Wall clock time and date at job start Tue Mar 31 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46937 * 2 1 4 4 O 1.21282 * 120.00100 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.47425 * 125.64271 * 0.05219 * 5 3 2 7 7 C 1.54918 * 104.82827 * 204.07868 * 6 5 3 8 8 C 1.55157 * 101.58155 * 322.99497 * 7 6 5 9 9 H 1.08993 * 110.71794 * 277.13272 * 8 7 6 10 10 C 1.50706 * 110.71825 * 154.04139 * 8 7 6 11 11 O 1.21280 * 119.99687 * 241.45528 * 10 8 7 12 12 N 1.34772 * 120.00079 * 61.45107 * 10 8 7 13 13 C 1.46497 * 120.00242 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47538 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.47364 * 179.97438 * 14 13 12 16 16 C 1.36938 * 119.99860 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00068 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99619 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00252 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47062 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46893 * 120.00222 * 20 18 16 23 23 H 1.48491 * 109.47518 * 240.00383 * 20 18 16 24 24 C 1.47015 * 125.64845 * 179.97438 * 5 3 2 25 25 H 1.08998 * 109.46698 * 60.00326 * 1 2 3 26 26 H 1.08997 * 109.46418 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47160 * 300.00380 * 1 2 3 28 28 H 1.08999 * 109.47144 * 240.00170 * 2 1 3 29 29 H 1.09003 * 109.47064 * 119.99412 * 2 1 3 30 30 H 1.08999 * 110.36633 * 85.25141 * 6 5 3 31 31 H 1.08996 * 110.37033 * 322.91522 * 6 5 3 32 32 H 1.09001 * 111.00522 * 204.91555 * 7 6 5 33 33 H 1.09000 * 110.99891 * 81.06585 * 7 6 5 34 34 H 0.97004 * 120.00125 * 359.97438 * 12 10 8 35 35 H 1.09006 * 109.46765 * 300.00153 * 13 12 10 36 36 H 1.09001 * 109.47063 * 59.99599 * 13 12 10 37 37 H 1.08996 * 109.47369 * 299.99946 * 14 13 12 38 38 H 1.09004 * 109.46913 * 60.00273 * 14 13 12 39 39 H 0.96999 * 119.99750 * 0.02562 * 15 14 13 40 40 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88350 * 59.56990 * 24 5 3 42 42 H 1.08997 * 110.01690 * 298.47505 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4210 0.6463 0.0000 7 6 5.6537 1.3578 0.6119 8 6 5.5101 2.7878 0.0273 9 1 5.9237 2.8359 -0.9800 10 6 6.1759 3.7997 0.9239 11 8 5.5197 4.6838 1.4325 12 7 7.5004 3.7221 1.1605 13 6 8.1476 4.7054 2.0325 14 6 9.6418 4.3925 2.1334 15 7 10.2891 5.3762 3.0049 16 6 11.6347 5.2968 3.2461 17 1 12.2188 4.5092 2.7935 18 6 12.2481 6.2292 4.0715 19 7 11.5362 7.1893 4.6227 20 14 14.0835 6.1205 4.4011 21 1 14.6499 4.9590 3.6692 22 1 14.7443 7.3671 3.9377 23 1 14.3157 5.9492 5.8577 24 6 3.9815 2.9983 0.0001 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 4.6364 0.3234 -1.0185 31 1 4.1302 -0.2049 0.6155 32 1 6.5802 0.8904 0.2781 33 1 5.5956 1.3730 1.7002 34 1 8.0251 3.0147 0.7540 35 1 8.0123 5.7041 1.6171 36 1 7.6996 4.6612 3.0252 37 1 9.7767 3.3939 2.5490 38 1 10.0900 4.4365 1.1407 39 1 9.7643 6.0833 3.4117 40 1 11.9648 7.8406 5.1998 41 1 3.6683 3.5549 0.8834 42 1 3.6982 3.5429 -0.9006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146896818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:56 Heat of formation + Delta-G solvation = -95.974429 kcal Electronic energy + Delta-G solvation = -21668.912362 eV Core-core repulsion = 18261.657478 eV Total energy + Delta-G solvation = -3407.254884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57220 -40.49229 -38.27653 -37.28278 -35.53863 -33.94630 -33.30455 -32.52897 -30.19555 -29.43907 -26.56556 -25.44003 -23.78122 -23.37167 -22.90313 -20.98193 -20.16104 -19.32991 -18.66064 -18.17208 -17.06517 -16.84277 -16.68279 -16.52659 -16.41157 -15.78665 -15.25303 -15.16902 -15.04366 -14.64873 -14.46074 -14.09616 -13.84607 -13.31044 -13.16335 -13.12373 -13.04143 -12.91815 -12.69490 -12.59671 -12.54064 -12.32968 -12.06700 -12.03789 -11.85136 -11.83345 -11.00484 -10.97839 -10.93540 -10.18144 -9.71765 -9.06460 -7.97028 -5.28420 1.48845 1.50274 1.54130 1.59644 1.60353 1.78018 2.21464 2.58228 3.24480 3.37672 3.45590 3.69949 3.78396 4.02239 4.13387 4.17465 4.21391 4.22843 4.24709 4.29566 4.34024 4.59462 4.61114 4.72816 4.79151 4.86004 4.95471 4.99773 5.04524 5.05851 5.14343 5.15512 5.22907 5.36248 5.37410 5.49823 6.23859 6.46338 6.53244 7.11969 7.20771 7.29888 8.02457 8.24346 9.26896 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.051462 B = 0.002326 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.958815 B =12035.396830 C =12295.600162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.511 3.489 4 O -0.598 6.598 5 N -0.622 5.622 6 C 0.097 3.903 7 C -0.119 4.119 8 C -0.107 4.107 9 H 0.150 0.850 10 C 0.517 3.483 11 O -0.591 6.591 12 N -0.702 5.702 13 C 0.126 3.874 14 C 0.150 3.850 15 N -0.749 5.749 16 C -0.245 4.245 17 H 0.086 0.914 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.980 3.020 21 H -0.259 1.259 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.117 3.883 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.068 0.932 34 H 0.421 0.579 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.045 0.955 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.498 -23.064 -14.409 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.302 3.698 4 O -0.479 6.479 5 N -0.356 5.356 6 C -0.024 4.024 7 C -0.157 4.157 8 C -0.129 4.129 9 H 0.168 0.832 10 C 0.304 3.696 11 O -0.471 6.471 12 N -0.354 5.354 13 C 0.001 3.999 14 C 0.023 3.977 15 N -0.392 5.392 16 C -0.376 4.376 17 H 0.104 0.896 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.007 4.007 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.265 -22.086 -14.083 30.318 hybrid contribution 0.799 1.100 0.648 1.506 sum -14.465 -20.987 -13.435 28.813 Atomic orbital electron populations 1.21565 0.93761 1.02781 1.01613 1.21689 0.97808 0.90439 1.06820 1.21482 0.80161 0.93378 0.74729 1.90701 1.55937 1.48892 1.52418 1.48713 1.05890 1.08177 1.72823 1.22747 0.84890 0.91089 1.03689 1.22955 1.00921 0.90862 1.00943 1.22294 0.93640 0.95431 1.01490 0.83239 1.20923 0.81966 0.85504 0.81199 1.90737 1.64817 1.38322 1.53269 1.45614 1.08201 1.32135 1.49466 1.21147 0.92796 0.92112 0.93833 1.20862 0.89451 0.93029 0.94355 1.42471 1.06390 1.33371 1.57015 1.19708 0.85521 1.09662 1.22728 0.89594 1.25703 1.02846 0.97934 1.00786 1.69850 1.36570 1.18567 1.37289 0.84984 0.79562 0.77506 0.77127 1.18329 1.22241 1.22197 1.21602 0.91748 0.85708 1.01669 0.93627 0.89131 0.94132 0.85736 0.86437 0.87493 0.87488 0.84538 0.91287 0.74101 0.93181 0.93189 0.94044 0.94192 0.79611 0.93985 0.93682 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.20 71.98 0.66 -1.13 16 2 C -0.13 -1.29 5.43 29.85 0.16 -1.13 16 3 C 0.51 10.70 7.85 87.66 0.69 11.39 16 4 O -0.60 -19.33 16.31 -3.04 -0.05 -19.38 16 5 N -0.62 -10.64 3.33 -811.79 -2.70 -13.34 16 6 C 0.10 0.58 6.69 86.86 0.58 1.16 16 7 C -0.12 -0.91 6.47 31.99 0.21 -0.70 16 8 C -0.11 -1.59 3.33 -10.35 -0.03 -1.63 16 9 H 0.15 1.23 8.14 -2.39 -0.02 1.22 16 10 C 0.52 13.05 7.16 87.66 0.63 13.68 16 11 O -0.59 -22.03 15.48 -3.03 -0.05 -22.08 16 12 N -0.70 -15.92 5.50 -463.06 -2.55 -18.47 16 13 C 0.13 4.12 5.79 86.38 0.50 4.62 16 14 C 0.15 5.38 6.37 86.38 0.55 5.93 16 15 N -0.75 -37.33 5.60 -343.46 -1.92 -39.25 16 16 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 17 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 19 N -0.97 -59.88 13.06 21.65 0.28 -59.60 16 20 Si 0.98 45.21 29.55 68.60 2.03 47.23 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 C 0.12 2.59 6.27 86.73 0.54 3.14 16 25 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 28 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.12 0.64 7.85 -2.39 -0.02 0.62 16 30 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.11 0.19 7.48 -2.39 -0.02 0.17 16 32 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 0.81 8.04 -2.39 -0.02 0.79 16 34 H 0.42 5.96 8.47 -92.70 -0.79 5.18 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.37 20.33 7.67 -92.71 -0.71 19.62 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.04 1.41 6.89 -2.39 -0.02 1.40 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -84.80 350.35 0.36 -84.43 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.47 Total: 21.65 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.79 Total: 18.80 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -6.89 Total: -130.66 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.10 Total: -41.45 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -84.80 0.36 -84.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146896818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.542 kcal (2) G-P(sol) polarization free energy of solvation -84.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds