Wall clock time and date at job start Tue Mar 31 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21276 * 120.00114 * 2 1 4 4 N 1.34777 * 119.99989 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00025 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.47124 * 35.00693 * 5 4 2 7 7 C 1.52993 * 109.47352 * 275.00016 * 5 4 2 8 8 C 1.50703 * 109.46947 * 155.00339 * 5 4 2 9 9 O 1.21281 * 120.00215 * 359.97438 * 8 5 4 10 10 N 1.34773 * 119.99935 * 180.02562 * 8 5 4 11 11 C 1.47425 * 125.65206 * 359.97438 * 10 8 5 12 12 C 1.54900 * 104.83615 * 155.91598 * 11 10 8 13 13 C 1.55161 * 101.58199 * 37.00719 * 12 11 10 14 14 H 1.08999 * 110.72037 * 205.95570 * 13 12 11 15 15 N 1.46504 * 110.71721 * 82.86441 * 13 12 11 16 16 C 1.36933 * 120.00098 * 89.17334 * 15 13 12 17 17 H 1.07999 * 120.00462 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99819 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00003 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47342 * 89.99772 * 20 18 16 22 22 H 1.48504 * 109.47230 * 329.99892 * 20 18 16 23 23 H 1.48503 * 109.47543 * 209.99694 * 20 18 16 24 24 C 1.47032 * 125.64731 * 180.02562 * 10 8 5 25 25 H 1.08994 * 109.88191 * 300.43270 * 24 10 8 26 26 C 1.53005 * 109.87768 * 61.60043 * 24 10 8 27 27 H 1.08992 * 109.46857 * 240.00333 * 1 2 3 28 28 H 1.09001 * 109.46690 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46735 * 120.00158 * 1 2 3 30 30 H 0.96998 * 119.99841 * 0.02562 * 4 2 1 31 31 H 1.09005 * 109.47427 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.47559 * 300.00411 * 7 5 4 33 33 H 1.09005 * 109.47048 * 60.00142 * 7 5 4 34 34 H 1.09003 * 110.36666 * 37.07461 * 11 10 8 35 35 H 1.09004 * 110.45917 * 274.80608 * 11 10 8 36 36 H 1.09005 * 111.00581 * 278.93243 * 12 11 10 37 37 H 1.09001 * 111.03800 * 155.09675 * 12 11 10 38 38 H 0.97003 * 119.99474 * 269.17258 * 15 13 12 39 39 H 0.97004 * 120.00156 * 0.02562 * 19 18 16 40 40 H 1.08997 * 109.46625 * 170.77867 * 26 24 10 41 41 H 1.08993 * 109.46801 * 290.78309 * 26 24 10 42 42 H 1.09000 * 109.47063 * 50.78254 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0095 -0.3251 0.5888 7 6 4.1554 -1.0425 -1.4372 8 6 4.1484 -2.4546 0.6010 9 8 3.3605 -3.2896 0.9919 10 7 5.4735 -2.6775 0.7052 11 6 6.5371 -1.7527 0.2729 12 6 7.7699 -2.1386 1.1278 13 6 7.6263 -3.6817 1.2027 14 1 8.1082 -4.0708 2.0996 15 7 8.1819 -4.3127 0.0029 16 6 9.5046 -4.6651 -0.0353 17 1 10.1384 -4.4775 0.8188 18 6 10.0311 -5.2625 -1.1723 19 7 9.2590 -5.4908 -2.2134 20 14 11.8356 -5.7425 -1.2247 21 1 11.9931 -7.1317 -0.7240 22 1 12.6194 -4.8160 -0.3688 23 1 12.3290 -5.6615 -2.6230 24 6 6.0978 -3.8839 1.2679 25 1 5.7851 -4.0144 2.3038 26 6 5.6993 -5.1091 0.4426 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6959 -2.0072 0.0005 31 1 5.2454 -1.0429 -1.4377 32 1 3.7918 -1.8846 -2.0261 33 1 3.7919 -0.1113 -1.8720 34 1 6.2462 -0.7210 0.4707 35 1 6.7527 -1.8887 -0.7869 36 1 7.7122 -1.6922 2.1205 37 1 8.6965 -1.8562 0.6280 38 1 7.6128 -4.4809 -0.7644 39 1 8.3220 -5.2412 -2.1864 40 1 6.2894 -5.9687 0.7604 41 1 4.6405 -5.3196 0.5929 42 1 5.8843 -4.9118 -0.6133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178069207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:17 Heat of formation + Delta-G solvation = -77.318210 kcal Electronic energy + Delta-G solvation = -23337.450990 eV Core-core repulsion = 19931.005100 eV Total energy + Delta-G solvation = -3406.445890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81534 -40.55081 -39.04693 -36.21798 -36.06388 -33.71521 -32.50613 -32.13261 -30.40666 -29.59868 -26.79904 -25.83423 -25.45010 -23.44941 -21.76361 -21.38473 -20.11206 -19.50409 -18.61936 -17.90243 -17.39978 -17.01569 -16.71973 -16.34192 -16.04820 -15.63823 -15.31931 -15.01713 -14.77998 -14.46166 -14.27347 -14.07255 -13.71370 -13.53064 -13.34524 -13.26064 -13.13090 -12.98031 -12.84239 -12.69268 -12.52642 -12.31492 -11.94552 -11.78074 -11.77038 -11.24065 -11.08871 -10.96071 -10.91359 -10.30917 -9.79821 -9.09572 -8.33643 -5.28583 1.36234 1.50871 1.61992 1.67650 1.71229 1.84881 2.29438 2.73409 3.17630 3.42583 3.61971 3.69071 3.79981 3.84919 3.94109 4.00549 4.14723 4.17733 4.26194 4.40501 4.50929 4.58103 4.58892 4.65045 4.66686 4.68974 4.83110 4.95808 5.04467 5.05857 5.11698 5.19360 5.22866 5.26875 5.33691 5.67204 6.37674 6.45006 6.53674 6.89216 7.11685 7.14273 8.02165 8.13784 9.17399 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033625 B = 0.003729 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.523019 B = 7507.676264 C = 7628.995225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.592 6.592 4 N -0.710 5.710 5 C 0.135 3.865 6 H 0.111 0.889 7 C -0.160 4.160 8 C 0.525 3.475 9 O -0.566 6.566 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.149 4.149 13 C 0.169 3.831 14 H 0.071 0.929 15 N -0.735 5.735 16 C -0.323 4.323 17 H 0.071 0.929 18 C -0.103 4.103 19 N -0.977 5.977 20 Si 1.127 2.873 21 H -0.290 1.290 22 H -0.271 1.271 23 H -0.298 1.298 24 C 0.132 3.868 25 H 0.085 0.915 26 C -0.134 4.134 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.363 0.637 39 H 0.243 0.757 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.014 9.963 6.011 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.299 3.701 3 O -0.473 6.473 4 N -0.364 5.364 5 C 0.026 3.974 6 H 0.129 0.871 7 C -0.218 4.218 8 C 0.314 3.686 9 O -0.446 6.446 10 N -0.333 5.333 11 C -0.018 4.018 12 C -0.189 4.189 13 C 0.059 3.941 14 H 0.089 0.911 15 N -0.378 5.378 16 C -0.454 4.454 17 H 0.089 0.911 18 C -0.294 4.294 19 N -0.625 5.625 20 Si 0.953 3.047 21 H -0.217 1.217 22 H -0.196 1.196 23 H -0.225 1.225 24 C 0.028 3.972 25 H 0.103 0.897 26 C -0.193 4.193 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.198 0.802 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.744 9.625 5.485 16.886 hybrid contribution -1.376 -0.028 0.458 1.450 sum -14.120 9.597 5.943 18.077 Atomic orbital electron populations 1.21930 0.87590 1.06386 1.06429 1.21643 0.92423 0.82209 0.73815 1.90701 1.72029 1.32715 1.51831 1.45900 1.05304 1.10257 1.74954 1.20596 0.82837 0.95261 0.98720 0.87086 1.22200 1.02872 1.03189 0.93522 1.20509 0.80935 0.88710 0.78469 1.90649 1.54984 1.47913 1.51076 1.48558 1.04841 1.19615 1.60265 1.22500 0.86684 0.93823 0.98802 1.23382 0.97375 0.97697 1.00496 1.21344 0.89817 0.92537 0.90445 0.91131 1.42637 1.08086 1.72619 1.14483 1.20369 0.87655 1.35657 1.01743 0.91142 1.27012 1.09652 1.00106 0.92622 1.70975 1.06486 1.52812 1.32208 0.82611 0.70553 0.76252 0.75303 1.21682 1.19649 1.22512 1.21864 0.93146 0.84723 0.97454 0.89696 1.21749 1.00729 0.97595 0.99193 0.87363 0.88578 0.87054 0.74606 0.89962 0.92049 0.90697 0.88142 0.91881 0.88999 0.90690 0.80228 0.94685 0.92427 0.92390 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.32 71.24 0.74 -1.09 16 2 C 0.51 10.71 7.90 87.66 0.69 11.40 16 3 O -0.59 -17.37 16.75 -3.02 -0.05 -17.42 16 4 N -0.71 -14.95 4.95 -446.11 -2.21 -17.16 16 5 C 0.13 3.22 2.33 44.24 0.10 3.32 16 6 H 0.11 2.70 7.28 -2.39 -0.02 2.68 16 7 C -0.16 -3.59 9.29 71.98 0.67 -2.92 16 8 C 0.53 15.06 7.07 87.66 0.62 15.68 16 9 O -0.57 -18.79 15.02 -3.03 -0.05 -18.83 16 10 N -0.60 -17.40 3.06 -788.05 -2.41 -19.81 16 11 C 0.10 2.76 5.11 86.85 0.44 3.21 16 12 C -0.15 -4.35 6.77 31.98 0.22 -4.14 16 13 C 0.17 6.01 3.47 46.18 0.16 6.17 16 14 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 15 N -0.74 -33.71 4.59 -317.33 -1.46 -35.17 16 16 C -0.32 -16.83 9.97 84.03 0.84 -15.99 16 17 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 18 C -0.10 -5.68 5.50 84.86 0.47 -5.21 16 19 N -0.98 -59.11 13.70 21.65 0.30 -58.81 16 20 Si 1.13 50.27 29.92 68.60 2.05 52.32 16 21 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 24 C 0.13 4.29 3.43 45.34 0.16 4.45 16 25 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 26 C -0.13 -4.84 8.13 71.98 0.58 -4.26 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.42 7.90 7.79 -92.71 -0.72 7.18 16 31 H 0.08 1.83 4.99 -2.38 -0.01 1.82 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.10 2.09 7.36 -2.39 -0.02 2.07 16 35 H 0.06 1.87 7.07 -2.38 -0.02 1.85 16 36 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 38 H 0.36 17.81 4.58 -92.71 -0.42 17.38 16 39 H 0.24 14.68 6.77 -92.71 -0.63 14.05 16 40 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 41 H 0.06 2.04 7.14 -2.39 -0.02 2.02 16 42 H 0.04 1.52 6.64 -2.39 -0.02 1.50 16 Total: -1.00 -69.56 337.41 1.89 -67.67 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.03 Total: 36.61 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 5.69 Total: 10.60 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -5.78 Total: -130.95 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.10 Total: -36.25 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -69.56 1.89 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178069207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.650 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds