Wall clock time and date at job start Tue Mar 31 2020 02:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08988 * 109.46526 * 2 1 4 4 C 1.53045 * 109.45883 * 119.97758 * 2 1 3 5 5 C 1.53193 * 109.31211 * 58.63413 * 4 2 1 6 6 N 1.46927 * 108.77386 * 54.63774 * 5 4 2 7 7 C 1.34777 * 120.63303 * 126.36982 * 6 5 4 8 8 O 1.21283 * 120.00463 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99675 * 359.72079 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 N 1.34775 * 120.00069 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00006 * 359.97438 * 10 9 7 13 13 C 1.46925 * 118.74028 * 306.63705 * 6 5 4 14 14 C 1.52760 * 109.00575 * 53.31181 * 13 6 5 15 15 H 1.09007 * 109.35967 * 65.50205 * 14 13 6 16 16 C 1.53004 * 109.56601 * 185.55135 * 14 13 6 17 17 N 1.46502 * 109.47200 * 294.96623 * 16 14 13 18 18 C 1.36927 * 119.99927 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00538 * 359.97438 * 18 17 16 20 20 C 1.38819 * 120.00273 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99209 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00286 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 59.99589 * 22 20 18 24 24 H 1.48496 * 109.47089 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46931 * 299.99691 * 22 20 18 26 26 H 1.09003 * 109.46324 * 300.02958 * 1 2 3 27 27 H 1.08998 * 109.46897 * 60.01703 * 1 2 3 28 28 H 1.08993 * 109.47837 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.49670 * 298.68652 * 4 2 1 30 30 H 1.09000 * 109.49698 * 178.58758 * 4 2 1 31 31 H 1.08997 * 109.59146 * 294.85081 * 5 4 2 32 32 H 1.08999 * 109.58394 * 174.42111 * 5 4 2 33 33 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 34 34 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 35 35 H 0.97002 * 120.00050 * 359.97438 * 11 10 9 36 36 H 0.96996 * 120.00041 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.59194 * 173.14578 * 13 6 5 38 38 H 1.09004 * 109.59115 * 293.57214 * 13 6 5 39 39 H 1.09002 * 109.46956 * 54.96666 * 16 14 13 40 40 H 1.08999 * 109.47035 * 174.96408 * 16 14 13 41 41 H 0.97003 * 119.99453 * 359.97438 * 17 16 14 42 42 H 0.97007 * 119.99108 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7210 1.2500 5 6 1.4991 -2.1543 1.2641 6 7 1.8618 -2.8090 -0.0002 7 6 2.5153 -3.9877 -0.0005 8 8 2.8087 -4.5183 -1.0509 9 6 2.8865 -4.6436 1.3045 10 6 3.6098 -5.9367 1.0290 11 7 4.0397 -6.6999 2.0532 12 8 3.8042 -6.2910 -0.1146 13 6 1.5037 -2.1514 -1.2644 14 6 2.0394 -0.7209 -1.2502 15 1 3.1292 -0.7432 -1.2386 16 6 1.5565 0.0195 -2.4991 17 7 2.1417 -0.5998 -3.6908 18 6 1.8503 -0.1036 -4.9333 19 1 1.1887 0.7440 -5.0349 20 6 2.4043 -0.6907 -6.0627 21 7 3.2093 -1.7246 -5.9390 22 14 2.0073 -0.0134 -7.7577 23 1 2.4438 1.4037 -7.8392 24 1 2.7186 -0.8111 -8.7885 25 1 0.5432 -0.0947 -7.9927 26 1 -0.3632 0.5143 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 -0.3634 -1.0275 0.0005 29 1 1.6960 -0.1937 2.1398 30 1 3.1296 -0.7434 1.2381 31 1 0.4142 -2.1346 1.3673 32 1 1.9377 -2.7020 2.0982 33 1 3.5359 -3.9784 1.8738 34 1 1.9828 -4.8480 1.8786 35 1 3.8839 -6.4167 2.9678 36 1 4.5055 -7.5320 1.8759 37 1 1.9453 -2.6972 -2.0982 38 1 0.4192 -2.1314 -1.3716 39 1 0.4695 -0.0365 -2.5570 40 1 1.8641 1.0638 -2.4440 41 1 2.7356 -1.3613 -3.5996 42 1 3.5968 -2.1346 -6.7282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132718828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:27 Heat of formation + Delta-G solvation = -96.943666 kcal Electronic energy + Delta-G solvation = -23198.412438 eV Core-core repulsion = 19791.115524 eV Total energy + Delta-G solvation = -3407.296913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62992 -40.30977 -38.80177 -36.61647 -34.96724 -34.51636 -33.47130 -31.94343 -30.89520 -28.61358 -27.08110 -25.69686 -24.87071 -22.52882 -22.42445 -20.66011 -19.39740 -18.90129 -18.49984 -18.11771 -16.95716 -16.86929 -16.82546 -16.62611 -15.89102 -15.68229 -15.57094 -15.28351 -14.80926 -14.59186 -14.37986 -14.14297 -14.05911 -13.74310 -13.05357 -12.94766 -12.90859 -12.82092 -12.58517 -12.42705 -12.16448 -11.97980 -11.90739 -11.67840 -11.37509 -11.19904 -10.99402 -10.91644 -10.57109 -10.49079 -9.48832 -9.02396 -7.95474 -5.26739 1.42840 1.48108 1.54550 1.66479 1.78207 1.92381 2.54422 2.73922 3.37007 3.44941 3.72824 3.86457 3.89796 4.10143 4.16083 4.23461 4.31780 4.38396 4.39381 4.53357 4.58821 4.62377 4.79000 4.82263 4.88316 4.96124 5.05648 5.13007 5.24546 5.28493 5.34606 5.44814 5.47810 5.61796 5.65638 5.97510 6.24341 6.49554 6.60266 7.29313 7.31657 7.52413 8.06854 8.28774 9.27932 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.004678 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.434439 B = 5983.949910 C = 7523.459584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.095 3.905 6 N -0.609 5.609 7 C 0.491 3.509 8 O -0.568 6.568 9 C -0.148 4.148 10 C 0.503 3.497 11 N -0.833 5.833 12 O -0.574 6.574 13 C 0.130 3.870 14 C -0.089 4.089 15 H 0.046 0.954 16 C 0.159 3.841 17 N -0.750 5.750 18 C -0.249 4.249 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.974 5.974 22 Si 0.980 3.020 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.275 1.275 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.422 0.578 36 H 0.405 0.595 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.023 0.977 41 H 0.369 0.631 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -1.140 29.874 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.162 4.162 5 C -0.025 4.025 6 N -0.343 5.343 7 C 0.279 3.721 8 O -0.445 6.445 9 C -0.190 4.190 10 C 0.287 3.713 11 N -0.400 5.400 12 O -0.451 6.451 13 C 0.007 3.993 14 C -0.109 4.109 15 H 0.065 0.935 16 C 0.032 3.968 17 N -0.392 5.392 18 C -0.380 4.380 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.625 5.625 22 Si 0.808 3.192 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.201 1.201 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.183 0.817 34 H 0.187 0.813 35 H 0.254 0.746 36 H 0.236 0.764 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.200 0.800 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.526 -1.370 28.443 28.834 hybrid contribution 0.528 -0.380 -1.513 1.647 sum -3.998 -1.749 26.930 27.282 Atomic orbital electron populations 1.21953 0.94069 1.02119 1.02417 1.21084 0.96885 0.99245 0.92762 0.90486 1.21967 1.00879 0.95254 0.98070 1.22264 1.02054 0.93763 0.84421 1.48265 1.57347 1.20618 1.08049 1.21111 0.77746 0.81280 0.92002 1.90916 1.53812 1.63921 1.35816 1.21694 1.05847 0.95360 0.96082 1.20668 0.79094 0.86583 0.84969 1.43615 1.61079 1.25889 1.09397 1.90950 1.56926 1.73174 1.24041 1.21178 0.99236 0.92664 0.86236 1.21468 0.99160 0.94345 0.95950 0.93544 1.20890 0.95890 0.94809 0.85192 1.42714 1.56854 1.37508 1.02159 1.19664 1.22517 1.10807 0.85050 0.90175 1.25719 1.00494 0.98901 1.02183 1.69895 1.37229 1.26103 1.29270 0.85122 0.77696 0.77534 0.78874 1.19841 1.22380 1.20060 0.89833 0.93861 0.92514 0.86716 0.92059 0.89226 0.85636 0.81687 0.81251 0.74596 0.76372 0.94328 0.91278 0.95306 0.95915 0.80004 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.11 71.98 0.58 -2.22 16 2 C -0.08 -1.74 2.71 -10.76 -0.03 -1.77 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.67 5.63 30.67 0.17 -1.50 16 5 C 0.10 1.22 5.88 86.36 0.51 1.73 16 6 N -0.61 -16.23 2.98 -819.73 -2.44 -18.67 16 7 C 0.49 15.45 7.69 87.66 0.67 16.13 16 8 O -0.57 -27.46 13.59 20.40 0.28 -27.19 16 9 C -0.15 -2.30 4.53 29.10 0.13 -2.16 16 10 C 0.50 11.80 8.09 87.66 0.71 12.51 16 11 N -0.83 -9.15 8.87 -173.53 -1.54 -10.69 16 12 O -0.57 -23.30 15.02 20.40 0.31 -23.00 16 13 C 0.13 4.74 5.03 86.22 0.43 5.17 16 14 C -0.09 -3.04 2.14 -10.86 -0.02 -3.06 16 15 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 16 C 0.16 6.70 5.19 86.38 0.45 7.15 16 17 N -0.75 -42.05 5.38 -343.44 -1.85 -43.90 16 18 C -0.25 -14.96 9.99 84.04 0.84 -14.12 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 21 N -0.97 -65.98 13.06 21.65 0.28 -65.70 16 22 Si 0.98 49.28 29.55 68.60 2.03 51.31 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 25 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.04 0.99 6.57 -2.39 -0.02 0.98 16 28 H 0.06 1.08 4.99 -2.39 -0.01 1.07 16 29 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 0.91 6.69 -2.39 -0.02 0.90 16 32 H 0.13 0.46 5.93 -2.39 -0.01 0.45 16 33 H 0.17 1.06 7.69 -2.38 -0.02 1.04 16 34 H 0.17 0.90 7.94 -2.39 -0.02 0.88 16 35 H 0.42 0.44 8.83 -92.71 -0.82 -0.37 16 36 H 0.41 4.51 8.93 -92.71 -0.83 3.68 16 37 H 0.04 1.91 6.20 -2.39 -0.01 1.89 16 38 H 0.07 2.41 6.70 -2.38 -0.02 2.39 16 39 H 0.03 1.19 6.73 -2.39 -0.02 1.18 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.37 22.90 6.89 -92.71 -0.64 22.26 16 42 H 0.25 16.42 8.31 -92.70 -0.77 15.64 16 Total: -1.00 -100.97 329.34 0.77 -100.21 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -1.22 Total: 24.34 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 4.92 Total: 13.28 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -5.54 Total: -138.95 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: 0.58 Total: -50.19 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.03 Total: 51.31 kcal Total: -100.97 0.77 -100.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132718828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.265 kcal (2) G-P(sol) polarization free energy of solvation -100.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds