Wall clock time and date at job start Tue Mar 31 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 115.55699 * 2 1 4 4 C 1.53069 * 117.49630 * 145.70125 * 2 1 3 5 5 C 1.52997 * 117.50309 * 214.30789 * 2 1 3 6 6 H 1.08997 * 117.49451 * 0.02562 * 5 2 1 7 7 C 1.52997 * 117.50040 * 145.01862 * 5 2 1 8 8 C 1.50703 * 109.47084 * 184.91379 * 7 5 2 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.46769 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47010 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00015 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00174 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00060 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99982 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47330 * 120.00360 * 22 20 18 25 25 H 1.48511 * 109.47240 * 240.00353 * 22 20 18 26 26 H 1.09000 * 109.47249 * 205.69210 * 1 2 3 27 27 H 1.08998 * 109.47536 * 325.69310 * 1 2 3 28 28 H 1.08999 * 109.46932 * 85.69186 * 1 2 3 29 29 H 1.09008 * 117.49332 * 0.02562 * 4 2 1 30 30 H 1.09000 * 117.51769 * 214.96642 * 4 2 1 31 31 H 1.09002 * 109.47045 * 64.91412 * 7 5 2 32 32 H 1.09001 * 109.47375 * 304.91337 * 7 5 2 33 33 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 35 35 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 36 36 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 37 37 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 38 38 H 1.00898 * 110.99877 * 303.95043 * 13 12 11 39 39 H 1.09006 * 109.46661 * 299.99622 * 14 13 12 40 40 H 1.08995 * 109.47087 * 60.00099 * 14 13 12 41 41 H 0.97000 * 119.99903 * 359.97438 * 17 15 14 42 42 H 0.97000 * 119.99905 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2367 -1.1217 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6113 -1.8582 -1.2685 7 6 3.5490 -0.7759 -1.4713 8 6 4.0229 -1.9685 -2.2614 9 8 3.3744 -2.9934 -2.2600 10 7 5.1673 -1.8962 -2.9696 11 6 5.6277 -3.0554 -3.7381 12 6 6.9409 -2.7107 -4.4434 13 7 7.4028 -3.8733 -5.2135 14 6 8.6642 -3.5783 -5.9064 15 6 9.1054 -4.7912 -6.6845 16 8 8.4354 -5.8021 -6.6634 17 7 10.2451 -4.7530 -7.4028 18 6 10.6468 -5.8566 -8.1102 19 1 10.0502 -6.7567 -8.0915 20 6 11.8216 -5.8171 -8.8512 21 7 12.5478 -4.7221 -8.8736 22 14 12.3685 -7.3204 -9.8156 23 1 11.3831 -8.4152 -9.6268 24 1 12.4571 -6.9781 -11.2579 25 1 13.7001 -7.7631 -9.3292 26 1 -0.3634 -0.9261 0.4455 27 1 -0.3634 0.8488 0.5792 28 1 -0.3633 0.0772 -1.0248 29 1 1.6113 -1.8595 1.2679 30 1 3.1719 -0.8764 1.2684 31 1 4.3017 -0.5092 -0.7294 32 1 3.3887 0.0658 -2.1451 33 1 5.6858 -1.0764 -2.9710 34 1 4.8751 -3.3214 -4.4803 35 1 5.7875 -3.8975 -3.0647 36 1 6.7816 -1.8685 -5.1168 37 1 7.6933 -2.4450 -3.7009 38 1 7.4963 -4.6851 -4.6217 39 1 8.5162 -2.7425 -6.5903 40 1 9.4286 -3.3179 -5.1743 41 1 10.7812 -3.9448 -7.4193 42 1 13.3677 -4.6944 -9.3912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133339443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:03 Heat of formation + Delta-G solvation = -88.027166 kcal Electronic energy + Delta-G solvation = -20741.633034 eV Core-core repulsion = 17334.722769 eV Total energy + Delta-G solvation = -3406.910265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87030 -40.15901 -38.62293 -37.41490 -35.99624 -35.18657 -33.27679 -31.88383 -30.27142 -28.49826 -27.39810 -25.52634 -23.23185 -22.51922 -21.45350 -21.10392 -20.91974 -19.92570 -18.24502 -17.60600 -17.26880 -17.21604 -16.57413 -16.41201 -16.03914 -15.69634 -15.44259 -15.27809 -14.88567 -14.66113 -14.29022 -14.03704 -13.87897 -13.53973 -13.39360 -13.31236 -13.02706 -12.91572 -12.58946 -12.41916 -12.38683 -12.31278 -12.18616 -12.11825 -11.52119 -11.06754 -10.85707 -10.57191 -10.37109 -10.12060 -10.01969 -9.38835 -8.47575 -5.96189 1.36466 1.42166 1.56173 1.66336 2.03634 2.05396 2.30571 2.85678 3.04387 3.19877 3.53968 3.73027 3.77850 3.90900 3.96212 4.10917 4.16433 4.31502 4.45762 4.46104 4.50114 4.56267 4.59353 4.64575 4.79211 4.90375 4.93399 4.95109 4.96332 5.00459 5.21273 5.30932 5.40455 5.41378 5.50285 5.84514 6.06944 6.31297 6.57663 6.59791 7.12322 7.29147 7.55588 8.11372 8.69917 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.074839 B = 0.001869 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.044793 B =14974.696601 C =15185.683885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 H 0.124 0.876 4 C -0.179 4.179 5 C -0.157 4.157 6 H 0.086 0.914 7 C -0.098 4.098 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.715 5.715 11 C 0.127 3.873 12 C 0.060 3.940 13 N -0.688 5.688 14 C 0.068 3.932 15 C 0.434 3.566 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.419 0.581 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.345 0.655 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.398 0.602 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.170 17.167 17.352 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 H 0.142 0.858 4 C -0.216 4.216 5 C -0.176 4.176 6 H 0.104 0.896 7 C -0.137 4.137 8 C 0.296 3.704 9 O -0.471 6.471 10 N -0.369 5.369 11 C 0.002 3.998 12 C -0.070 4.070 13 N -0.321 5.321 14 C -0.064 4.064 15 C 0.222 3.778 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.266 15.968 16.714 27.702 hybrid contribution 1.439 -0.468 0.002 1.513 sum -13.827 15.500 16.717 26.662 Atomic orbital electron populations 1.21411 0.92763 1.02204 1.02075 1.22543 0.95521 0.94716 1.02970 0.85834 1.23309 1.03257 1.01606 0.93448 1.22113 0.98437 1.02598 0.94438 0.89566 1.21245 0.97006 0.95432 1.00057 1.21339 0.79963 0.90189 0.78945 1.90703 1.57013 1.34378 1.64973 1.45776 1.24976 1.16939 1.49201 1.21018 0.95903 0.88607 0.94295 1.22070 0.94783 0.93644 0.96457 1.59899 1.30573 1.06907 1.34707 1.21528 0.91404 0.95397 0.98045 1.20954 0.82124 0.90788 0.83926 1.90507 1.56534 1.35943 1.68288 1.41916 1.21241 1.14888 1.42864 1.19706 1.06945 0.93927 1.25956 0.90477 1.26016 0.95596 1.01158 0.98344 1.69670 1.15812 1.28283 1.42188 0.84878 0.78070 0.77481 0.77933 1.19994 1.19573 1.19499 0.93249 0.90780 0.92279 0.89594 0.87520 0.86090 0.85860 0.74319 0.92746 0.92949 0.88750 0.92403 0.83623 0.87239 0.90862 0.76820 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 10.19 71.98 0.73 -0.63 16 2 C -0.14 -1.52 6.13 -10.77 -0.07 -1.58 16 3 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.18 -2.34 9.83 30.62 0.30 -2.04 16 5 C -0.16 -2.43 5.13 -10.80 -0.06 -2.49 16 6 H 0.09 1.91 7.31 -2.39 -0.02 1.89 16 7 C -0.10 -1.11 5.98 29.85 0.18 -0.93 16 8 C 0.51 10.28 7.83 87.66 0.69 10.96 16 9 O -0.59 -18.52 15.56 -3.02 -0.05 -18.57 16 10 N -0.72 -11.47 5.56 -463.05 -2.57 -14.04 16 11 C 0.13 2.81 5.93 86.38 0.51 3.32 16 12 C 0.06 1.19 5.80 86.30 0.50 1.69 16 13 N -0.69 -20.94 6.13 -517.92 -3.17 -24.12 16 14 C 0.07 2.22 6.17 85.56 0.53 2.75 16 15 C 0.43 20.55 7.82 87.66 0.69 21.23 16 16 O -0.63 -35.16 15.78 -3.08 -0.05 -35.21 16 17 N -0.57 -29.11 5.29 -306.98 -1.62 -30.73 16 18 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 22 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H 0.05 0.59 7.90 -2.39 -0.02 0.57 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.24 8.05 -2.38 -0.02 1.22 16 30 H 0.11 1.07 8.03 -2.39 -0.02 1.06 16 31 H 0.12 0.75 7.88 -2.39 -0.02 0.73 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 3.37 8.47 -92.71 -0.79 2.58 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.35 11.32 8.43 -89.70 -0.76 10.56 16 39 H 0.11 3.10 8.14 -2.38 -0.02 3.09 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -76.11 359.07 -1.10 -77.21 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -1.23 Total: 35.43 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 5.28 Total: 13.83 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -7.08 Total: -117.68 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.10 Total: -53.77 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.11 -1.10 -77.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133339443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.813 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds