Wall clock time and date at job start Tue Mar 31 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47316 * 2 1 4 4 O 1.21286 * 120.00034 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00015 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00001 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.47044 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00116 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99923 * 179.97438 * 7 6 5 10 10 C 1.47425 * 125.64420 * 359.94683 * 9 7 6 11 11 C 1.54918 * 104.82827 * 204.16865 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 H 1.08993 * 110.71794 * 277.13272 * 12 11 10 14 14 N 1.46501 * 110.71624 * 153.86110 * 12 11 10 15 15 C 1.36939 * 119.99402 * 86.45404 * 14 12 11 16 16 H 1.07995 * 120.00873 * 359.97438 * 15 14 12 17 17 C 1.38822 * 119.99744 * 179.97438 * 15 14 12 18 18 N 1.31612 * 119.99997 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99660 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46980 * 89.99834 * 19 17 15 21 21 H 1.48501 * 109.46805 * 209.99578 * 19 17 15 22 22 H 1.48496 * 109.47014 * 329.99673 * 19 17 15 23 23 C 1.47015 * 125.64697 * 179.97438 * 9 7 6 24 24 H 1.08997 * 110.01690 * 298.38508 * 23 9 7 25 25 C 1.52998 * 109.88489 * 59.48179 * 23 9 7 26 26 H 1.09005 * 109.46839 * 60.00247 * 1 2 3 27 27 H 1.08999 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47211 * 300.00596 * 1 2 3 29 29 H 1.08995 * 109.47349 * 239.99470 * 2 1 3 30 30 H 1.09005 * 109.46839 * 119.99753 * 2 1 3 31 31 H 0.96994 * 119.99902 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47263 * 59.99456 * 6 5 3 33 33 H 1.09009 * 109.46695 * 299.99305 * 6 5 3 34 34 H 1.08999 * 110.36633 * 85.34138 * 10 9 7 35 35 H 1.08996 * 110.37033 * 323.00518 * 10 9 7 36 36 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 37 37 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 38 38 H 0.96995 * 120.00198 * 266.44512 * 14 12 11 39 39 H 0.97001 * 119.99458 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47715 * 177.80406 * 25 23 9 41 41 H 1.08999 * 109.46866 * 297.81118 * 25 23 9 42 42 H 1.09004 * 109.47034 * 57.80231 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0482 -0.0011 7 6 5.3528 3.0482 -0.0010 8 8 5.9592 1.9978 0.0000 9 7 6.0268 4.2154 -0.0019 10 6 5.4188 5.5584 -0.0043 11 6 6.5006 6.4822 -0.6177 12 6 7.8008 5.8713 -0.0316 13 1 7.9838 6.2472 0.9750 14 7 8.9434 6.1482 -0.9056 15 6 9.6402 7.3194 -0.7711 16 1 9.3473 8.0391 -0.0210 17 6 10.7233 7.5817 -1.5989 18 7 11.3927 8.7075 -1.4700 19 14 11.2296 6.3372 -2.8969 20 1 10.5093 6.6225 -4.1638 21 1 12.6936 6.4309 -3.1279 22 1 10.8885 4.9692 -2.4307 23 6 7.4898 4.3600 -0.0014 24 1 7.9086 3.9132 0.9003 25 6 8.0801 3.6827 -1.2398 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.9877 0.9297 -0.0005 32 1 3.4828 3.5624 0.8888 33 1 3.4822 3.5617 -0.8913 34 1 5.1859 5.8712 1.0136 35 1 4.5195 5.5667 -0.6200 36 1 6.3687 7.5122 -0.2861 37 1 6.4959 6.4202 -1.7060 38 1 9.2065 5.5021 -1.5795 39 1 12.1492 8.8909 -2.0488 40 1 9.1604 3.8274 -1.2530 41 1 7.8566 2.6163 -1.2120 42 1 7.6437 4.1220 -2.1369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178360125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:14 Heat of formation + Delta-G solvation = -53.199953 kcal Electronic energy + Delta-G solvation = -22551.899014 eV Core-core repulsion = 19146.498970 eV Total energy + Delta-G solvation = -3405.400044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55851 -39.67366 -37.82655 -34.67744 -34.45055 -33.11131 -31.92000 -30.94747 -29.89339 -27.89213 -25.57757 -24.42296 -23.07567 -22.62785 -20.63358 -19.91611 -18.92076 -18.07451 -17.69231 -16.60817 -16.47062 -16.21162 -15.75767 -15.16421 -14.91553 -14.31249 -14.17053 -13.99037 -13.64832 -13.29577 -13.03328 -12.75047 -12.63107 -12.61448 -12.22279 -12.07564 -12.03629 -11.77758 -11.50087 -11.49077 -11.25799 -10.95269 -10.62973 -10.41161 -10.18848 -10.15448 -9.91316 -9.61572 -9.43242 -9.03699 -8.66578 -7.39460 -5.86491 -3.23757 2.34847 2.46723 2.55995 3.18472 3.30183 3.33063 3.39594 4.25678 4.45098 4.50120 4.74724 4.75428 4.83502 5.00413 5.01335 5.09067 5.16803 5.25121 5.31597 5.45413 5.47317 5.47518 5.56752 5.60244 5.75677 5.80484 5.87831 5.93687 6.03093 6.10074 6.28064 6.43562 6.44356 6.49207 6.75802 7.21309 7.46476 7.87949 7.92339 8.00223 8.32131 9.09216 9.81372 9.99710 11.31285 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040652 B = 0.003183 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.611193 B = 8794.642773 C = 9146.131055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.543 6.543 5 N -0.720 5.720 6 C 0.104 3.896 7 C 0.522 3.478 8 O -0.543 6.543 9 N -0.603 5.603 10 C 0.092 3.908 11 C -0.152 4.152 12 C 0.179 3.821 13 H 0.073 0.927 14 N -0.741 5.741 15 C -0.250 4.250 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.879 3.121 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.276 1.276 23 C 0.127 3.873 24 H 0.077 0.923 25 C -0.165 4.165 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.412 0.588 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.368 0.632 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.101 -15.155 3.245 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.420 6.420 5 N -0.375 5.375 6 C -0.024 4.024 7 C 0.310 3.690 8 O -0.422 6.422 9 N -0.337 5.337 10 C -0.031 4.031 11 C -0.193 4.193 12 C 0.068 3.932 13 H 0.091 0.909 14 N -0.386 5.386 15 C -0.379 4.379 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.576 5.576 19 Si 0.709 3.291 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.202 1.202 23 C 0.023 3.977 24 H 0.095 0.905 25 C -0.223 4.223 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.250 0.750 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.204 0.796 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.236 -14.873 3.311 23.764 hybrid contribution 0.840 -0.945 -1.016 1.622 sum -17.396 -15.818 2.294 23.624 Atomic orbital electron populations 1.21535 0.92872 1.01643 1.03416 1.21618 0.98671 0.93374 1.04636 1.20828 0.81528 0.92161 0.75543 1.90713 1.55308 1.46554 1.49473 1.45804 1.07701 1.08331 1.75710 1.21033 0.91224 0.85372 1.04733 1.20053 0.89215 0.82970 0.76755 1.90670 1.69801 1.30595 1.51096 1.48518 1.07923 1.05659 1.71594 1.22519 0.97411 0.81889 1.01247 1.23524 0.95463 0.98931 1.01422 1.21151 0.87408 0.89422 0.95229 0.90898 1.42973 1.33467 1.21765 1.40384 1.19048 1.08140 0.94411 1.16328 0.88998 1.24660 0.97897 0.96908 0.99262 1.69688 1.22429 1.24044 1.41466 0.86660 0.78146 0.81536 0.82744 1.20944 1.21525 1.20209 1.21869 0.78482 0.98236 0.99077 0.90466 1.22095 1.01775 1.01038 0.97367 0.91936 0.92006 0.91943 0.88726 0.88727 0.75007 0.88441 0.88465 0.90936 0.90847 0.89850 0.90633 0.79573 0.92906 0.90720 0.91610 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.14 -0.96 6.42 -27.89 -0.18 -1.14 16 3 C 0.51 5.31 7.83 -10.99 -0.09 5.22 16 4 O -0.54 -7.53 15.98 5.55 0.09 -7.45 16 5 N -0.72 -7.24 5.53 -61.47 -0.34 -7.58 16 6 C 0.10 1.11 5.16 -5.19 -0.03 1.08 16 7 C 0.52 6.87 7.70 -10.98 -0.08 6.79 16 8 O -0.54 -8.48 14.57 5.56 0.08 -8.40 16 9 N -0.60 -8.08 3.08 -163.02 -0.50 -8.58 16 10 C 0.09 1.06 6.69 -2.52 -0.02 1.04 16 11 C -0.15 -2.25 6.77 -24.58 -0.17 -2.41 16 12 C 0.18 3.13 3.46 -66.09 -0.23 2.91 16 13 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 14 N -0.74 -16.36 4.82 -51.65 -0.25 -16.61 16 15 C -0.25 -6.65 10.46 -15.05 -0.16 -6.81 16 16 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 18 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16 19 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.29 6.45 56.52 0.36 -5.92 16 23 C 0.13 2.00 3.48 -66.96 -0.23 1.76 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 C -0.16 -2.73 7.95 37.16 0.30 -2.43 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.41 3.86 7.44 -40.82 -0.30 3.55 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.00 7.85 -51.92 -0.41 0.59 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.70 7.47 -51.93 -0.39 0.31 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.37 8.07 2.79 -40.82 -0.11 7.95 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 1.33 6.60 -51.93 -0.34 0.99 16 41 H 0.06 1.08 6.76 -51.93 -0.35 0.73 16 42 H 0.06 0.94 8.08 -51.93 -0.42 0.53 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -32.64 339.80 -6.94 -39.58 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.57 Total: 9.16 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.64 Total: 5.56 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.32 Total: -60.26 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.17 Total: -15.84 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.64 -6.94 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178360125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.618 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds