.60045 7.29679 7.31288 7.52273 8.07459 8.29196 9.28286 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.004671 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.057583 B = 5992.660095 C = 7600.147337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.610 5.610 7 C 0.491 3.509 8 O -0.568 6.568 9 C -0.148 4.148 10 C 0.503 3.497 11 N -0.833 5.833 12 O -0.574 6.574 13 C 0.128 3.872 14 C -0.087 4.087 15 H 0.046 0.954 16 C 0.156 3.844 17 N -0.750 5.750 18 C -0.248 4.248 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.975 5.975 22 Si 0.979 3.021 23 H -0.273 1.273 24 H -0.298 1.298 25 H -0.275 1.275 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.422 0.578 36 H 0.405 0.595 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.033 0.967 41 H 0.368 0.632 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 3.516 -29.901 30.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.023 4.023 6 N -0.344 5.344 7 C 0.279 3.721 8 O -0.445 6.445 9 C -0.190 4.190 10 C 0.287 3.713 11 N -0.400 5.400 12 O -0.451 6.451 13 C 0.004 3.996 14 C -0.107 4.107 15 H 0.065 0.935 16 C 0.030 3.970 17 N -0.392 5.392 18 C -0.380 4.380 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.625 5.625 22 Si 0.807 3.193 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.201 1.201 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.254 0.746 36 H 0.236 0.764 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.200 0.800 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.095 3.349 -28.471 28.744 hybrid contribution 0.247 -0.597 1.518 1.650 sum 2.343 2.751 -26.953 27.194 Atomic orbital electron populations 1.21858 0.94510 1.01592 1.02308 1.21109 0.96277 0.99676 0.92781 0.89907 1.22000 0.94830 1.01277 0.98030 1.22237 0.94619 1.01061 0.84399 1.48290 1.42889 1.35157 1.08097 1.21119 0.79313 0.79686 0.92016 1.90914 1.57899 1.59822 1.35833 1.21693 1.01722 0.99497 0.96056 1.20672 0.81971 0.83710 0.84968 1.43617 1.47491 1.39477 1.09394 1.90951 1.63184 1.66911 1.24059 1.21277 0.94036 0.97926 0.86341 1.21557 0.93876 0.99353 0.95881 0.93513 1.20936 0.97105 0.93838 0.85166 1.42708 1.65229 1.29148 1.02115 1.19665 1.27034 1.06260 0.85030 0.90168 1.25709 1.01502 0.97908 1.02159 1.69886 1.44317 1.19064 1.29252 0.85131 0.78074 0.77153 0.78919 1.19843 1.22401 1.20069 0.93657 0.93632 0.89973 0.86702 0.92135 0.89332 0.85534 0.81660 0.81229 0.74592 0.76369 0.94131 0.91494 0.96033 0.94909 0.80023 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.82 71.98 0.64 -2.36 16 2 C -0.08 -1.70 2.22 -10.76 -0.02 -1.73 16 3 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 4 C -0.12 -1.66 5.36 30.67 0.16 -1.50 16 5 C 0.10 1.22 6.34 86.36 0.55 1.77 16 6 N -0.61 -16.30 2.97 -818.92 -2.44 -18.73 16 7 C 0.49 15.47 7.69 87.66 0.67 16.14 16 8 O -0.57 -27.49 13.59 20.42 0.28 -27.21 16 9 C -0.15 -2.29 4.53 29.10 0.13 -2.16 16 10 C 0.50 11.79 8.09 87.66 0.71 12.50 16 11 N -0.83 -9.14 8.87 -173.52 -1.54 -10.68 16 12 O -0.57 -23.32 15.02 20.39 0.31 -23.01 16 13 C 0.13 4.66 5.51 86.36 0.48 5.14 16 14 C -0.09 -2.94 1.92 -10.71 -0.02 -2.96 16 15 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 16 C 0.16 6.57 5.42 86.38 0.47 7.04 16 17 N -0.75 -41.95 5.38 -343.47 -1.85 -43.80 16 18 C -0.25 -14.92 9.99 84.03 0.84 -14.08 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 21 N -0.97 -65.98 13.06 21.65 0.28 -65.70 16 22 Si 0.98 49.27 29.55 68.60 2.03 51.29 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 25 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 1.11 6.30 -2.39 -0.02 1.09 16 28 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 0.44 5.93 -2.39 -0.01 0.43 16 33 H 0.17 1.05 7.69 -2.39 -0.02 1.03 16 34 H 0.17 0.90 7.94 -2.38 -0.02 0.88 16 35 H 0.42 0.43 8.83 -92.71 -0.82 -0.39 16 36 H 0.41 4.51 8.93 -92.71 -0.83 3.68 16 37 H 0.04 2.00 6.21 -2.39 -0.01 1.99 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.03 1.35 6.16 -2.39 -0.01 1.34 16 41 H 0.37 22.86 6.89 -92.71 -0.64 22.22 16 42 H 0.25 16.41 8.31 -92.71 -0.77 15.64 16 Total: -1.00 -101.06 335.47 0.91 -100.15 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -1.23 Total: 24.44 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 5.07 Total: 13.25 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -5.54 Total: -138.90 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: 0.58 Total: -50.23 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.29 kcal Total: -101.06 0.91 -100.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132718826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.212 kcal (2) G-P(sol) polarization free energy of solvation -101.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds