Wall clock time and date at job start Tue Mar 31 2020 02:48:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.87149 * 2 1
4 4 C 1.54315 * 109.88508 * 121.01541 * 2 1 3
5 5 H 1.09005 * 110.72207 * 215.59089 * 4 2 1
6 6 N 1.46497 * 110.72358 * 338.86239 * 4 2 1
7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2
8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4
9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4
10 10 N 1.31626 * 119.99782 * 359.97438 * 9 7 6
11 11 Si 1.86797 * 120.00506 * 179.97438 * 9 7 6
12 12 H 1.48507 * 109.46947 * 59.99182 * 11 9 7
13 13 H 1.48495 * 109.47423 * 179.97438 * 11 9 7
14 14 H 1.48506 * 109.46928 * 299.99992 * 11 9 7
15 15 C 1.55156 * 102.94436 * 97.22518 * 4 2 1
16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2
17 17 N 1.47017 * 109.87941 * 238.82754 * 2 1 3
18 18 C 1.34780 * 125.65357 * 59.48599 * 17 2 1
19 19 O 1.21281 * 119.99587 * 359.97438 * 18 17 2
20 20 C 1.50694 * 120.00043 * 179.97438 * 18 17 2
21 21 C 1.50703 * 109.47112 * 179.97438 * 20 18 17
22 22 O 1.21282 * 119.99919 * 0.02562 * 21 20 18
23 23 N 1.34778 * 120.00208 * 179.97438 * 21 20 18
24 24 C 1.46497 * 120.00126 * 180.02562 * 23 21 20
25 25 C 1.46500 * 119.99990 * 359.97438 * 23 21 20
26 26 H 1.09004 * 109.47271 * 298.98374 * 1 2 3
27 27 H 1.08999 * 109.47439 * 58.98369 * 1 2 3
28 28 H 1.09000 * 109.46977 * 178.98918 * 1 2 3
29 29 H 0.97005 * 119.99905 * 19.97312 * 6 4 2
30 30 H 0.97006 * 120.00022 * 180.02562 * 10 9 7
31 31 H 1.09002 * 111.00677 * 153.57697 * 15 4 2
32 32 H 1.09002 * 111.00564 * 277.38955 * 15 4 2
33 33 H 1.09008 * 110.36753 * 81.85112 * 16 15 4
34 34 H 1.09001 * 110.37094 * 204.16995 * 16 15 4
35 35 H 1.09001 * 109.47240 * 299.99566 * 20 18 17
36 36 H 1.09000 * 109.47238 * 59.99771 * 20 18 17
37 37 H 1.09000 * 109.47428 * 89.99855 * 24 23 21
38 38 H 1.08991 * 109.47533 * 210.00104 * 24 23 21
39 39 H 1.09005 * 109.47344 * 330.00428 * 24 23 21
40 40 H 1.09000 * 109.46865 * 90.00042 * 25 23 21
41 41 H 1.08999 * 109.47162 * 210.00219 * 25 23 21
42 42 H 1.08997 * 109.46986 * 330.00005 * 25 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0549 -0.7477 1.2437
5 1 2.9657 -0.2808 1.6186
6 7 1.0294 -0.7994 2.2886
7 6 1.3879 -1.0366 3.5888
8 1 2.4267 -1.1859 3.8438
9 6 0.4161 -1.0861 4.5787
10 7 -0.8499 -0.9046 4.2678
11 14 0.9051 -1.4103 6.3522
12 1 1.8324 -0.3456 6.8125
13 1 -0.3086 -1.4129 7.2078
14 1 1.5805 -2.7295 6.4462
15 6 2.3519 -2.1685 0.6954
16 6 2.8564 -1.8517 -0.7346
17 7 2.0299 -0.7156 -1.1829
18 6 1.7741 -0.3887 -2.4652
19 8 1.0761 0.5702 -2.7188
20 6 2.3554 -1.2144 -3.5837
21 6 1.9208 -0.6425 -4.9086
22 8 1.2096 0.3393 -4.9412
23 7 2.3235 -1.2215 -6.0571
24 6 1.9015 -0.6652 -7.3450
25 6 3.1840 -2.4064 -6.0177
26 1 -0.3634 0.4980 0.8990
27 1 -0.3634 0.5295 -0.8807
28 1 -0.3633 -1.0275 -0.0181
29 1 0.0963 -0.6656 2.0595
30 1 -1.5290 -0.9388 4.9597
31 1 3.1271 -2.6600 1.2833
32 1 1.4454 -2.7729 0.6649
33 1 3.9089 -1.5690 -0.7116
34 1 2.7079 -2.7111 -1.3884
35 1 3.4434 -1.1981 -3.5199
36 1 2.0018 -2.2420 -3.4984
37 1 2.6289 0.0757 -7.6767
38 1 1.8358 -1.4651 -8.0824
39 1 0.9258 -0.1920 -7.2343
40 1 2.5658 -3.3038 -5.9953
41 1 3.8185 -2.4243 -6.9039
42 1 3.8081 -2.3727 -5.1248
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001179678442.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:11
Heat of formation + Delta-G solvation = -35.465622 kcal
Electronic energy + Delta-G solvation = -22904.294228 eV
Core-core repulsion = 19499.663203 eV
Total energy + Delta-G solvation = -3404.631025 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.47131 -39.32469 -37.26295 -35.57910 -34.14357 -32.04767 -30.88097 -30.57545
-28.80218 -27.88351 -25.97916 -25.18507 -23.49215 -22.58283 -20.36685 -19.09934
-18.46061 -17.64036 -17.37940 -16.45403 -16.27951 -15.91470 -15.49082 -14.92472
-14.67358 -14.16451 -13.76218 -13.47878 -13.29865 -13.18374 -12.99255 -12.90010
-12.75649 -12.42132 -12.29252 -12.07986 -11.97409 -11.70289 -11.48250 -11.15544
-10.96181 -10.81139 -10.43001 -10.22254 -10.01402 -9.96634 -9.67904 -9.17411
-8.93837 -8.91339 -8.31249 -7.01635 -5.80717 -3.10668 2.52204 2.61845
2.90659 3.30388 3.41749 3.46576 3.47705 4.26699 4.54875 4.55771
4.69118 4.91481 4.98641 5.00223 5.06657 5.10335 5.26241 5.30494
5.33749 5.40339 5.55992 5.56956 5.59412 5.66648 5.85858 6.08699
6.13426 6.19148 6.26160 6.34940 6.56827 6.61945 6.76041 6.88230
7.02937 7.08088 7.66038 7.82315 8.07367 8.37767 8.49567 9.49236
10.04920 10.39768 11.41691
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.044210 B = 0.003287 C = 0.003140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 633.184643 B = 8516.882421 C = 8915.221233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.131 3.869
3 H 0.070 0.930
4 C 0.174 3.826
5 H 0.062 0.938
6 N -0.718 5.718
7 C -0.245 4.245
8 H 0.071 0.929
9 C -0.011 4.011
10 N -0.931 5.931
11 Si 0.909 3.091
12 H -0.286 1.286
13 H -0.291 1.291
14 H -0.286 1.286
15 C -0.154 4.154
16 C 0.097 3.903
17 N -0.613 5.613
18 C 0.525 3.475
19 O -0.499 6.499
20 C -0.159 4.159
21 C 0.512 3.488
22 O -0.488 6.488
23 N -0.631 5.631
24 C 0.088 3.912
25 C 0.077 3.923
26 H 0.079 0.921
27 H 0.060 0.940
28 H 0.055 0.945
29 H 0.391 0.609
30 H 0.257 0.743
31 H 0.075 0.925
32 H 0.074 0.926
33 H 0.065 0.935
34 H 0.066 0.934
35 H 0.118 0.882
36 H 0.118 0.882
37 H 0.052 0.948
38 H 0.067 0.933
39 H 0.076 0.924
40 H 0.057 0.943
41 H 0.071 0.929
42 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.784 -6.009 -20.303 23.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.028 3.972
3 H 0.089 0.911
4 C 0.062 3.938
5 H 0.080 0.920
6 N -0.361 5.361
7 C -0.376 4.376
8 H 0.089 0.911
9 C -0.207 4.207
10 N -0.579 5.579
11 Si 0.740 3.260
12 H -0.212 1.212
13 H -0.217 1.217
14 H -0.213 1.213
15 C -0.195 4.195
16 C -0.026 4.026
17 N -0.350 5.350
18 C 0.310 3.690
19 O -0.372 6.372
20 C -0.201 4.201
21 C 0.298 3.702
22 O -0.360 6.360
23 N -0.369 5.369
24 C -0.055 4.055
25 C -0.066 4.066
26 H 0.097 0.903
27 H 0.079 0.921
28 H 0.074 0.926
29 H 0.230 0.770
30 H 0.067 0.933
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.083 0.917
34 H 0.085 0.915
35 H 0.136 0.864
36 H 0.136 0.864
37 H 0.071 0.929
38 H 0.086 0.914
39 H 0.095 0.905
40 H 0.076 0.924
41 H 0.090 0.910
42 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 10.009 -4.902 -20.353 23.205
hybrid contribution 0.180 -0.563 0.888 1.067
sum 10.189 -5.465 -19.465 22.640
Atomic orbital electron populations
1.22008 0.94641 1.02342 1.02732 1.21783 0.95370 0.95711 0.84377
0.91148 1.21173 0.93187 0.92038 0.87425 0.91980 1.42685 1.05254
1.85269 1.02925 1.19190 0.92989 1.41365 0.84048 0.91132 1.24760
0.95305 1.02507 0.98137 1.69655 0.99342 1.56207 1.32684 0.86249
0.77008 0.78029 0.84741 1.21222 1.21700 1.21253 1.23545 1.01645
1.01371 0.92932 1.22383 0.94539 0.88406 0.97318 1.48620 1.50845
1.30695 1.04797 1.19489 0.81928 0.85565 0.81992 1.90835 1.36543
1.27563 1.82254 1.21603 1.03844 1.02068 0.92620 1.20116 0.81007
0.84231 0.84893 1.90866 1.34550 1.24272 1.86285 1.47789 1.52015
1.30767 1.06297 1.21588 1.01407 0.98729 0.83768 1.21818 0.94198
0.87279 1.03317 0.90272 0.92064 0.92621 0.77043 0.93315 0.90656
0.90682 0.91724 0.91548 0.86439 0.86405 0.92903 0.91388 0.90486
0.92449 0.90980 0.90866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.13 7.95 37.16 0.30 -2.83 16
2 C 0.13 2.38 3.48 -66.96 -0.23 2.15 16
3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
4 C 0.17 3.32 3.46 -66.10 -0.23 3.10 16
5 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16
6 N -0.72 -17.40 5.02 -51.66 -0.26 -17.66 16
7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.72 16
8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16
9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
10 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16
11 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16
12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16
14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
15 C -0.15 -2.43 6.77 -24.58 -0.17 -2.59 16
16 C 0.10 1.18 6.69 -2.50 -0.02 1.16 16
17 N -0.61 -9.44 3.08 -162.99 -0.50 -9.94 16
18 C 0.52 8.42 7.62 -10.99 -0.08 8.34 16
19 O -0.50 -10.43 13.08 -18.96 -0.25 -10.68 16
20 C -0.16 -1.70 3.75 -29.04 -0.11 -1.81 16
21 C 0.51 6.72 7.67 -10.98 -0.08 6.64 16
22 O -0.49 -9.05 13.76 -18.96 -0.26 -9.31 16
23 N -0.63 -5.82 3.27 -189.52 -0.62 -6.44 16
24 C 0.09 0.71 10.44 59.85 0.62 1.33 16
25 C 0.08 0.37 10.24 59.85 0.61 0.99 16
26 H 0.08 1.68 6.67 -51.93 -0.35 1.34 16
27 H 0.06 1.24 6.76 -51.93 -0.35 0.89 16
28 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16
29 H 0.39 10.10 4.92 -40.82 -0.20 9.90 16
30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16
34 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16
35 H 0.12 0.88 7.40 -51.93 -0.38 0.50 16
36 H 0.12 0.95 7.81 -51.93 -0.41 0.55 16
37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
38 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16
39 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16
40 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
41 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16
42 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16
LS Contribution 337.94 15.07 5.09 5.09
Total: -1.00 -35.91 337.94 -7.29 -43.20
By element:
Atomic # 1 Polarization: 13.02 SS G_CDS: -6.56 Total: 6.46 kcal
Atomic # 6 Polarization: 8.98 SS G_CDS: 0.37 Total: 9.35 kcal
Atomic # 7 Polarization: -60.35 SS G_CDS: -0.66 Total: -61.01 kcal
Atomic # 8 Polarization: -19.47 SS G_CDS: -0.51 Total: -19.98 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -35.91 -7.29 -43.20 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001179678442.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.732 kcal
(2) G-P(sol) polarization free energy of solvation -35.907 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.466 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds